Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIR6835-201ENST00000621552 64 ntBASIC0.85□□□□□ -2.27
LIMD1Q9UGP4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
LIMD1Q9UGP4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.84□□□□□ -2.27
LIMD1Q9UGP4 SNORD114-23-201ENST00000363536 72 ntBASIC0.84□□□□□ -2.27
LIMD1Q9UGP4 RNA5SP457-201ENST00000363657 124 ntBASIC0.84□□□□□ -2.27
LIMD1Q9UGP4 MIR876-201ENST00000401147 81 ntBASIC0.84□□□□□ -2.27
LIMD1Q9UGP4 MTND4LP19-201ENST00000403051 166 ntBASIC0.84□□□□□ -2.27
LIMD1Q9UGP4 RNU7-129P-201ENST00000516128 62 ntBASIC0.84□□□□□ -2.27
LIMD1Q9UGP4 MIR6773-201ENST00000612812 74 ntBASIC0.83□□□□□ -2.28
LIMD1Q9UGP4 U4.4-201ENST00000620626 117 ntBASIC0.83□□□□□ -2.28
LIMD1Q9UGP4 SNORA9.1-201ENST00000362412 131 ntBASIC0.82□□□□□ -2.28
LIMD1Q9UGP4 SNORD60.1-201ENST00000362451 73 ntBASIC0.82□□□□□ -2.28
LIMD1Q9UGP4 MIR508-201ENST00000384857 115 ntBASIC0.82□□□□□ -2.28
LIMD1Q9UGP4 RNU6-518P-201ENST00000516056 96 ntBASIC0.82□□□□□ -2.28
LIMD1Q9UGP4 RNA5SP470-201ENST00000516463 106 ntBASIC0.82□□□□□ -2.28
LIMD1Q9UGP4 AC010487.4-201ENST00000637027 61 ntBASIC0.82□□□□□ -2.28
LIMD1Q9UGP4 SNORD114-2-201ENST00000363953 78 ntBASIC0.81□□□□□ -2.28
LIMD1Q9UGP4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.81□□□□□ -2.28
LIMD1Q9UGP4 MIR1255B2-201ENST00000408618 67 ntBASIC0.81□□□□□ -2.28
LIMD1Q9UGP4 AC079150.2-201ENST00000443733 78 ntBASIC0.81□□□□□ -2.28
LIMD1Q9UGP4 MIR924-201ENST00000638017 53 ntBASIC0.81□□□□□ -2.28
LIMD1Q9UGP4 RNU6-1036P-201ENST00000383959 104 ntBASIC0.8□□□□□ -2.28
LIMD1Q9UGP4 MIR633-201ENST00000384821 98 ntBASIC0.8□□□□□ -2.28
LIMD1Q9UGP4 SNORA49-201ENST00000386157 136 ntBASIC0.8□□□□□ -2.28
LIMD1Q9UGP4 RNU6-351P-201ENST00000516097 100 ntBASIC0.8□□□□□ -2.28
LIMD1Q9UGP4 RNA5SP330-201ENST00000517096 96 ntBASIC0.8□□□□□ -2.28
LIMD1Q9UGP4 MIR3938-201ENST00000582157 103 ntBASIC0.8□□□□□ -2.28
LIMD1Q9UGP4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.79□□□□□ -2.28
LIMD1Q9UGP4 Y_RNA.178-201ENST00000363832 102 ntBASIC0.79□□□□□ -2.28
LIMD1Q9UGP4 MIR499B-201ENST00000636498 73 ntBASIC0.79□□□□□ -2.28
LIMD1Q9UGP4 MIR6866-201ENST00000638146 69 ntBASIC0.79□□□□□ -2.28
LIMD1Q9UGP4 SNORD115-25-201ENST00000362619 82 ntBASIC0.78□□□□□ -2.28
LIMD1Q9UGP4 RNA5SP193-201ENST00000410353 107 ntBASIC0.78□□□□□ -2.28
LIMD1Q9UGP4 RNU7-154P-201ENST00000516194 62 ntBASIC0.78□□□□□ -2.28
LIMD1Q9UGP4 MIR3925-201ENST00000584674 77 ntBASIC0.78□□□□□ -2.28
LIMD1Q9UGP4 MIR106A-201ENST00000384870 81 ntBASIC0.77□□□□□ -2.29
LIMD1Q9UGP4 RNU6-337P-201ENST00000391243 106 ntBASIC0.77□□□□□ -2.29
LIMD1Q9UGP4 AC090617.8-201ENST00000623339 167 ntBASIC0.77□□□□□ -2.29
LIMD1Q9UGP4 RNU6-1079P-201ENST00000362861 110 ntBASIC0.76□□□□□ -2.29
LIMD1Q9UGP4 Y_RNA.74-201ENST00000362911 99 ntBASIC0.75□□□□□ -2.29
LIMD1Q9UGP4 MIRLET7B-201ENST00000385140 83 ntBASIC0.75□□□□□ -2.29
LIMD1Q9UGP4 MIR146A-201ENST00000385201 99 ntBASIC0.75□□□□□ -2.29
LIMD1Q9UGP4 SCARNA11.2-201ENST00000517183 154 ntBASIC0.75□□□□□ -2.29
LIMD1Q9UGP4 RN7SL660P-201ENST00000614852 299 ntBASIC0.75□□□□□ -2.29
LIMD1Q9UGP4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.74□□□□□ -2.29
LIMD1Q9UGP4 SNORA68.3-201ENST00000515906 83 ntBASIC0.74□□□□□ -2.29
LIMD1Q9UGP4 MIR4711-201ENST00000578274 70 ntBASIC0.74□□□□□ -2.29
LIMD1Q9UGP4 uc_338.17-201ENST00000619633 179 ntBASIC0.74□□□□□ -2.29
LIMD1Q9UGP4 MIRLET7D-201ENST00000362263 87 ntBASIC0.73□□□□□ -2.29
LIMD1Q9UGP4 RNU6-502P-201ENST00000362419 108 ntBASIC0.73□□□□□ -2.29
LIMD1Q9UGP4 RNA5SP347-201ENST00000362445 119 ntBASIC0.73□□□□□ -2.29
LIMD1Q9UGP4 Y_RNA.68-201ENST00000362881 102 ntBASIC0.73□□□□□ -2.29
LIMD1Q9UGP4 Y_RNA.325-201ENST00000365171 122 ntBASIC0.73□□□□□ -2.29
LIMD1Q9UGP4 MIR519A2-201ENST00000384990 87 ntBASIC0.73□□□□□ -2.29
LIMD1Q9UGP4 RNU6-782P-201ENST00000516852 104 ntBASIC0.73□□□□□ -2.29
LIMD1Q9UGP4 MIR8087-201ENST00000612745 78 ntBASIC0.72□□□□□ -2.29
LIMD1Q9UGP4 RNU6-614P-201ENST00000384369 107 ntBASIC0.71□□□□□ -2.3
LIMD1Q9UGP4 U6.59-201ENST00000615686 107 ntBASIC0.71□□□□□ -2.3
LIMD1Q9UGP4 AC090625.1-201ENST00000357130 210 ntBASIC0.7□□□□□ -2.3
LIMD1Q9UGP4 MIR103A1-201ENST00000362165 78 ntBASIC0.7□□□□□ -2.3
LIMD1Q9UGP4 RNU6-987P-201ENST00000384759 104 ntBASIC0.7□□□□□ -2.3
LIMD1Q9UGP4 RNA5SP98-201ENST00000363158 137 ntBASIC0.69□□□□□ -2.3
LIMD1Q9UGP4 RNU6-829P-201ENST00000363700 112 ntBASIC0.69□□□□□ -2.3
LIMD1Q9UGP4 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.69□□□□□ -2.3
LIMD1Q9UGP4 MIR429-201ENST00000362106 83 ntBASIC0.68□□□□□ -2.3
LIMD1Q9UGP4 MIR1197-201ENST00000408818 88 ntBASIC0.68□□□□□ -2.3
LIMD1Q9UGP4 MIR330-201ENST00000362196 94 ntBASIC0.67□□□□□ -2.3
LIMD1Q9UGP4 RNA5SP257-201ENST00000363023 116 ntBASIC0.67□□□□□ -2.3
LIMD1Q9UGP4 MIR527-201ENST00000385244 85 ntBASIC0.67□□□□□ -2.3
LIMD1Q9UGP4 RNU4-37P-201ENST00000410214 84 ntBASIC0.67□□□□□ -2.3
LIMD1Q9UGP4 AC108740.1-201ENST00000498629 225 ntBASIC0.67□□□□□ -2.3
LIMD1Q9UGP4 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.67□□□□□ -2.3
LIMD1Q9UGP4 RNA5SP62-201ENST00000363457 110 ntBASIC0.66□□□□□ -2.3
LIMD1Q9UGP4 RNU6-520P-201ENST00000384717 104 ntBASIC0.66□□□□□ -2.3
LIMD1Q9UGP4 RNU6-127P-201ENST00000390897 107 ntBASIC0.66□□□□□ -2.3
LIMD1Q9UGP4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.65□□□□□ -2.3
LIMD1Q9UGP4 RNA5SP499-201ENST00000363982 119 ntBASIC0.65□□□□□ -2.31
LIMD1Q9UGP4 SNORD116-16-201ENST00000384533 92 ntBASIC0.65□□□□□ -2.31
LIMD1Q9UGP4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.65□□□□□ -2.31
LIMD1Q9UGP4 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.65□□□□□ -2.31
LIMD1Q9UGP4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
LIMD1Q9UGP4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.64□□□□□ -2.31
LIMD1Q9UGP4 RNU6-1246P-201ENST00000391064 107 ntBASIC0.64□□□□□ -2.31
LIMD1Q9UGP4 RNU7-119P-201ENST00000459279 63 ntBASIC0.64□□□□□ -2.31
LIMD1Q9UGP4 AC069113.3-201ENST00000521019 150 ntBASIC0.64□□□□□ -2.31
LIMD1Q9UGP4 AP000676.1-201ENST00000533307 52 ntBASIC0.64□□□□□ -2.31
LIMD1Q9UGP4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.63□□□□□ -2.31
LIMD1Q9UGP4 RNU6-815P-201ENST00000384080 113 ntBASIC0.63□□□□□ -2.31
LIMD1Q9UGP4 SNORA41B-201ENST00000384785 128 ntBASIC0.63□□□□□ -2.31
LIMD1Q9UGP4 MIR892B-201ENST00000401279 77 ntBASIC0.63□□□□□ -2.31
LIMD1Q9UGP4 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.63□□□□□ -2.31
LIMD1Q9UGP4 MIR5087-201ENST00000635826 76 ntBASIC0.63□□□□□ -2.31
LIMD1Q9UGP4 Y_RNA.236-201ENST00000364427 111 ntBASIC0.61□□□□□ -2.31
LIMD1Q9UGP4 Y_RNA.282-201ENST00000364793 102 ntBASIC0.61□□□□□ -2.31
LIMD1Q9UGP4 snoR1.1-201ENST00000628177 80 ntBASIC0.61□□□□□ -2.31
LIMD1Q9UGP4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.6□□□□□ -2.31
LIMD1Q9UGP4 MIR92A1-201ENST00000385233 78 ntBASIC0.58□□□□□ -2.32
LIMD1Q9UGP4 CR383656.4-201ENST00000546909 122 ntBASIC0.58□□□□□ -2.32
LIMD1Q9UGP4 SNORD115-23-201ENST00000364461 82 ntBASIC0.57□□□□□ -2.32
LIMD1Q9UGP4 RNU6-246P-201ENST00000384702 107 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 175.2 ms