Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-656P-201ENST00000516785 107 ntBASIC0.56□□□□□ -2.32
CCDC87Q9NVE4 AC023932.2-201ENST00000603176 175 ntBASIC0.56□□□□□ -2.32
CCDC87Q9NVE4 RNU6-590P-201ENST00000365039 107 ntBASIC0.55□□□□□ -2.32
CCDC87Q9NVE4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.55□□□□□ -2.32
CCDC87Q9NVE4 AL157398.1-201ENST00000452981 186 ntBASIC0.55□□□□□ -2.32
CCDC87Q9NVE4 SNORA50A-201ENST00000384225 134 ntBASIC0.54□□□□□ -2.32
CCDC87Q9NVE4 SNORD116-24-201ENST00000384549 92 ntBASIC0.54□□□□□ -2.32
CCDC87Q9NVE4 HAR1A.1-201ENST00000459583 118 ntBASIC0.53□□□□□ -2.32
CCDC87Q9NVE4 RNU6-782P-201ENST00000516852 104 ntBASIC0.53□□□□□ -2.32
CCDC87Q9NVE4 MIR3925-201ENST00000584674 77 ntBASIC0.53□□□□□ -2.32
CCDC87Q9NVE4 AC069113.3-201ENST00000521019 150 ntBASIC0.52□□□□□ -2.33
CCDC87Q9NVE4 Y_RNA.443-201ENST00000384135 111 ntBASIC0.51□□□□□ -2.33
CCDC87Q9NVE4 RNU6-630P-201ENST00000391258 106 ntBASIC0.51□□□□□ -2.33
CCDC87Q9NVE4 RNA5SP285-201ENST00000516619 119 ntBASIC0.51□□□□□ -2.33
CCDC87Q9NVE4 SNORA25.4-201ENST00000363666 124 ntBASIC0.5□□□□□ -2.33
CCDC87Q9NVE4 RNU6-815P-201ENST00000384080 113 ntBASIC0.5□□□□□ -2.33
CCDC87Q9NVE4 RNU6-175P-201ENST00000516896 107 ntBASIC0.5□□□□□ -2.33
CCDC87Q9NVE4 SCARNA11.2-201ENST00000517183 154 ntBASIC0.5□□□□□ -2.33
CCDC87Q9NVE4 U6.96-201ENST00000636425 70 ntBASIC0.5□□□□□ -2.33
CCDC87Q9NVE4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.49□□□□□ -2.33
CCDC87Q9NVE4 RNA5SP215-201ENST00000363440 122 ntBASIC0.49□□□□□ -2.33
CCDC87Q9NVE4 SNORA33.1-201ENST00000364957 130 ntBASIC0.49□□□□□ -2.33
CCDC87Q9NVE4 RNU6-800P-201ENST00000384473 103 ntBASIC0.49□□□□□ -2.33
CCDC87Q9NVE4 RNU6-127P-201ENST00000390897 107 ntBASIC0.49□□□□□ -2.33
CCDC87Q9NVE4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.49□□□□□ -2.33
CCDC87Q9NVE4 MIR106A-201ENST00000384870 81 ntBASIC0.48□□□□□ -2.33
CCDC87Q9NVE4 MIR4315-1-201ENST00000636800 73 ntBASIC0.47□□□□□ -2.33
CCDC87Q9NVE4 MIR4315-2-201ENST00000640925 73 ntBASIC0.47□□□□□ -2.33
CCDC87Q9NVE4 MIR892B-201ENST00000401279 77 ntBASIC0.46□□□□□ -2.34
CCDC87Q9NVE4 RNU6-1089P-201ENST00000516473 104 ntBASIC0.46□□□□□ -2.34
CCDC87Q9NVE4 RN7SL660P-201ENST00000614852 299 ntBASIC0.46□□□□□ -2.34
CCDC87Q9NVE4 AC108740.1-201ENST00000498629 225 ntBASIC0.45□□□□□ -2.34
CCDC87Q9NVE4 AC005520.4-201ENST00000604337 90 ntBASIC0.45□□□□□ -2.34
CCDC87Q9NVE4 RNU6-1036P-201ENST00000383959 104 ntBASIC0.44□□□□□ -2.34
CCDC87Q9NVE4 RNU6-788P-201ENST00000390967 104 ntBASIC0.44□□□□□ -2.34
CCDC87Q9NVE4 Y_RNA.375-201ENST00000365625 101 ntBASIC0.43□□□□□ -2.34
CCDC87Q9NVE4 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.43□□□□□ -2.34
CCDC87Q9NVE4 RNU6-542P-201ENST00000516405 103 ntBASIC0.42□□□□□ -2.34
CCDC87Q9NVE4 MIR4743-201ENST00000584576 69 ntBASIC0.42□□□□□ -2.34
CCDC87Q9NVE4 MIR6086-201ENST00000638065 55 ntBASIC0.42□□□□□ -2.34
CCDC87Q9NVE4 SNORA49-201ENST00000386157 136 ntBASIC0.41□□□□□ -2.34
CCDC87Q9NVE4 RNA5SP134-201ENST00000516492 96 ntBASIC0.41□□□□□ -2.34
CCDC87Q9NVE4 SNORD115-25-201ENST00000362619 82 ntBASIC0.4□□□□□ -2.35
CCDC87Q9NVE4 RNU6-302P-201ENST00000365249 107 ntBASIC0.4□□□□□ -2.35
CCDC87Q9NVE4 CYP3A54P-201ENST00000566950 75 ntBASIC0.4□□□□□ -2.35
CCDC87Q9NVE4 AC103706.3-201ENST00000636297 85 ntBASIC0.4□□□□□ -2.35
CCDC87Q9NVE4 Y_RNA.386-201ENST00000383913 105 ntBASIC0.39□□□□□ -2.35
CCDC87Q9NVE4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.39□□□□□ -2.35
CCDC87Q9NVE4 MIR6773-201ENST00000612812 74 ntBASIC0.39□□□□□ -2.35
CCDC87Q9NVE4 U2.7-201ENST00000619197 100 ntBASIC0.39□□□□□ -2.35
CCDC87Q9NVE4 RNA5SP98-201ENST00000363158 137 ntBASIC0.38□□□□□ -2.35
CCDC87Q9NVE4 RNU6-471P-201ENST00000383944 106 ntBASIC0.38□□□□□ -2.35
CCDC87Q9NVE4 MIR548C-201ENST00000384815 97 ntBASIC0.38□□□□□ -2.35
CCDC87Q9NVE4 MIR610-201ENST00000385139 96 ntBASIC0.38□□□□□ -2.35
CCDC87Q9NVE4 MIR6718-201ENST00000616153 80 ntBASIC0.38□□□□□ -2.35
CCDC87Q9NVE4 MIR643-201ENST00000385267 97 ntBASIC0.37□□□□□ -2.35
CCDC87Q9NVE4 AC125388.1-201ENST00000459631 156 ntBASIC0.37□□□□□ -2.35
CCDC87Q9NVE4 CR383656.4-201ENST00000546909 122 ntBASIC0.37□□□□□ -2.35
CCDC87Q9NVE4 MIR4511-201ENST00000582784 87 ntBASIC0.37□□□□□ -2.35
CCDC87Q9NVE4 MIR6759-201ENST00000638110 65 ntBASIC0.37□□□□□ -2.35
CCDC87Q9NVE4 MIR329-2-201ENST00000385029 84 ntBASIC0.35□□□□□ -2.35
CCDC87Q9NVE4 MIR517B-201ENST00000385102 67 ntBASIC0.35□□□□□ -2.35
CCDC87Q9NVE4 RNA5SP299-201ENST00000391203 116 ntBASIC0.35□□□□□ -2.35
CCDC87Q9NVE4 AL021921.1-201ENST00000442774 93 ntBASIC0.35□□□□□ -2.35
CCDC87Q9NVE4 RNU6-502P-201ENST00000362419 108 ntBASIC0.34□□□□□ -2.36
CCDC87Q9NVE4 SNORA42.1-201ENST00000363515 137 ntBASIC0.34□□□□□ -2.36
CCDC87Q9NVE4 RNU6-337P-201ENST00000391243 106 ntBASIC0.34□□□□□ -2.36
CCDC87Q9NVE4 RNA5SP470-201ENST00000516463 106 ntBASIC0.34□□□□□ -2.36
CCDC87Q9NVE4 RNU6-180P-201ENST00000516697 61 ntBASIC0.34□□□□□ -2.36
CCDC87Q9NVE4 MIR148A-201ENST00000362215 68 ntBASIC0.33□□□□□ -2.36
CCDC87Q9NVE4 RNU7-174P-201ENST00000516248 59 ntBASIC0.32□□□□□ -2.36
CCDC87Q9NVE4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.32□□□□□ -2.36
CCDC87Q9NVE4 MIR6514-201ENST00000622549 70 ntBASIC0.32□□□□□ -2.36
CCDC87Q9NVE4 RNU6-698P-201ENST00000363523 107 ntBASIC0.31□□□□□ -2.36
CCDC87Q9NVE4 RNU6-34P-201ENST00000364874 107 ntBASIC0.31□□□□□ -2.36
CCDC87Q9NVE4 Y_RNA.340-201ENST00000365330 92 ntBASIC0.31□□□□□ -2.36
CCDC87Q9NVE4 MIRLET7B-201ENST00000385140 83 ntBASIC0.31□□□□□ -2.36
CCDC87Q9NVE4 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
CCDC87Q9NVE4 MIR1255B2-201ENST00000408618 67 ntBASIC0.3□□□□□ -2.36
CCDC87Q9NVE4 MIR548H2-201ENST00000408874 88 ntBASIC0.3□□□□□ -2.36
CCDC87Q9NVE4 RNA5SP163-201ENST00000410304 99 ntBASIC0.3□□□□□ -2.36
CCDC87Q9NVE4 AP000676.1-201ENST00000533307 52 ntBASIC0.29□□□□□ -2.36
CCDC87Q9NVE4 AC090617.8-201ENST00000623339 167 ntBASIC0.29□□□□□ -2.36
CCDC87Q9NVE4 MIR5190-201ENST00000581537 80 ntBASIC0.28□□□□□ -2.36
CCDC87Q9NVE4 AC104408.1-201ENST00000605241 170 ntBASIC0.28□□□□□ -2.36
CCDC87Q9NVE4 RNA5SP214-201ENST00000363378 118 ntBASIC0.27□□□□□ -2.37
CCDC87Q9NVE4 SNORD113-2-201ENST00000391082 72 ntBASIC0.27□□□□□ -2.37
CCDC87Q9NVE4 MIR4636-201ENST00000582271 80 ntBASIC0.27□□□□□ -2.37
CCDC87Q9NVE4 MIR548V-201ENST00000584165 80 ntBASIC0.27□□□□□ -2.37
CCDC87Q9NVE4 SCARNA21.1-201ENST00000515996 128 ntBASIC0.26□□□□□ -2.37
CCDC87Q9NVE4 RNU6-518P-201ENST00000516056 96 ntBASIC0.26□□□□□ -2.37
CCDC87Q9NVE4 RNU7-154P-201ENST00000516194 62 ntBASIC0.26□□□□□ -2.37
CCDC87Q9NVE4 MIR1265-201ENST00000408444 86 ntBASIC0.25□□□□□ -2.37
CCDC87Q9NVE4 RNU7-165P-201ENST00000458864 60 ntBASIC0.25□□□□□ -2.37
CCDC87Q9NVE4 MIR593-201ENST00000384856 100 ntBASIC0.24□□□□□ -2.37
CCDC87Q9NVE4 MIR145-201ENST00000384967 88 ntBASIC0.24□□□□□ -2.37
CCDC87Q9NVE4 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.24□□□□□ -2.37
CCDC87Q9NVE4 RNU7-159P-201ENST00000459284 62 ntBASIC0.24□□□□□ -2.37
CCDC87Q9NVE4 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC87Q9NVE4 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 218.5 ms