Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 MIR548AG1-201ENST00000579932 66 ntBASIC0.6□□□□□ -2.31
SSU72Q9NP77 MIR6835-201ENST00000621552 64 ntBASIC0.6□□□□□ -2.31
SSU72Q9NP77 MIR6767-201ENST00000637302 66 ntBASIC0.6□□□□□ -2.31
SSU72Q9NP77 RNU6-1079P-201ENST00000362861 110 ntBASIC0.59□□□□□ -2.31
SSU72Q9NP77 RNU6-815P-201ENST00000384080 113 ntBASIC0.59□□□□□ -2.31
SSU72Q9NP77 RNU6-518P-201ENST00000516056 96 ntBASIC0.59□□□□□ -2.31
SSU72Q9NP77 RNU7-129P-201ENST00000516128 62 ntBASIC0.59□□□□□ -2.31
SSU72Q9NP77 CYP3A137P-201ENST00000562436 69 ntBASIC0.59□□□□□ -2.31
SSU72Q9NP77 MIR5000-201ENST00000577717 103 ntBASIC0.59□□□□□ -2.31
SSU72Q9NP77 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.59□□□□□ -2.32
SSU72Q9NP77 SNORA9.1-201ENST00000362412 131 ntBASIC0.58□□□□□ -2.32
SSU72Q9NP77 RNU6-829P-201ENST00000363700 112 ntBASIC0.58□□□□□ -2.32
SSU72Q9NP77 SNORA41B-201ENST00000384785 128 ntBASIC0.58□□□□□ -2.32
SSU72Q9NP77 MIRLET7B-201ENST00000385140 83 ntBASIC0.58□□□□□ -2.32
SSU72Q9NP77 AL021921.1-201ENST00000442774 93 ntBASIC0.58□□□□□ -2.32
SSU72Q9NP77 SCARNA11.2-201ENST00000517183 154 ntBASIC0.58□□□□□ -2.32
SSU72Q9NP77 RNU6-446P-201ENST00000362827 106 ntBASIC0.57□□□□□ -2.32
SSU72Q9NP77 MIR106A-201ENST00000384870 81 ntBASIC0.57□□□□□ -2.32
SSU72Q9NP77 RNU6-127P-201ENST00000390897 107 ntBASIC0.57□□□□□ -2.32
SSU72Q9NP77 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.56□□□□□ -2.32
SSU72Q9NP77 RNA5SP121-201ENST00000516537 101 ntBASIC0.56□□□□□ -2.32
SSU72Q9NP77 AC022709.1-201ENST00000615967 87 ntBASIC0.56□□□□□ -2.32
SSU72Q9NP77 MIR6515-201ENST00000619843 57 ntBASIC0.56□□□□□ -2.32
SSU72Q9NP77 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.55□□□□□ -2.32
SSU72Q9NP77 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.55□□□□□ -2.32
SSU72Q9NP77 MIR3938-201ENST00000582157 103 ntBASIC0.55□□□□□ -2.32
SSU72Q9NP77 SNORD115-25-201ENST00000362619 82 ntBASIC0.54□□□□□ -2.32
SSU72Q9NP77 Y_RNA.74-201ENST00000362911 99 ntBASIC0.54□□□□□ -2.32
SSU72Q9NP77 RNU6-782P-201ENST00000516852 104 ntBASIC0.54□□□□□ -2.32
SSU72Q9NP77 MIR7111-201ENST00000619751 72 ntBASIC0.54□□□□□ -2.32
SSU72Q9NP77 MIR598-201ENST00000384868 97 ntBASIC0.53□□□□□ -2.32
SSU72Q9NP77 MIR489-201ENST00000384923 84 ntBASIC0.53□□□□□ -2.32
SSU72Q9NP77 MTND4LP19-201ENST00000403051 166 ntBASIC0.53□□□□□ -2.32
SSU72Q9NP77 MIR548H2-201ENST00000408874 88 ntBASIC0.53□□□□□ -2.32
SSU72Q9NP77 MIR508-201ENST00000384857 115 ntBASIC0.52□□□□□ -2.33
SSU72Q9NP77 MIR216A-201ENST00000385063 110 ntBASIC0.52□□□□□ -2.33
SSU72Q9NP77 Y_RNA.282-201ENST00000364793 102 ntBASIC0.51□□□□□ -2.33
SSU72Q9NP77 AC069113.3-201ENST00000521019 150 ntBASIC0.51□□□□□ -2.33
SSU72Q9NP77 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
SSU72Q9NP77 uc_338.17-201ENST00000619633 179 ntBASIC0.51□□□□□ -2.33
SSU72Q9NP77 RNA5SP62-201ENST00000363457 110 ntBASIC0.5□□□□□ -2.33
SSU72Q9NP77 RNU7-154P-201ENST00000516194 62 ntBASIC0.5□□□□□ -2.33
SSU72Q9NP77 Y_RNA.236-201ENST00000364427 111 ntBASIC0.49□□□□□ -2.33
SSU72Q9NP77 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.49□□□□□ -2.33
SSU72Q9NP77 AP000676.1-201ENST00000533307 52 ntBASIC0.49□□□□□ -2.33
SSU72Q9NP77 RNA5SP347-201ENST00000362445 119 ntBASIC0.48□□□□□ -2.33
SSU72Q9NP77 SNORD115-23-201ENST00000364461 82 ntBASIC0.48□□□□□ -2.33
SSU72Q9NP77 RNA5SP470-201ENST00000516463 106 ntBASIC0.48□□□□□ -2.33
SSU72Q9NP77 MIR4714-201ENST00000580728 77 ntBASIC0.48□□□□□ -2.33
SSU72Q9NP77 MIR643-201ENST00000385267 97 ntBASIC0.47□□□□□ -2.33
SSU72Q9NP77 AC108740.1-201ENST00000498629 225 ntBASIC0.47□□□□□ -2.33
SSU72Q9NP77 SNORD113-4-201ENST00000364802 75 ntBASIC0.46□□□□□ -2.34
SSU72Q9NP77 SNORD116-16-201ENST00000384533 92 ntBASIC0.46□□□□□ -2.34
SSU72Q9NP77 MIR6513-201ENST00000621188 64 ntBASIC0.46□□□□□ -2.34
SSU72Q9NP77 MIR5087-201ENST00000635826 76 ntBASIC0.45□□□□□ -2.34
SSU72Q9NP77 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
SSU72Q9NP77 AC090625.1-201ENST00000357130 210 ntBASIC0.43□□□□□ -2.34
SSU72Q9NP77 RNA5SP98-201ENST00000363158 137 ntBASIC0.43□□□□□ -2.34
SSU72Q9NP77 RNA5SP499-201ENST00000363982 119 ntBASIC0.43□□□□□ -2.34
SSU72Q9NP77 RNU6-1327P-201ENST00000365302 105 ntBASIC0.43□□□□□ -2.34
SSU72Q9NP77 RNU6-180P-201ENST00000516697 61 ntBASIC0.43□□□□□ -2.34
SSU72Q9NP77 MIR527-201ENST00000385244 85 ntBASIC0.42□□□□□ -2.34
SSU72Q9NP77 AL353803.5-201ENST00000599815 141 ntBASIC0.42□□□□□ -2.34
SSU72Q9NP77 RNU6-987P-201ENST00000384759 104 ntBASIC0.41□□□□□ -2.34
SSU72Q9NP77 RNU4-37P-201ENST00000410214 84 ntBASIC0.41□□□□□ -2.34
SSU72Q9NP77 RNA5SP480-201ENST00000516840 109 ntBASIC0.41□□□□□ -2.34
SSU72Q9NP77 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.41□□□□□ -2.34
SSU72Q9NP77 PVT1_3.1-201ENST00000620853 95 ntBASIC0.41□□□□□ -2.34
SSU72Q9NP77 MIR6514-201ENST00000622549 70 ntBASIC0.41□□□□□ -2.34
SSU72Q9NP77 SNORD114-26-201ENST00000363543 72 ntBASIC0.4□□□□□ -2.35
SSU72Q9NP77 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.4□□□□□ -2.35
SSU72Q9NP77 RN7SL793P-201ENST00000583259 296 ntBASIC0.4□□□□□ -2.35
SSU72Q9NP77 MIR6507-201ENST00000613630 70 ntBASIC0.4□□□□□ -2.35
SSU72Q9NP77 Y_RNA.109-201ENST00000363215 102 ntBASIC0.39□□□□□ -2.35
SSU72Q9NP77 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
SSU72Q9NP77 RNU6-614P-201ENST00000384369 107 ntBASIC0.39□□□□□ -2.35
SSU72Q9NP77 AC114737.2-201ENST00000421583 173 ntBASIC0.39□□□□□ -2.35
SSU72Q9NP77 RNU7-55P-201ENST00000459426 62 ntBASIC0.39□□□□□ -2.35
SSU72Q9NP77 Y_RNA.698-201ENST00000516798 118 ntBASIC0.39□□□□□ -2.35
SSU72Q9NP77 CR383656.4-201ENST00000546909 122 ntBASIC0.39□□□□□ -2.35
SSU72Q9NP77 U6.59-201ENST00000615686 107 ntBASIC0.39□□□□□ -2.35
SSU72Q9NP77 SNORD114-23-201ENST00000363536 72 ntBASIC0.38□□□□□ -2.35
SSU72Q9NP77 RNA5SP325-201ENST00000363756 130 ntBASIC0.38□□□□□ -2.35
SSU72Q9NP77 MIR936-201ENST00000401264 98 ntBASIC0.38□□□□□ -2.35
SSU72Q9NP77 RNA5SP163-201ENST00000410304 99 ntBASIC0.38□□□□□ -2.35
SSU72Q9NP77 RNU6-231P-201ENST00000517122 103 ntBASIC0.37□□□□□ -2.35
SSU72Q9NP77 MIR4464-201ENST00000580818 92 ntBASIC0.37□□□□□ -2.35
SSU72Q9NP77 MIR4315-1-201ENST00000636800 73 ntBASIC0.37□□□□□ -2.35
SSU72Q9NP77 MIR4315-2-201ENST00000640925 73 ntBASIC0.37□□□□□ -2.35
SSU72Q9NP77 Y_RNA.540-201ENST00000384638 111 ntBASIC0.36□□□□□ -2.35
SSU72Q9NP77 MIR4432-201ENST00000581823 84 ntBASIC0.36□□□□□ -2.35
SSU72Q9NP77 AC010487.4-201ENST00000637027 61 ntBASIC0.36□□□□□ -2.35
SSU72Q9NP77 RNU6-246P-201ENST00000384702 107 ntBASIC0.35□□□□□ -2.35
SSU72Q9NP77 MIR4711-201ENST00000578274 70 ntBASIC0.35□□□□□ -2.35
SSU72Q9NP77 RNU6-458P-201ENST00000384179 107 ntBASIC0.34□□□□□ -2.36
SSU72Q9NP77 MIR193B-201ENST00000384907 83 ntBASIC0.34□□□□□ -2.36
SSU72Q9NP77 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.34□□□□□ -2.36
SSU72Q9NP77 U6.58-201ENST00000613107 107 ntBASIC0.34□□□□□ -2.36
SSU72Q9NP77 uc_338.36-201ENST00000622331 158 ntBASIC0.34□□□□□ -2.36
SSU72Q9NP77 SNORD1B-201ENST00000363091 84 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 186 ms