Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MIR216A-201ENST00000385063 110 ntBASIC0.58□□□□□ -2.32
CLIP3Q96DZ5 RNA5SP480-201ENST00000516840 109 ntBASIC0.58□□□□□ -2.32
CLIP3Q96DZ5 SNORD44.1-201ENST00000363202 61 ntBASIC0.57□□□□□ -2.32
CLIP3Q96DZ5 RNU6-987P-201ENST00000384759 104 ntBASIC0.57□□□□□ -2.32
CLIP3Q96DZ5 MIR760-201ENST00000390220 80 ntBASIC0.57□□□□□ -2.32
CLIP3Q96DZ5 RNU6-1246P-201ENST00000391064 107 ntBASIC0.57□□□□□ -2.32
CLIP3Q96DZ5 MIR3925-201ENST00000584674 77 ntBASIC0.57□□□□□ -2.32
CLIP3Q96DZ5 Y_RNA.236-201ENST00000364427 111 ntBASIC0.56□□□□□ -2.32
CLIP3Q96DZ5 Y_RNA.325-201ENST00000365171 122 ntBASIC0.56□□□□□ -2.32
CLIP3Q96DZ5 SNORD113-2-201ENST00000391082 72 ntBASIC0.56□□□□□ -2.32
CLIP3Q96DZ5 MIR3938-201ENST00000582157 103 ntBASIC0.56□□□□□ -2.32
CLIP3Q96DZ5 MIR6773-201ENST00000612812 74 ntBASIC0.56□□□□□ -2.32
CLIP3Q96DZ5 RN7SL660P-201ENST00000614852 299 ntBASIC0.56□□□□□ -2.32
CLIP3Q96DZ5 Y_RNA.246-201ENST00000364495 108 ntBASIC0.55□□□□□ -2.32
CLIP3Q96DZ5 RNA5SP128-201ENST00000365305 116 ntBASIC0.55□□□□□ -2.32
CLIP3Q96DZ5 MIR936-201ENST00000401264 98 ntBASIC0.55□□□□□ -2.32
CLIP3Q96DZ5 RNU4-37P-201ENST00000410214 84 ntBASIC0.55□□□□□ -2.32
CLIP3Q96DZ5 SNORA68.3-201ENST00000515906 83 ntBASIC0.55□□□□□ -2.32
CLIP3Q96DZ5 RN7SL793P-201ENST00000583259 296 ntBASIC0.55□□□□□ -2.32
CLIP3Q96DZ5 Y_RNA.540-201ENST00000384638 111 ntBASIC0.54□□□□□ -2.32
CLIP3Q96DZ5 SNORA41B-201ENST00000384785 128 ntBASIC0.54□□□□□ -2.32
CLIP3Q96DZ5 MIR519A2-201ENST00000384990 87 ntBASIC0.54□□□□□ -2.32
CLIP3Q96DZ5 MIR876-201ENST00000401147 81 ntBASIC0.54□□□□□ -2.32
CLIP3Q96DZ5 MIR1255B2-201ENST00000408618 67 ntBASIC0.54□□□□□ -2.32
CLIP3Q96DZ5 AL021921.1-201ENST00000442774 93 ntBASIC0.54□□□□□ -2.32
CLIP3Q96DZ5 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.54□□□□□ -2.32
CLIP3Q96DZ5 SNORD2-201ENST00000459163 69 ntBASIC0.54□□□□□ -2.32
CLIP3Q96DZ5 RNU6-863P-201ENST00000515989 104 ntBASIC0.54□□□□□ -2.32
CLIP3Q96DZ5 MIR548AG1-201ENST00000579932 66 ntBASIC0.54□□□□□ -2.32
CLIP3Q96DZ5 RNU6-502P-201ENST00000362419 108 ntBASIC0.53□□□□□ -2.32
CLIP3Q96DZ5 MIR92A1-201ENST00000385233 78 ntBASIC0.53□□□□□ -2.32
CLIP3Q96DZ5 RNU6-518P-201ENST00000516056 96 ntBASIC0.53□□□□□ -2.32
CLIP3Q96DZ5 AC084368.1-201ENST00000620935 65 ntBASIC0.53□□□□□ -2.32
CLIP3Q96DZ5 MIR5087-201ENST00000635826 76 ntBASIC0.53□□□□□ -2.32
CLIP3Q96DZ5 MIR499B-201ENST00000636498 73 ntBASIC0.53□□□□□ -2.32
CLIP3Q96DZ5 SNORA9.1-201ENST00000362412 131 ntBASIC0.52□□□□□ -2.33
CLIP3Q96DZ5 SNORD114-26-201ENST00000363543 72 ntBASIC0.52□□□□□ -2.33
CLIP3Q96DZ5 RNU6-1036P-201ENST00000383959 104 ntBASIC0.52□□□□□ -2.33
CLIP3Q96DZ5 MIRLET7D-201ENST00000362263 87 ntBASIC0.51□□□□□ -2.33
CLIP3Q96DZ5 SNORD113-4-201ENST00000364802 75 ntBASIC0.51□□□□□ -2.33
CLIP3Q96DZ5 MIRLET7B-201ENST00000385140 83 ntBASIC0.51□□□□□ -2.33
CLIP3Q96DZ5 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.51□□□□□ -2.33
CLIP3Q96DZ5 MIR103A1-201ENST00000362165 78 ntBASIC0.5□□□□□ -2.33
CLIP3Q96DZ5 Y_RNA.74-201ENST00000362911 99 ntBASIC0.5□□□□□ -2.33
CLIP3Q96DZ5 SNORD114-23-201ENST00000363536 72 ntBASIC0.5□□□□□ -2.33
CLIP3Q96DZ5 RNA5SP499-201ENST00000363982 119 ntBASIC0.5□□□□□ -2.33
CLIP3Q96DZ5 RNU6-614P-201ENST00000384369 107 ntBASIC0.49□□□□□ -2.33
CLIP3Q96DZ5 MIR4711-201ENST00000578274 70 ntBASIC0.49□□□□□ -2.33
CLIP3Q96DZ5 U6.59-201ENST00000615686 107 ntBASIC0.49□□□□□ -2.33
CLIP3Q96DZ5 SNORD115-25-201ENST00000362619 82 ntBASIC0.48□□□□□ -2.33
CLIP3Q96DZ5 Y_RNA.282-201ENST00000364793 102 ntBASIC0.48□□□□□ -2.33
CLIP3Q96DZ5 MIR106A-201ENST00000384870 81 ntBASIC0.48□□□□□ -2.33
CLIP3Q96DZ5 AC114737.2-201ENST00000421583 173 ntBASIC0.48□□□□□ -2.33
CLIP3Q96DZ5 RNU7-154P-201ENST00000516194 62 ntBASIC0.48□□□□□ -2.33
CLIP3Q96DZ5 AC090625.1-201ENST00000357130 210 ntBASIC0.47□□□□□ -2.33
CLIP3Q96DZ5 SCARNA11.2-201ENST00000517183 154 ntBASIC0.47□□□□□ -2.33
CLIP3Q96DZ5 SNORD116-16-201ENST00000384533 92 ntBASIC0.46□□□□□ -2.34
CLIP3Q96DZ5 RNA5SP193-201ENST00000410353 107 ntBASIC0.46□□□□□ -2.34
CLIP3Q96DZ5 RNU7-129P-201ENST00000516128 62 ntBASIC0.46□□□□□ -2.34
CLIP3Q96DZ5 RNU6-782P-201ENST00000516852 104 ntBASIC0.46□□□□□ -2.34
CLIP3Q96DZ5 RNU6-127P-201ENST00000390897 107 ntBASIC0.45□□□□□ -2.34
CLIP3Q96DZ5 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.45□□□□□ -2.34
CLIP3Q96DZ5 MIR6779-201ENST00000617283 64 ntBASIC0.45□□□□□ -2.34
CLIP3Q96DZ5 SNORD115-23-201ENST00000364461 82 ntBASIC0.44□□□□□ -2.34
CLIP3Q96DZ5 RNU6-815P-201ENST00000384080 113 ntBASIC0.44□□□□□ -2.34
CLIP3Q96DZ5 MIR193B-201ENST00000384907 83 ntBASIC0.44□□□□□ -2.34
CLIP3Q96DZ5 RNA5SP470-201ENST00000516463 106 ntBASIC0.44□□□□□ -2.34
CLIP3Q96DZ5 AC010487.4-201ENST00000637027 61 ntBASIC0.44□□□□□ -2.34
CLIP3Q96DZ5 RNU6-141P-201ENST00000410499 105 ntBASIC0.43□□□□□ -2.34
CLIP3Q96DZ5 RNU6-1327P-201ENST00000365302 105 ntBASIC0.42□□□□□ -2.34
CLIP3Q96DZ5 MIR548H2-201ENST00000408874 88 ntBASIC0.42□□□□□ -2.34
CLIP3Q96DZ5 RNU6-520P-201ENST00000384717 104 ntBASIC0.41□□□□□ -2.34
CLIP3Q96DZ5 MIR527-201ENST00000385244 85 ntBASIC0.41□□□□□ -2.34
CLIP3Q96DZ5 RNU6-231P-201ENST00000517122 103 ntBASIC0.41□□□□□ -2.34
CLIP3Q96DZ5 MIR7978-201ENST00000636158 59 ntBASIC0.41□□□□□ -2.34
CLIP3Q96DZ5 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
CLIP3Q96DZ5 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.4□□□□□ -2.34
CLIP3Q96DZ5 AP000676.1-201ENST00000533307 52 ntBASIC0.4□□□□□ -2.35
CLIP3Q96DZ5 MIR1273G-201ENST00000577677 100 ntBASIC0.4□□□□□ -2.35
CLIP3Q96DZ5 Y_RNA.109-201ENST00000363215 102 ntBASIC0.39□□□□□ -2.35
CLIP3Q96DZ5 VTRNA1-3-201ENST00000365645 89 ntBASIC0.39□□□□□ -2.35
CLIP3Q96DZ5 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
CLIP3Q96DZ5 AC069113.3-201ENST00000521019 150 ntBASIC0.39□□□□□ -2.35
CLIP3Q96DZ5 AL353803.5-201ENST00000599815 141 ntBASIC0.39□□□□□ -2.35
CLIP3Q96DZ5 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.39□□□□□ -2.35
CLIP3Q96DZ5 RNU6-1312P-201ENST00000362425 108 ntBASIC0.38□□□□□ -2.35
CLIP3Q96DZ5 RNA5SP62-201ENST00000363457 110 ntBASIC0.38□□□□□ -2.35
CLIP3Q96DZ5 Y_RNA.698-201ENST00000516798 118 ntBASIC0.38□□□□□ -2.35
CLIP3Q96DZ5 SNORD1B-201ENST00000363091 84 ntBASIC0.37□□□□□ -2.35
CLIP3Q96DZ5 RNA5SP98-201ENST00000363158 137 ntBASIC0.37□□□□□ -2.35
CLIP3Q96DZ5 RNU6-246P-201ENST00000384702 107 ntBASIC0.37□□□□□ -2.35
CLIP3Q96DZ5 AC108740.1-201ENST00000498629 225 ntBASIC0.37□□□□□ -2.35
CLIP3Q96DZ5 RNA5SP134-201ENST00000516492 96 ntBASIC0.37□□□□□ -2.35
CLIP3Q96DZ5 MIR643-201ENST00000385267 97 ntBASIC0.36□□□□□ -2.35
CLIP3Q96DZ5 RNU7-55P-201ENST00000459426 62 ntBASIC0.36□□□□□ -2.35
CLIP3Q96DZ5 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.36□□□□□ -2.35
CLIP3Q96DZ5 SNORA40.16-201ENST00000517238 121 ntBASIC0.36□□□□□ -2.35
CLIP3Q96DZ5 RNU6-458P-201ENST00000384179 107 ntBASIC0.35□□□□□ -2.35
CLIP3Q96DZ5 RNU7-119P-201ENST00000459279 63 ntBASIC0.35□□□□□ -2.35
CLIP3Q96DZ5 MIR4464-201ENST00000580818 92 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 279.8 ms