Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.09□□□□□ -2.42
PTCHD3Q3KNS1 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.09□□□□□ -2.42
PTCHD3Q3KNS1 AC145423.2-201ENST00000610631 239 ntBASIC-0.09□□□□□ -2.42
PTCHD3Q3KNS1 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.1□□□□□ -2.43
PTCHD3Q3KNS1 RNA5SP173-201ENST00000364857 136 ntBASIC-0.1□□□□□ -2.43
PTCHD3Q3KNS1 AC244250.2-201ENST00000418731 148 ntBASIC-0.11□□□□□ -2.43
PTCHD3Q3KNS1 MIR4802-201ENST00000581881 80 ntBASIC-0.11□□□□□ -2.43
PTCHD3Q3KNS1 MIR6739-201ENST00000622461 75 ntBASIC-0.11□□□□□ -2.43
PTCHD3Q3KNS1 SNORA18.1-201ENST00000363418 128 ntBASIC-0.12□□□□□ -2.43
PTCHD3Q3KNS1 RNA5SP368-201ENST00000364298 116 ntBASIC-0.12□□□□□ -2.43
PTCHD3Q3KNS1 Z95118.1-201ENST00000421372 247 ntBASIC-0.12□□□□□ -2.43
PTCHD3Q3KNS1 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.12□□□□□ -2.43
PTCHD3Q3KNS1 MIR655-201ENST00000362159 97 ntBASIC-0.13□□□□□ -2.43
PTCHD3Q3KNS1 SNORA32.1-201ENST00000364514 115 ntBASIC-0.13□□□□□ -2.43
PTCHD3Q3KNS1 RNU6-573P-201ENST00000383938 106 ntBASIC-0.13□□□□□ -2.43
PTCHD3Q3KNS1 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.13□□□□□ -2.43
PTCHD3Q3KNS1 AP000676.1-201ENST00000533307 52 ntBASIC-0.13□□□□□ -2.43
PTCHD3Q3KNS1 RNU6-502P-201ENST00000362419 108 ntBASIC-0.14□□□□□ -2.43
PTCHD3Q3KNS1 RNU6-330P-201ENST00000363015 107 ntBASIC-0.14□□□□□ -2.43
PTCHD3Q3KNS1 SNORA8.1-201ENST00000384250 140 ntBASIC-0.14□□□□□ -2.43
PTCHD3Q3KNS1 MIR521-2-201ENST00000384818 87 ntBASIC-0.14□□□□□ -2.43
PTCHD3Q3KNS1 snoU13.13-201ENST00000458842 104 ntBASIC-0.14□□□□□ -2.43
PTCHD3Q3KNS1 RNU6-758P-201ENST00000516292 89 ntBASIC-0.14□□□□□ -2.43
PTCHD3Q3KNS1 RNA5SP147-201ENST00000516493 109 ntBASIC-0.14□□□□□ -2.43
PTCHD3Q3KNS1 RNU6-900P-201ENST00000384498 102 ntBASIC-0.15□□□□□ -2.43
PTCHD3Q3KNS1 RNU6-30P-201ENST00000384561 107 ntBASIC-0.15□□□□□ -2.43
PTCHD3Q3KNS1 snoU13.19-201ENST00000459148 104 ntBASIC-0.15□□□□□ -2.43
PTCHD3Q3KNS1 SNORD49B-201ENST00000365172 72 ntBASIC-0.16□□□□□ -2.44
PTCHD3Q3KNS1 MIR214-201ENST00000385214 110 ntBASIC-0.16□□□□□ -2.44
PTCHD3Q3KNS1 MIR6773-201ENST00000612812 74 ntBASIC-0.16□□□□□ -2.44
PTCHD3Q3KNS1 MIR9-2-201ENST00000384838 87 ntBASIC-0.17□□□□□ -2.44
PTCHD3Q3KNS1 RNU7-55P-201ENST00000459426 62 ntBASIC-0.17□□□□□ -2.44
PTCHD3Q3KNS1 MIR4484-201ENST00000582855 83 ntBASIC-0.17□□□□□ -2.44
PTCHD3Q3KNS1 AP001180.6-201ENST00000584918 159 ntBASIC-0.17□□□□□ -2.44
PTCHD3Q3KNS1 U6.96-201ENST00000636425 70 ntBASIC-0.17□□□□□ -2.44
PTCHD3Q3KNS1 RNU6-1124P-201ENST00000384169 107 ntBASIC-0.18□□□□□ -2.44
PTCHD3Q3KNS1 RNU6-455P-201ENST00000384681 107 ntBASIC-0.18□□□□□ -2.44
PTCHD3Q3KNS1 SNORD114-12-201ENST00000365400 75 ntBASIC-0.19□□□□□ -2.44
PTCHD3Q3KNS1 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.19□□□□□ -2.44
PTCHD3Q3KNS1 SNORD78.1-201ENST00000390866 65 ntBASIC-0.19□□□□□ -2.44
PTCHD3Q3KNS1 RNU6-337P-201ENST00000391243 106 ntBASIC-0.19□□□□□ -2.44
PTCHD3Q3KNS1 SNORD4A-201ENST00000459174 72 ntBASIC-0.19□□□□□ -2.44
PTCHD3Q3KNS1 SNORA72.7-201ENST00000516349 94 ntBASIC-0.2□□□□□ -2.44
PTCHD3Q3KNS1 MIR4645-201ENST00000583158 77 ntBASIC-0.2□□□□□ -2.44
PTCHD3Q3KNS1 MIR3666-201ENST00000607845 111 ntBASIC-0.2□□□□□ -2.44
PTCHD3Q3KNS1 RNU6-228P-201ENST00000362700 106 ntBASIC-0.21□□□□□ -2.44
PTCHD3Q3KNS1 SNORD45.1-201ENST00000363181 77 ntBASIC-0.21□□□□□ -2.44
PTCHD3Q3KNS1 SNORA33.1-201ENST00000364957 130 ntBASIC-0.21□□□□□ -2.44
PTCHD3Q3KNS1 MIR604-201ENST00000384880 94 ntBASIC-0.21□□□□□ -2.44
PTCHD3Q3KNS1 MIRLET7B-201ENST00000385140 83 ntBASIC-0.21□□□□□ -2.44
PTCHD3Q3KNS1 RNU6-279P-201ENST00000391297 101 ntBASIC-0.21□□□□□ -2.44
PTCHD3Q3KNS1 SCARNA18B-201ENST00000458806 135 ntBASIC-0.21□□□□□ -2.44
PTCHD3Q3KNS1 MIR4263-201ENST00000584745 83 ntBASIC-0.21□□□□□ -2.44
PTCHD3Q3KNS1 MIR8053-201ENST00000613344 75 ntBASIC-0.21□□□□□ -2.44
PTCHD3Q3KNS1 RNA5SP25-201ENST00000410815 110 ntBASIC-0.22□□□□□ -2.44
PTCHD3Q3KNS1 SNORD114-28-201ENST00000363610 72 ntBASIC-0.23□□□□□ -2.45
PTCHD3Q3KNS1 MIR1255A-201ENST00000408338 113 ntBASIC-0.23□□□□□ -2.45
PTCHD3Q3KNS1 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.23□□□□□ -2.45
PTCHD3Q3KNS1 MIR4493-201ENST00000584016 73 ntBASIC-0.23□□□□□ -2.45
PTCHD3Q3KNS1 AL590491.3-201ENST00000610731 82 ntBASIC-0.23□□□□□ -2.45
PTCHD3Q3KNS1 MIR8064-201ENST00000612863 90 ntBASIC-0.23□□□□□ -2.45
PTCHD3Q3KNS1 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.24□□□□□ -2.45
PTCHD3Q3KNS1 SNORD114-15-201ENST00000364687 72 ntBASIC-0.24□□□□□ -2.45
PTCHD3Q3KNS1 RNU6-973P-201ENST00000364690 107 ntBASIC-0.24□□□□□ -2.45
PTCHD3Q3KNS1 RNU6-24P-201ENST00000384440 107 ntBASIC-0.24□□□□□ -2.45
PTCHD3Q3KNS1 RNU6-656P-201ENST00000516785 107 ntBASIC-0.24□□□□□ -2.45
PTCHD3Q3KNS1 U7.4-201ENST00000614961 63 ntBASIC-0.24□□□□□ -2.45
PTCHD3Q3KNS1 AC090617.8-201ENST00000623339 167 ntBASIC-0.24□□□□□ -2.45
PTCHD3Q3KNS1 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.25□□□□□ -2.45
PTCHD3Q3KNS1 SNORD56B-201ENST00000384713 71 ntBASIC-0.25□□□□□ -2.45
PTCHD3Q3KNS1 CYP3A54P-201ENST00000566950 75 ntBASIC-0.25□□□□□ -2.45
PTCHD3Q3KNS1 AC108676.2-201ENST00000605225 163 ntBASIC-0.25□□□□□ -2.45
PTCHD3Q3KNS1 RNU6-645P-201ENST00000364649 106 ntBASIC-0.26□□□□□ -2.45
PTCHD3Q3KNS1 RNU6-604P-201ENST00000390917 100 ntBASIC-0.26□□□□□ -2.45
PTCHD3Q3KNS1 RNA5SP300-201ENST00000391197 107 ntBASIC-0.26□□□□□ -2.45
PTCHD3Q3KNS1 RNA5SP470-201ENST00000516463 106 ntBASIC-0.26□□□□□ -2.45
PTCHD3Q3KNS1 Y_RNA.685-201ENST00000516532 108 ntBASIC-0.26□□□□□ -2.45
PTCHD3Q3KNS1 SNORD115-22-201ENST00000364456 82 ntBASIC-0.27□□□□□ -2.45
PTCHD3Q3KNS1 SNORD115-23-201ENST00000364461 82 ntBASIC-0.27□□□□□ -2.45
PTCHD3Q3KNS1 RNU6-857P-201ENST00000515893 110 ntBASIC-0.27□□□□□ -2.45
PTCHD3Q3KNS1 RNA5SP67-201ENST00000516422 131 ntBASIC-0.27□□□□□ -2.45
PTCHD3Q3KNS1 RNU6-70P-201ENST00000516438 60 ntBASIC-0.27□□□□□ -2.45
PTCHD3Q3KNS1 MIR101-1-201ENST00000362265 75 ntBASIC-0.28□□□□□ -2.45
PTCHD3Q3KNS1 AC096531.1-201ENST00000419107 107 ntBASIC-0.28□□□□□ -2.45
PTCHD3Q3KNS1 AL391099.1-201ENST00000624635 187 ntBASIC-0.28□□□□□ -2.45
PTCHD3Q3KNS1 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.29□□□□□ -2.46
PTCHD3Q3KNS1 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.29□□□□□ -2.46
PTCHD3Q3KNS1 uc_338.36-201ENST00000622331 158 ntBASIC-0.29□□□□□ -2.46
PTCHD3Q3KNS1 snoR1.1-201ENST00000628177 80 ntBASIC-0.29□□□□□ -2.46
PTCHD3Q3KNS1 MIR4788-201ENST00000639104 80 ntBASIC-0.29□□□□□ -2.46
PTCHD3Q3KNS1 RNU6-901P-201ENST00000384593 106 ntBASIC-0.3□□□□□ -2.46
PTCHD3Q3KNS1 RPS29P8-201ENST00000445109 171 ntBASIC-0.3□□□□□ -2.46
PTCHD3Q3KNS1 RNA5SP66-201ENST00000517178 101 ntBASIC-0.3□□□□□ -2.46
PTCHD3Q3KNS1 MIR4432-201ENST00000581823 84 ntBASIC-0.3□□□□□ -2.46
PTCHD3Q3KNS1 MIR664A-201ENST00000626086 82 ntBASIC-0.3□□□□□ -2.46
PTCHD3Q3KNS1 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.31□□□□□ -2.46
PTCHD3Q3KNS1 RNU6-587P-201ENST00000391282 106 ntBASIC-0.31□□□□□ -2.46
PTCHD3Q3KNS1 RNA5SP451-201ENST00000410588 110 ntBASIC-0.31□□□□□ -2.46
PTCHD3Q3KNS1 MIR4280-201ENST00000582178 76 ntBASIC-0.31□□□□□ -2.46
PTCHD3Q3KNS1 SNORD114-11-201ENST00000363738 75 ntBASIC-0.32□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 222 ms