Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNA5SP147-201ENST00000516493 109 ntBASIC-0.01□□□□□ -2.41
CIITAP33076 MIR4484-201ENST00000582855 83 ntBASIC-0.01□□□□□ -2.41
CIITAP33076 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.01□□□□□ -2.41
CIITAP33076 SNORD114-15-201ENST00000364687 72 ntBASIC-0.02□□□□□ -2.41
CIITAP33076 RNU6-1124P-201ENST00000384169 107 ntBASIC-0.03□□□□□ -2.41
CIITAP33076 SCARNA18B-201ENST00000458806 135 ntBASIC-0.03□□□□□ -2.41
CIITAP33076 AC021146.9-201ENST00000512503 156 ntBASIC-0.03□□□□□ -2.41
CIITAP33076 MIR3202-2-201ENST00000635980 79 ntBASIC-0.03□□□□□ -2.41
CIITAP33076 MIR1297-201ENST00000637311 77 ntBASIC-0.03□□□□□ -2.41
CIITAP33076 MIR655-201ENST00000362159 97 ntBASIC-0.04□□□□□ -2.42
CIITAP33076 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.04□□□□□ -2.42
CIITAP33076 MIR1255A-201ENST00000408338 113 ntBASIC-0.04□□□□□ -2.42
CIITAP33076 MIR3675-201ENST00000583661 73 ntBASIC-0.04□□□□□ -2.42
CIITAP33076 SNORA32.1-201ENST00000364514 115 ntBASIC-0.05□□□□□ -2.42
CIITAP33076 RNU6-337P-201ENST00000391243 106 ntBASIC-0.05□□□□□ -2.42
CIITAP33076 AC244250.2-201ENST00000418731 148 ntBASIC-0.05□□□□□ -2.42
CIITAP33076 SNORD2-201ENST00000459163 69 ntBASIC-0.05□□□□□ -2.42
CIITAP33076 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.05□□□□□ -2.42
CIITAP33076 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.05□□□□□ -2.42
CIITAP33076 RNU6-502P-201ENST00000362419 108 ntBASIC-0.06□□□□□ -2.42
CIITAP33076 SNORD115-25-201ENST00000362619 82 ntBASIC-0.06□□□□□ -2.42
CIITAP33076 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.06□□□□□ -2.42
CIITAP33076 SNORA8.1-201ENST00000384250 140 ntBASIC-0.06□□□□□ -2.42
CIITAP33076 SNORD78.1-201ENST00000390866 65 ntBASIC-0.06□□□□□ -2.42
CIITAP33076 AP001180.6-201ENST00000584918 159 ntBASIC-0.06□□□□□ -2.42
CIITAP33076 MIR6739-201ENST00000622461 75 ntBASIC-0.06□□□□□ -2.42
CIITAP33076 AC090617.8-201ENST00000623339 167 ntBASIC-0.06□□□□□ -2.42
CIITAP33076 MIR664A-201ENST00000626086 82 ntBASIC-0.06□□□□□ -2.42
CIITAP33076 RNU6-46P-201ENST00000383860 107 ntBASIC-0.07□□□□□ -2.42
CIITAP33076 MIR604-201ENST00000384880 94 ntBASIC-0.07□□□□□ -2.42
CIITAP33076 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
CIITAP33076 RNU6-380P-201ENST00000410207 107 ntBASIC-0.07□□□□□ -2.42
CIITAP33076 RNA5SP67-201ENST00000516422 131 ntBASIC-0.07□□□□□ -2.42
CIITAP33076 RNU6-807P-201ENST00000516805 107 ntBASIC-0.07□□□□□ -2.42
CIITAP33076 AP000676.1-201ENST00000533307 52 ntBASIC-0.07□□□□□ -2.42
CIITAP33076 SNORA33.1-201ENST00000364957 130 ntBASIC-0.08□□□□□ -2.42
CIITAP33076 MIR6773-201ENST00000612812 74 ntBASIC-0.08□□□□□ -2.42
CIITAP33076 MIR4493-201ENST00000584016 73 ntBASIC-0.09□□□□□ -2.42
CIITAP33076 MIR1295B-201ENST00000636144 60 ntBASIC-0.09□□□□□ -2.42
CIITAP33076 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.1□□□□□ -2.43
CIITAP33076 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.1□□□□□ -2.43
CIITAP33076 MIR9-2-201ENST00000384838 87 ntBASIC-0.1□□□□□ -2.43
CIITAP33076 RNU6-279P-201ENST00000391297 101 ntBASIC-0.1□□□□□ -2.43
CIITAP33076 MIR521-2-201ENST00000384818 87 ntBASIC-0.11□□□□□ -2.43
CIITAP33076 RNA5SP225-201ENST00000410874 135 ntBASIC-0.11□□□□□ -2.43
CIITAP33076 AC104692.1-201ENST00000472406 90 ntBASIC-0.11□□□□□ -2.43
CIITAP33076 RNU6-656P-201ENST00000516785 107 ntBASIC-0.11□□□□□ -2.43
CIITAP33076 MIR214-201ENST00000385214 110 ntBASIC-0.12□□□□□ -2.43
CIITAP33076 RNU6-857P-201ENST00000515893 110 ntBASIC-0.12□□□□□ -2.43
CIITAP33076 MIR3134-201ENST00000579433 74 ntBASIC-0.12□□□□□ -2.43
CIITAP33076 MIR4645-201ENST00000583158 77 ntBASIC-0.12□□□□□ -2.43
CIITAP33076 AC108676.2-201ENST00000605225 163 ntBASIC-0.12□□□□□ -2.43
CIITAP33076 SNORD45.1-201ENST00000363181 77 ntBASIC-0.13□□□□□ -2.43
CIITAP33076 SNORD115-22-201ENST00000364456 82 ntBASIC-0.13□□□□□ -2.43
CIITAP33076 RNU6-455P-201ENST00000384681 107 ntBASIC-0.13□□□□□ -2.43
CIITAP33076 MIRLET7B-201ENST00000385140 83 ntBASIC-0.13□□□□□ -2.43
CIITAP33076 RNU6-604P-201ENST00000390917 100 ntBASIC-0.13□□□□□ -2.43
CIITAP33076 RNU7-55P-201ENST00000459426 62 ntBASIC-0.13□□□□□ -2.43
CIITAP33076 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.14□□□□□ -2.43
CIITAP33076 SNORA72.7-201ENST00000516349 94 ntBASIC-0.14□□□□□ -2.43
CIITAP33076 U6.96-201ENST00000636425 70 ntBASIC-0.14□□□□□ -2.43
CIITAP33076 SNORD49B-201ENST00000365172 72 ntBASIC-0.15□□□□□ -2.43
CIITAP33076 RNU6-900P-201ENST00000384498 102 ntBASIC-0.15□□□□□ -2.43
CIITAP33076 RNU6-881P-201ENST00000516813 102 ntBASIC-0.15□□□□□ -2.43
CIITAP33076 RNU6-645P-201ENST00000364649 106 ntBASIC-0.16□□□□□ -2.44
CIITAP33076 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.16□□□□□ -2.44
CIITAP33076 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.16□□□□□ -2.44
CIITAP33076 RNU6-982P-201ENST00000516216 102 ntBASIC-0.16□□□□□ -2.44
CIITAP33076 MIR3681-201ENST00000580089 72 ntBASIC-0.16□□□□□ -2.44
CIITAP33076 MIR8064-201ENST00000612863 90 ntBASIC-0.16□□□□□ -2.44
CIITAP33076 RNU6-24P-201ENST00000384440 107 ntBASIC-0.17□□□□□ -2.44
CIITAP33076 RNU6-70P-201ENST00000516438 60 ntBASIC-0.17□□□□□ -2.44
CIITAP33076 Y_RNA.685-201ENST00000516532 108 ntBASIC-0.17□□□□□ -2.44
CIITAP33076 CYP3A54P-201ENST00000566950 75 ntBASIC-0.17□□□□□ -2.44
CIITAP33076 SNORA18.1-201ENST00000363418 128 ntBASIC-0.18□□□□□ -2.44
CIITAP33076 SNORD115-23-201ENST00000364461 82 ntBASIC-0.18□□□□□ -2.44
CIITAP33076 RNU6-1275P-201ENST00000391087 107 ntBASIC-0.18□□□□□ -2.44
CIITAP33076 MIR101-1-201ENST00000362265 75 ntBASIC-0.19□□□□□ -2.44
CIITAP33076 SNORD114-28-201ENST00000363610 72 ntBASIC-0.19□□□□□ -2.44
CIITAP33076 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.19□□□□□ -2.44
CIITAP33076 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.19□□□□□ -2.44
CIITAP33076 SNORD56B-201ENST00000384713 71 ntBASIC-0.19□□□□□ -2.44
CIITAP33076 RPS29P8-201ENST00000445109 171 ntBASIC-0.19□□□□□ -2.44
CIITAP33076 AL590491.3-201ENST00000610731 82 ntBASIC-0.19□□□□□ -2.44
CIITAP33076 U7.4-201ENST00000614961 63 ntBASIC-0.19□□□□□ -2.44
CIITAP33076 RNA5SP331-201ENST00000364986 107 ntBASIC-0.2□□□□□ -2.44
CIITAP33076 SNORD114-12-201ENST00000365400 75 ntBASIC-0.2□□□□□ -2.44
CIITAP33076 SNORD45A-201ENST00000384512 84 ntBASIC-0.2□□□□□ -2.44
CIITAP33076 RNU6-523P-201ENST00000516304 54 ntBASIC-0.2□□□□□ -2.44
CIITAP33076 RNU6-687P-201ENST00000516443 89 ntBASIC-0.2□□□□□ -2.44
CIITAP33076 SNORD4A-201ENST00000459174 72 ntBASIC-0.21□□□□□ -2.44
CIITAP33076 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.21□□□□□ -2.44
CIITAP33076 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.21□□□□□ -2.44
CIITAP33076 SNORD113.1-201ENST00000363280 73 ntBASIC-0.22□□□□□ -2.44
CIITAP33076 RNU6-973P-201ENST00000364690 107 ntBASIC-0.22□□□□□ -2.44
CIITAP33076 RNU6-587P-201ENST00000391282 106 ntBASIC-0.22□□□□□ -2.44
CIITAP33076 MIR1255B2-201ENST00000408618 67 ntBASIC-0.22□□□□□ -2.44
CIITAP33076 RNA5SP451-201ENST00000410588 110 ntBASIC-0.22□□□□□ -2.44
CIITAP33076 AC096531.1-201ENST00000419107 107 ntBASIC-0.22□□□□□ -2.44
CIITAP33076 SNORD57-201ENST00000448188 72 ntBASIC-0.22□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 207.6 ms