Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SNORA7.5-201ENST00000410672 110 ntBASIC-2.17□□□□□ -2.76
USF3Q68DE3 RNU7-152P-201ENST00000458982 64 ntBASIC-2.17□□□□□ -2.76
USF3Q68DE3 RNU6-681P-201ENST00000364012 104 ntBASIC-2.17□□□□□ -2.76
USF3Q68DE3 RNU6-1081P-201ENST00000384537 107 ntBASIC-2.17□□□□□ -2.76
USF3Q68DE3 RNU6-310P-201ENST00000384655 107 ntBASIC-2.17□□□□□ -2.76
USF3Q68DE3 SNORD116.3-201ENST00000517176 78 ntBASIC-2.17□□□□□ -2.76
USF3Q68DE3 RNU6-340P-201ENST00000364005 107 ntBASIC-2.18□□□□□ -2.76
USF3Q68DE3 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC-2.18□□□□□ -2.76
USF3Q68DE3 SNORA18.5-201ENST00000516616 101 ntBASIC-2.18□□□□□ -2.76
USF3Q68DE3 RNU6-912P-201ENST00000363800 104 ntBASIC-2.18□□□□□ -2.76
USF3Q68DE3 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.18□□□□□ -2.76
USF3Q68DE3 Y_RNA.797-201ENST00000515977 94 ntBASIC-2.18□□□□□ -2.76
USF3Q68DE3 Y_RNA.645-201ENST00000391229 102 ntBASIC-2.19□□□□□ -2.76
USF3Q68DE3 RNU6-1089P-201ENST00000516473 104 ntBASIC-2.19□□□□□ -2.76
USF3Q68DE3 MIR3121-201ENST00000579680 77 ntBASIC-2.19□□□□□ -2.76
USF3Q68DE3 U4.4-201ENST00000620626 117 ntBASIC-2.19□□□□□ -2.76
USF3Q68DE3 RNU6-326P-201ENST00000365480 107 ntBASIC-2.19□□□□□ -2.76
USF3Q68DE3 SNORD116-2-201ENST00000384274 95 ntBASIC-2.19□□□□□ -2.76
USF3Q68DE3 RNY3P8-201ENST00000411366 126 ntBASIC-2.19□□□□□ -2.76
USF3Q68DE3 RNU7-151P-201ENST00000516930 53 ntBASIC-2.19□□□□□ -2.76
USF3Q68DE3 MIR6844-201ENST00000637122 62 ntBASIC-2.19□□□□□ -2.76
USF3Q68DE3 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.2□□□□□ -2.76
USF3Q68DE3 Y_RNA.198-201ENST00000364013 98 ntBASIC-2.2□□□□□ -2.76
USF3Q68DE3 RNU6-645P-201ENST00000364649 106 ntBASIC-2.2□□□□□ -2.76
USF3Q68DE3 MIR548Z-201ENST00000584743 97 ntBASIC-2.2□□□□□ -2.76
USF3Q68DE3 Y_RNA.187-201ENST00000363918 113 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 Y_RNA.262-201ENST00000364641 102 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-2.21□□□□□ -2.76
USF3Q68DE3 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 AC104996.3-201ENST00000590718 94 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 Y_RNA.74-201ENST00000362911 99 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 Y_RNA.134-201ENST00000363435 105 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 RNU6-1338P-201ENST00000516328 91 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 RNU6-971P-201ENST00000516920 106 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 Y_RNA.718-201ENST00000517110 102 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.21□□□□□ -2.76
USF3Q68DE3 Y_RNA.9-201ENST00000362354 101 ntBASIC-2.22□□□□□ -2.76
USF3Q68DE3 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.22□□□□□ -2.76
USF3Q68DE3 MIR509-1-201ENST00000385265 94 ntBASIC-2.22□□□□□ -2.76
USF3Q68DE3 MIR509-2-201ENST00000390724 91 ntBASIC-2.22□□□□□ -2.76
USF3Q68DE3 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-2.22□□□□□ -2.76
USF3Q68DE3 Y_RNA.84-201ENST00000363011 104 ntBASIC-2.22□□□□□ -2.77
USF3Q68DE3 RNU6-1289P-201ENST00000384431 106 ntBASIC-2.22□□□□□ -2.77
USF3Q68DE3 Y_RNA.573-201ENST00000384763 105 ntBASIC-2.22□□□□□ -2.77
USF3Q68DE3 RNU6-816P-201ENST00000390914 107 ntBASIC-2.22□□□□□ -2.77
USF3Q68DE3 RNU6-1268P-201ENST00000391214 107 ntBASIC-2.22□□□□□ -2.77
USF3Q68DE3 SNORA75.5-201ENST00000391291 81 ntBASIC-2.22□□□□□ -2.77
USF3Q68DE3 RNU6-1239P-201ENST00000391310 107 ntBASIC-2.22□□□□□ -2.77
USF3Q68DE3 RNA5SP106-201ENST00000517274 100 ntBASIC-2.22□□□□□ -2.77
USF3Q68DE3 RNU6-1153P-201ENST00000516760 105 ntBASIC-2.23□□□□□ -2.77
USF3Q68DE3 AL731768.1-201ENST00000603124 139 ntBASIC-2.23□□□□□ -2.77
USF3Q68DE3 Y_RNA.259-201ENST00000364619 101 ntBASIC-2.23□□□□□ -2.77
USF3Q68DE3 SNORD1B-201ENST00000363091 84 ntBASIC-2.24□□□□□ -2.77
USF3Q68DE3 SNORD115-37-201ENST00000363768 82 ntBASIC-2.24□□□□□ -2.77
USF3Q68DE3 Y_RNA.325-201ENST00000365171 122 ntBASIC-2.24□□□□□ -2.77
USF3Q68DE3 Y_RNA.398-201ENST00000383952 99 ntBASIC-2.24□□□□□ -2.77
USF3Q68DE3 RNU6-493P-201ENST00000391321 108 ntBASIC-2.24□□□□□ -2.77
USF3Q68DE3 Y_RNA.606-201ENST00000410579 103 ntBASIC-2.24□□□□□ -2.77
USF3Q68DE3 RNU6-506P-201ENST00000516553 94 ntBASIC-2.24□□□□□ -2.77
USF3Q68DE3 MIR4282-201ENST00000583613 67 ntBASIC-2.24□□□□□ -2.77
USF3Q68DE3 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-2.24□□□□□ -2.77
USF3Q68DE3 U6.81-201ENST00000612550 106 ntBASIC-2.24□□□□□ -2.77
USF3Q68DE3 MIR369-201ENST00000362155 70 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 MTND5P22-201ENST00000458380 195 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 SNORD63.2-201ENST00000516303 64 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 MIR4439-201ENST00000583746 80 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 MTRNR2L9-201ENST00000622562 75 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 Y_RNA.139-201ENST00000363464 102 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 Y_RNA.166-201ENST00000363730 102 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 RNU6-800P-201ENST00000384473 103 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 Y_RNA.554-201ENST00000384672 102 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 MIR1302-11-201ENST00000408051 138 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 MIR1302-9-201ENST00000408365 138 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 MIR1302-10-201ENST00000408734 138 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 Y_RNA.686-201ENST00000516548 134 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 MIR1302-2-201ENST00000607096 138 ntBASIC-2.25□□□□□ -2.77
USF3Q68DE3 Y_RNA.292-201ENST00000364904 97 ntBASIC-2.26□□□□□ -2.77
USF3Q68DE3 RNY3P15-201ENST00000516297 97 ntBASIC-2.26□□□□□ -2.77
USF3Q68DE3 RNU6-698P-201ENST00000363523 107 ntBASIC-2.26□□□□□ -2.77
USF3Q68DE3 RNU6-34P-201ENST00000364874 107 ntBASIC-2.26□□□□□ -2.77
USF3Q68DE3 RNY4P10-201ENST00000365571 96 ntBASIC-2.26□□□□□ -2.77
USF3Q68DE3 RNU6-669P-201ENST00000365575 107 ntBASIC-2.26□□□□□ -2.77
USF3Q68DE3 SNORD60-201ENST00000383903 83 ntBASIC-2.26□□□□□ -2.77
USF3Q68DE3 RNU6-1113P-201ENST00000384348 107 ntBASIC-2.26□□□□□ -2.77
USF3Q68DE3 SNORD45B-201ENST00000364617 72 ntBASIC-2.27□□□□□ -2.77
USF3Q68DE3 Y_RNA.307-201ENST00000365022 117 ntBASIC-2.27□□□□□ -2.77
USF3Q68DE3 RNU6-523P-201ENST00000516304 54 ntBASIC-2.27□□□□□ -2.77
USF3Q68DE3 SNORA40.15-201ENST00000516884 107 ntBASIC-2.27□□□□□ -2.77
USF3Q68DE3 SNORA27.2-201ENST00000363365 126 ntBASIC-2.27□□□□□ -2.77
USF3Q68DE3 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.27□□□□□ -2.77
USF3Q68DE3 Y_RNA.657-201ENST00000515983 102 ntBASIC-2.27□□□□□ -2.77
USF3Q68DE3 RNU6-68P-201ENST00000516576 104 ntBASIC-2.27□□□□□ -2.77
USF3Q68DE3 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-2.27□□□□□ -2.77
USF3Q68DE3 MTND4LP32-201ENST00000636111 270 ntBASIC-2.27□□□□□ -2.77
USF3Q68DE3 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.28□□□□□ -2.77
USF3Q68DE3 RNU6-345P-201ENST00000517001 107 ntBASIC-2.28□□□□□ -2.77
USF3Q68DE3 Y_RNA.109-201ENST00000363215 102 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 SNORD114-13-201ENST00000364377 74 ntBASIC-2.29□□□□□ -2.78
Retrieved 100 of 98,524 protein–RNA pairs in 235.7 ms