Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MTND1P29-201ENST00000448112 647 ntBASIC-1.55□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.686-201ENST00000516548 134 ntBASIC-1.55□□□□□ -2.66
CHD9Q3L8U1 AC090971.5-201ENST00000621102 293 ntBASIC-1.55□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.213-201ENST00000364178 111 ntBASIC-1.55□□□□□ -2.66
CHD9Q3L8U1 RPL35AP4-201ENST00000412007 102 ntBASIC-1.55□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.717-201ENST00000517106 92 ntBASIC-1.55□□□□□ -2.66
CHD9Q3L8U1 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.55□□□□□ -2.66
CHD9Q3L8U1 RNU6-608P-201ENST00000383927 104 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 SNORA24B-201ENST00000384176 131 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 RNU4-14P-201ENST00000410858 122 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 RNU6-1338P-201ENST00000516328 91 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.19-201ENST00000362462 99 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.158-201ENST00000363651 101 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.198-201ENST00000364013 98 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.252-201ENST00000364556 101 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 MIR520D-201ENST00000385002 87 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 RNU6-518P-201ENST00000516056 96 ntBASIC-1.56□□□□□ -2.66
CHD9Q3L8U1 RNU6-824P-201ENST00000363724 104 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 RNY4P13-201ENST00000384284 96 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 MTND5P22-201ENST00000458380 195 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 RNY3P15-201ENST00000516297 97 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.690-201ENST00000516603 95 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 AC005520.4-201ENST00000604337 90 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 RNU6-698P-201ENST00000363523 107 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 RNU6-34P-201ENST00000364874 107 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.645-201ENST00000391229 102 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 RNU6-781P-201ENST00000516377 101 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 MIR3121-201ENST00000579680 77 ntBASIC-1.57□□□□□ -2.66
CHD9Q3L8U1 MTND4LP1-201ENST00000446263 157 ntBASIC-1.58□□□□□ -2.66
CHD9Q3L8U1 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.58□□□□□ -2.66
CHD9Q3L8U1 SNORD37.2-201ENST00000391075 66 ntBASIC-1.58□□□□□ -2.66
CHD9Q3L8U1 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-1.58□□□□□ -2.66
CHD9Q3L8U1 MTND4LP32-201ENST00000636111 270 ntBASIC-1.58□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.527-201ENST00000384573 102 ntBASIC-1.59□□□□□ -2.66
CHD9Q3L8U1 MTND2P23-201ENST00000422990 651 ntBASIC-1.59□□□□□ -2.66
CHD9Q3L8U1 RBMX2P4-201ENST00000441256 376 ntBASIC-1.59□□□□□ -2.66
CHD9Q3L8U1 MIR3688-2-201ENST00000636963 87 ntBASIC-1.59□□□□□ -2.66
CHD9Q3L8U1 RNU6-770P-201ENST00000363929 105 ntBASIC-1.59□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.194-201ENST00000363985 102 ntBASIC-1.59□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.237-201ENST00000364439 102 ntBASIC-1.59□□□□□ -2.66
CHD9Q3L8U1 MIR429-201ENST00000362106 83 ntBASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 MIR23C-201ENST00000579846 100 ntBASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 MIR548Z-201ENST00000584743 97 ntBASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 AC002553.4-201ENST00000616896 331 ntBASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 SNORD113-2-201ENST00000391082 72 ntBASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 MTND1P19-201ENST00000511780 315 ntBASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.701-201ENST00000516812 110 ntBASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 MIR3170-201ENST00000582699 77 ntBASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 U2.7-201ENST00000619197 100 ntBASIC-1.6□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.197-201ENST00000364004 102 ntBASIC-1.61□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.337-201ENST00000365312 102 ntBASIC-1.61□□□□□ -2.67
CHD9Q3L8U1 RNU6-1215P-201ENST00000384441 102 ntBASIC-1.61□□□□□ -2.67
CHD9Q3L8U1 RNU7-121P-201ENST00000516604 62 ntBASIC-1.61□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.61□□□□□ -2.67
CHD9Q3L8U1 RNU6-106P-201ENST00000384405 107 ntBASIC-1.61□□□□□ -2.67
CHD9Q3L8U1 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.61□□□□□ -2.67
CHD9Q3L8U1 MIR4439-201ENST00000583746 80 ntBASIC-1.61□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.279-201ENST00000364763 95 ntBASIC-1.61□□□□□ -2.67
CHD9Q3L8U1 RNU6-995P-201ENST00000391244 107 ntBASIC-1.61□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.276-201ENST00000364732 109 ntBASIC-1.62□□□□□ -2.67
CHD9Q3L8U1 MIR1277-201ENST00000408536 78 ntBASIC-1.62□□□□□ -2.67
CHD9Q3L8U1 RNU6-1153P-201ENST00000516760 105 ntBASIC-1.62□□□□□ -2.67
CHD9Q3L8U1 RNU6-766P-201ENST00000362478 107 ntBASIC-1.62□□□□□ -2.67
CHD9Q3L8U1 MIR548C-201ENST00000384815 97 ntBASIC-1.62□□□□□ -2.67
CHD9Q3L8U1 MIR1302-11-201ENST00000408051 138 ntBASIC-1.62□□□□□ -2.67
CHD9Q3L8U1 MIR1302-9-201ENST00000408365 138 ntBASIC-1.62□□□□□ -2.67
CHD9Q3L8U1 MIR1302-10-201ENST00000408734 138 ntBASIC-1.62□□□□□ -2.67
CHD9Q3L8U1 RNU6-752P-201ENST00000516376 102 ntBASIC-1.62□□□□□ -2.67
CHD9Q3L8U1 MIR1302-2-201ENST00000607096 138 ntBASIC-1.62□□□□□ -2.67
CHD9Q3L8U1 RNU6-645P-201ENST00000364649 106 ntBASIC-1.63□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.797-201ENST00000515977 94 ntBASIC-1.63□□□□□ -2.67
CHD9Q3L8U1 RNU6-861P-201ENST00000516745 106 ntBASIC-1.63□□□□□ -2.67
CHD9Q3L8U1 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.63□□□□□ -2.67
CHD9Q3L8U1 MIR3613-201ENST00000579844 87 ntBASIC-1.63□□□□□ -2.67
CHD9Q3L8U1 SNORD58A-201ENST00000383875 65 ntBASIC-1.64□□□□□ -2.67
CHD9Q3L8U1 MIR630-201ENST00000384957 97 ntBASIC-1.64□□□□□ -2.67
CHD9Q3L8U1 RNU6-460P-201ENST00000391158 108 ntBASIC-1.64□□□□□ -2.67
CHD9Q3L8U1 RNU6-972P-201ENST00000391208 107 ntBASIC-1.64□□□□□ -2.67
CHD9Q3L8U1 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.64□□□□□ -2.67
CHD9Q3L8U1 AC097484.2-201ENST00000509147 251 ntBASIC-1.64□□□□□ -2.67
CHD9Q3L8U1 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.64□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 MIR1252-201ENST00000408861 65 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 AC069439.1-201ENST00000494739 167 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 AC025166.1-201ENST00000612411 163 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 U6.81-201ENST00000612550 106 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 RNU4-11P-201ENST00000365287 132 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 MIR548D2-201ENST00000384955 97 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 MIR548AA1-201ENST00000384971 97 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 RNU7-151P-201ENST00000516930 53 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 AC113195.1-201ENST00000579952 141 ntBASIC-1.65□□□□□ -2.67
CHD9Q3L8U1 MIR3658-201ENST00000636291 56 ntBASIC-1.65□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 177.3 ms