Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MIR582-201ENST00000365731 98 ntBASIC0.66□□□□□ -2.3
MSX2P35548 Y_RNA.443-201ENST00000384135 111 ntBASIC0.66□□□□□ -2.3
MSX2P35548 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
MSX2P35548 MIR4714-201ENST00000580728 77 ntBASIC0.66□□□□□ -2.3
MSX2P35548 AC005520.4-201ENST00000604337 90 ntBASIC0.66□□□□□ -2.3
MSX2P35548 MIR6755-201ENST00000619993 66 ntBASIC0.66□□□□□ -2.3
MSX2P35548 MIR6739-201ENST00000622461 75 ntBASIC0.66□□□□□ -2.3
MSX2P35548 Y_RNA.125-201ENST00000363371 111 ntBASIC0.65□□□□□ -2.31
MSX2P35548 Y_RNA.250-201ENST00000364542 110 ntBASIC0.65□□□□□ -2.31
MSX2P35548 RNU6-645P-201ENST00000364649 106 ntBASIC0.65□□□□□ -2.31
MSX2P35548 RNU6-630P-201ENST00000391258 106 ntBASIC0.65□□□□□ -2.31
MSX2P35548 SNORD71-201ENST00000411292 86 ntBASIC0.65□□□□□ -2.31
MSX2P35548 AC098934.3-201ENST00000430450 190 ntBASIC0.65□□□□□ -2.31
MSX2P35548 MIR548E-201ENST00000408287 88 ntBASIC0.64□□□□□ -2.31
MSX2P35548 RNU6-1232P-201ENST00000516299 86 ntBASIC0.64□□□□□ -2.31
MSX2P35548 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
MSX2P35548 SNORA25.4-201ENST00000363666 124 ntBASIC0.63□□□□□ -2.31
MSX2P35548 SNORA2A-201ENST00000383885 135 ntBASIC0.63□□□□□ -2.31
MSX2P35548 Y_RNA.423-201ENST00000384057 113 ntBASIC0.63□□□□□ -2.31
MSX2P35548 MIR1265-201ENST00000408444 86 ntBASIC0.63□□□□□ -2.31
MSX2P35548 snoU13.13-201ENST00000458842 104 ntBASIC0.63□□□□□ -2.31
MSX2P35548 Y_RNA.633-201ENST00000459107 95 ntBASIC0.63□□□□□ -2.31
MSX2P35548 RNU6-656P-201ENST00000516785 107 ntBASIC0.63□□□□□ -2.31
MSX2P35548 uc_338.10-201ENST00000621872 182 ntBASIC0.63□□□□□ -2.31
MSX2P35548 AC021146.9-201ENST00000512503 156 ntBASIC0.62□□□□□ -2.31
MSX2P35548 RNU6-229P-201ENST00000516614 102 ntBASIC0.62□□□□□ -2.31
MSX2P35548 AL109933.3-201ENST00000619095 188 ntBASIC0.62□□□□□ -2.31
MSX2P35548 MIR6835-201ENST00000621552 64 ntBASIC0.62□□□□□ -2.31
MSX2P35548 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.62□□□□□ -2.31
MSX2P35548 SNORA63.6-201ENST00000364921 119 ntBASIC0.61□□□□□ -2.31
MSX2P35548 RNU6-945P-201ENST00000383947 107 ntBASIC0.61□□□□□ -2.31
MSX2P35548 MTND4LP1-201ENST00000446263 157 ntBASIC0.61□□□□□ -2.31
MSX2P35548 RNU6-848P-201ENST00000515948 107 ntBASIC0.61□□□□□ -2.31
MSX2P35548 RNU6-617P-201ENST00000516147 107 ntBASIC0.61□□□□□ -2.31
MSX2P35548 RNU6-473P-201ENST00000516164 107 ntBASIC0.61□□□□□ -2.31
MSX2P35548 RNU6-1049P-201ENST00000516414 107 ntBASIC0.61□□□□□ -2.31
MSX2P35548 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
MSX2P35548 RNU6-668P-201ENST00000364180 107 ntBASIC0.59□□□□□ -2.31
MSX2P35548 Y_RNA.340-201ENST00000365330 92 ntBASIC0.59□□□□□ -2.31
MSX2P35548 RNU6-471P-201ENST00000383944 106 ntBASIC0.59□□□□□ -2.31
MSX2P35548 MIR521-2-201ENST00000384818 87 ntBASIC0.59□□□□□ -2.31
MSX2P35548 MIR508-201ENST00000384857 115 ntBASIC0.59□□□□□ -2.31
MSX2P35548 MIR193B-201ENST00000384907 83 ntBASIC0.59□□□□□ -2.31
MSX2P35548 MIR501-201ENST00000390204 84 ntBASIC0.59□□□□□ -2.31
MSX2P35548 U7.6-201ENST00000610841 64 ntBASIC0.59□□□□□ -2.31
MSX2P35548 MIR6513-201ENST00000621188 64 ntBASIC0.59□□□□□ -2.31
MSX2P35548 RNU6-1162P-201ENST00000384443 104 ntBASIC0.58□□□□□ -2.32
MSX2P35548 AC125388.1-201ENST00000459631 156 ntBASIC0.58□□□□□ -2.32
MSX2P35548 RNA5SP121-201ENST00000516537 101 ntBASIC0.58□□□□□ -2.32
MSX2P35548 MIR4677-201ENST00000584153 80 ntBASIC0.58□□□□□ -2.32
MSX2P35548 SNORD44.1-201ENST00000363202 61 ntBASIC0.57□□□□□ -2.32
MSX2P35548 Y_RNA.374-201ENST00000365606 101 ntBASIC0.57□□□□□ -2.32
MSX2P35548 SNORA15B-2-201ENST00000384058 135 ntBASIC0.57□□□□□ -2.32
MSX2P35548 SNORA15B-1-201ENST00000384334 135 ntBASIC0.57□□□□□ -2.32
MSX2P35548 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
MSX2P35548 MIR760-201ENST00000390220 80 ntBASIC0.57□□□□□ -2.32
MSX2P35548 MIR936-201ENST00000401264 98 ntBASIC0.57□□□□□ -2.32
MSX2P35548 AC244090.1-201ENST00000441884 93 ntBASIC0.57□□□□□ -2.32
MSX2P35548 AL157398.1-201ENST00000452981 186 ntBASIC0.57□□□□□ -2.32
MSX2P35548 MIR1273G-201ENST00000577677 100 ntBASIC0.57□□□□□ -2.32
MSX2P35548 MIR548AD-201ENST00000584780 82 ntBASIC0.57□□□□□ -2.32
MSX2P35548 MIR20A-201ENST00000362279 71 ntBASIC0.56□□□□□ -2.32
MSX2P35548 SNORD114-23-201ENST00000363536 72 ntBASIC0.56□□□□□ -2.32
MSX2P35548 SNORA33.1-201ENST00000364957 130 ntBASIC0.56□□□□□ -2.32
MSX2P35548 Y_RNA.375-201ENST00000365625 101 ntBASIC0.56□□□□□ -2.32
MSX2P35548 RNU6-863P-201ENST00000515989 104 ntBASIC0.56□□□□□ -2.32
MSX2P35548 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.56□□□□□ -2.32
MSX2P35548 MIR516B1-201ENST00000385211 90 ntBASIC0.55□□□□□ -2.32
MSX2P35548 SNORA68.3-201ENST00000515906 83 ntBASIC0.55□□□□□ -2.32
MSX2P35548 MIR4511-201ENST00000582784 87 ntBASIC0.55□□□□□ -2.32
MSX2P35548 Y_RNA.30-201ENST00000362572 97 ntBASIC0.54□□□□□ -2.32
MSX2P35548 RNA5SP128-201ENST00000365305 116 ntBASIC0.54□□□□□ -2.32
MSX2P35548 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.54□□□□□ -2.32
MSX2P35548 RNU6-1089P-201ENST00000516473 104 ntBASIC0.54□□□□□ -2.32
MSX2P35548 RNU7-188P-201ENST00000517063 64 ntBASIC0.54□□□□□ -2.32
MSX2P35548 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
MSX2P35548 SNORD114-29-201ENST00000364819 70 ntBASIC0.53□□□□□ -2.32
MSX2P35548 RNA5SP347-201ENST00000362445 119 ntBASIC0.52□□□□□ -2.33
MSX2P35548 SNORA49-201ENST00000386157 136 ntBASIC0.52□□□□□ -2.33
MSX2P35548 RNU6-175P-201ENST00000516896 107 ntBASIC0.52□□□□□ -2.33
MSX2P35548 AC103706.3-201ENST00000636297 85 ntBASIC0.52□□□□□ -2.33
MSX2P35548 AC010487.4-201ENST00000637027 61 ntBASIC0.52□□□□□ -2.33
MSX2P35548 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.52□□□□□ -2.33
MSX2P35548 MIR103A1-201ENST00000362165 78 ntBASIC0.51□□□□□ -2.33
MSX2P35548 MIR3925-201ENST00000584674 77 ntBASIC0.51□□□□□ -2.33
MSX2P35548 RNA5SP215-201ENST00000363440 122 ntBASIC0.5□□□□□ -2.33
MSX2P35548 RNU6-542P-201ENST00000516405 103 ntBASIC0.5□□□□□ -2.33
MSX2P35548 U2.7-201ENST00000619197 100 ntBASIC0.5□□□□□ -2.33
MSX2P35548 MIR499B-201ENST00000636498 73 ntBASIC0.5□□□□□ -2.33
MSX2P35548 MIRLET7D-201ENST00000362263 87 ntBASIC0.49□□□□□ -2.33
MSX2P35548 Y_RNA.115-201ENST00000363272 98 ntBASIC0.49□□□□□ -2.33
MSX2P35548 RNA5SP499-201ENST00000363982 119 ntBASIC0.49□□□□□ -2.33
MSX2P35548 RNA5SP299-201ENST00000391203 116 ntBASIC0.49□□□□□ -2.33
MSX2P35548 MIR876-201ENST00000401147 81 ntBASIC0.49□□□□□ -2.33
MSX2P35548 AC084368.1-201ENST00000620935 65 ntBASIC0.49□□□□□ -2.33
MSX2P35548 MIR5087-201ENST00000635826 76 ntBASIC0.49□□□□□ -2.33
MSX2P35548 MIR924-201ENST00000638017 53 ntBASIC0.49□□□□□ -2.33
MSX2P35548 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
MSX2P35548 RNA5SP193-201ENST00000410353 107 ntBASIC0.48□□□□□ -2.33
MSX2P35548 RNU7-129P-201ENST00000516128 62 ntBASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 141.6 ms