Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNU6-321P-201ENST00000410912 106 ntBASIC1.25□□□□□ -2.21
HIF3AQ9Y2N7 SCARNA21.1-201ENST00000515996 128 ntBASIC1.25□□□□□ -2.21
HIF3AQ9Y2N7 RNA5SP227-201ENST00000516184 113 ntBASIC1.25□□□□□ -2.21
HIF3AQ9Y2N7 SNORA8.2-201ENST00000384372 139 ntBASIC1.24□□□□□ -2.21
HIF3AQ9Y2N7 AL157398.1-201ENST00000452981 186 ntBASIC1.24□□□□□ -2.21
HIF3AQ9Y2N7 RNU6-1089P-201ENST00000516473 104 ntBASIC1.24□□□□□ -2.21
HIF3AQ9Y2N7 MIR4473-201ENST00000583731 91 ntBASIC1.24□□□□□ -2.21
HIF3AQ9Y2N7 MIR7974-201ENST00000615835 79 ntBASIC1.24□□□□□ -2.21
HIF3AQ9Y2N7 MIR6739-201ENST00000622461 75 ntBASIC1.24□□□□□ -2.21
HIF3AQ9Y2N7 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.23□□□□□ -2.21
HIF3AQ9Y2N7 MIR758-201ENST00000390227 88 ntBASIC1.23□□□□□ -2.21
HIF3AQ9Y2N7 SNORD99-201ENST00000408612 74 ntBASIC1.23□□□□□ -2.21
HIF3AQ9Y2N7 AC021146.9-201ENST00000512503 156 ntBASIC1.23□□□□□ -2.21
HIF3AQ9Y2N7 MIR466-201ENST00000580653 84 ntBASIC1.23□□□□□ -2.21
HIF3AQ9Y2N7 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.23□□□□□ -2.21
HIF3AQ9Y2N7 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
HIF3AQ9Y2N7 RNU6-614P-201ENST00000384369 107 ntBASIC1.22□□□□□ -2.21
HIF3AQ9Y2N7 RNU7-95P-201ENST00000459222 64 ntBASIC1.22□□□□□ -2.21
HIF3AQ9Y2N7 U6.59-201ENST00000615686 107 ntBASIC1.22□□□□□ -2.21
HIF3AQ9Y2N7 MIR18A-201ENST00000362310 71 ntBASIC1.21□□□□□ -2.22
HIF3AQ9Y2N7 SNORD114-4-201ENST00000363962 75 ntBASIC1.21□□□□□ -2.22
HIF3AQ9Y2N7 AL162376.1-201ENST00000624117 175 ntBASIC1.21□□□□□ -2.22
HIF3AQ9Y2N7 SNORA36.1-201ENST00000363424 132 ntBASIC1.2□□□□□ -2.22
HIF3AQ9Y2N7 RNU6-1162P-201ENST00000384443 104 ntBASIC1.2□□□□□ -2.22
HIF3AQ9Y2N7 SNORA75.1-201ENST00000391130 148 ntBASIC1.2□□□□□ -2.22
HIF3AQ9Y2N7 AC006210.1-201ENST00000424882 111 ntBASIC1.2□□□□□ -2.22
HIF3AQ9Y2N7 AC068338.1-201ENST00000565567 176 ntBASIC1.2□□□□□ -2.22
HIF3AQ9Y2N7 MIR548AE1-201ENST00000583292 70 ntBASIC1.2□□□□□ -2.22
HIF3AQ9Y2N7 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.2□□□□□ -2.22
HIF3AQ9Y2N7 RNA5SP215-201ENST00000363440 122 ntBASIC1.19□□□□□ -2.22
HIF3AQ9Y2N7 RNU6-829P-201ENST00000363700 112 ntBASIC1.19□□□□□ -2.22
HIF3AQ9Y2N7 RNA5SP268-201ENST00000516828 124 ntBASIC1.19□□□□□ -2.22
HIF3AQ9Y2N7 MIR8070-201ENST00000616510 88 ntBASIC1.19□□□□□ -2.22
HIF3AQ9Y2N7 Y_RNA.327-201ENST00000365201 102 ntBASIC1.18□□□□□ -2.22
HIF3AQ9Y2N7 MIR499A-201ENST00000384903 122 ntBASIC1.18□□□□□ -2.22
HIF3AQ9Y2N7 MIR630-201ENST00000384957 97 ntBASIC1.18□□□□□ -2.22
HIF3AQ9Y2N7 MIR652-201ENST00000385278 98 ntBASIC1.18□□□□□ -2.22
HIF3AQ9Y2N7 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.18□□□□□ -2.22
HIF3AQ9Y2N7 MIR6828-201ENST00000636181 60 ntBASIC1.18□□□□□ -2.22
HIF3AQ9Y2N7 Y_RNA.118-201ENST00000363300 101 ntBASIC1.17□□□□□ -2.22
HIF3AQ9Y2N7 RNU6-940P-201ENST00000363433 104 ntBASIC1.17□□□□□ -2.22
HIF3AQ9Y2N7 RNU4-45P-201ENST00000365469 141 ntBASIC1.17□□□□□ -2.22
HIF3AQ9Y2N7 MIR521-2-201ENST00000384818 87 ntBASIC1.17□□□□□ -2.22
HIF3AQ9Y2N7 RNA5SP222-201ENST00000411039 105 ntBASIC1.17□□□□□ -2.22
HIF3AQ9Y2N7 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.17□□□□□ -2.22
HIF3AQ9Y2N7 MIR4752-201ENST00000579672 72 ntBASIC1.17□□□□□ -2.22
HIF3AQ9Y2N7 MIR7107-201ENST00000611489 80 ntBASIC1.17□□□□□ -2.22
HIF3AQ9Y2N7 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.16□□□□□ -2.22
HIF3AQ9Y2N7 SNORA33.1-201ENST00000364957 130 ntBASIC1.16□□□□□ -2.22
HIF3AQ9Y2N7 Y_RNA.407-201ENST00000383986 113 ntBASIC1.16□□□□□ -2.22
HIF3AQ9Y2N7 SNORD110-201ENST00000408189 75 ntBASIC1.16□□□□□ -2.22
HIF3AQ9Y2N7 RNU6-141P-201ENST00000410499 105 ntBASIC1.16□□□□□ -2.22
HIF3AQ9Y2N7 RNA5SP94-201ENST00000516917 108 ntBASIC1.16□□□□□ -2.22
HIF3AQ9Y2N7 MIR3660-201ENST00000584845 100 ntBASIC1.16□□□□□ -2.22
HIF3AQ9Y2N7 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.16□□□□□ -2.22
HIF3AQ9Y2N7 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.22
HIF3AQ9Y2N7 Y_RNA.250-201ENST00000364542 110 ntBASIC1.15□□□□□ -2.23
HIF3AQ9Y2N7 RNU6-302P-201ENST00000365249 107 ntBASIC1.15□□□□□ -2.23
HIF3AQ9Y2N7 MIR582-201ENST00000365731 98 ntBASIC1.15□□□□□ -2.23
HIF3AQ9Y2N7 SCARNA17.3-201ENST00000516381 125 ntBASIC1.15□□□□□ -2.23
HIF3AQ9Y2N7 SNORA70.25-201ENST00000612741 95 ntBASIC1.15□□□□□ -2.23
HIF3AQ9Y2N7 Y_RNA.224-201ENST00000364308 111 ntBASIC1.14□□□□□ -2.23
HIF3AQ9Y2N7 RNY1P8-201ENST00000383970 114 ntBASIC1.14□□□□□ -2.23
HIF3AQ9Y2N7 RNU6-92P-201ENST00000605893 104 ntBASIC1.14□□□□□ -2.23
HIF3AQ9Y2N7 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.14□□□□□ -2.23
HIF3AQ9Y2N7 Y_RNA.236-201ENST00000364427 111 ntBASIC1.13□□□□□ -2.23
HIF3AQ9Y2N7 SNORA63.6-201ENST00000364921 119 ntBASIC1.13□□□□□ -2.23
HIF3AQ9Y2N7 MIR4421-201ENST00000578133 69 ntBASIC1.13□□□□□ -2.23
HIF3AQ9Y2N7 MIR4661-201ENST00000582720 75 ntBASIC1.13□□□□□ -2.23
HIF3AQ9Y2N7 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
HIF3AQ9Y2N7 MIR548E-201ENST00000408287 88 ntBASIC1.12□□□□□ -2.23
HIF3AQ9Y2N7 OR2A41P-201ENST00000473586 105 ntBASIC1.12□□□□□ -2.23
HIF3AQ9Y2N7 MIR7111-201ENST00000619751 72 ntBASIC1.12□□□□□ -2.23
HIF3AQ9Y2N7 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
HIF3AQ9Y2N7 Y_RNA.125-201ENST00000363371 111 ntBASIC1.11□□□□□ -2.23
HIF3AQ9Y2N7 AL353765.1-201ENST00000605514 183 ntBASIC1.11□□□□□ -2.23
HIF3AQ9Y2N7 U2.7-201ENST00000619197 100 ntBASIC1.11□□□□□ -2.23
HIF3AQ9Y2N7 SNORD60.1-201ENST00000362451 73 ntBASIC1.1□□□□□ -2.23
HIF3AQ9Y2N7 MIR517B-201ENST00000385102 67 ntBASIC1.1□□□□□ -2.23
HIF3AQ9Y2N7 RNU6-122P-201ENST00000516818 107 ntBASIC1.1□□□□□ -2.23
HIF3AQ9Y2N7 MIR6078-201ENST00000611069 100 ntBASIC1.1□□□□□ -2.23
HIF3AQ9Y2N7 AL353770.2-201ENST00000620024 78 ntBASIC1.1□□□□□ -2.23
HIF3AQ9Y2N7 RNU6-446P-201ENST00000362827 106 ntBASIC1.09□□□□□ -2.23
HIF3AQ9Y2N7 SNORA36.2-201ENST00000384004 127 ntBASIC1.09□□□□□ -2.23
HIF3AQ9Y2N7 RNU6-392P-201ENST00000364926 101 ntBASIC1.08□□□□□ -2.24
HIF3AQ9Y2N7 SNORA15B-2-201ENST00000384058 135 ntBASIC1.08□□□□□ -2.24
HIF3AQ9Y2N7 SNORA15B-1-201ENST00000384334 135 ntBASIC1.08□□□□□ -2.24
HIF3AQ9Y2N7 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.08□□□□□ -2.24
HIF3AQ9Y2N7 Y_RNA.633-201ENST00000459107 95 ntBASIC1.08□□□□□ -2.24
HIF3AQ9Y2N7 RNU7-174P-201ENST00000516248 59 ntBASIC1.08□□□□□ -2.24
HIF3AQ9Y2N7 uc_338.10-201ENST00000621872 182 ntBASIC1.08□□□□□ -2.24
HIF3AQ9Y2N7 Y_RNA.355-201ENST00000365462 98 ntBASIC1.07□□□□□ -2.24
HIF3AQ9Y2N7 MIR3938-201ENST00000582157 103 ntBASIC1.07□□□□□ -2.24
HIF3AQ9Y2N7 U4.4-201ENST00000620626 117 ntBASIC1.07□□□□□ -2.24
HIF3AQ9Y2N7 SNORD113-2-201ENST00000391082 72 ntBASIC1.06□□□□□ -2.24
HIF3AQ9Y2N7 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.06□□□□□ -2.24
HIF3AQ9Y2N7 SNORA25.18-201ENST00000607153 114 ntBASIC1.06□□□□□ -2.24
HIF3AQ9Y2N7 RNU6-698P-201ENST00000363523 107 ntBASIC1.05□□□□□ -2.24
HIF3AQ9Y2N7 RNU6-34P-201ENST00000364874 107 ntBASIC1.05□□□□□ -2.24
HIF3AQ9Y2N7 AC069271.1-201ENST00000445577 156 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 191.7 ms