Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 Y_RNA.68-201ENST00000362881 102 ntBASIC0.28□□□□□ -2.36
SOX2P48431 MIR501-201ENST00000390204 84 ntBASIC0.28□□□□□ -2.36
SOX2P48431 AC108740.1-201ENST00000498629 225 ntBASIC0.28□□□□□ -2.36
SOX2P48431 MIR499B-201ENST00000636498 73 ntBASIC0.28□□□□□ -2.36
SOX2P48431 Y_RNA.407-201ENST00000383986 113 ntBASIC0.27□□□□□ -2.37
SOX2P48431 SNORA24B-201ENST00000384176 131 ntBASIC0.27□□□□□ -2.37
SOX2P48431 MIR548AD-201ENST00000584780 82 ntBASIC0.27□□□□□ -2.37
SOX2P48431 uc_338.10-201ENST00000621872 182 ntBASIC0.27□□□□□ -2.37
SOX2P48431 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.27□□□□□ -2.37
SOX2P48431 RNU6-54P-201ENST00000365563 107 ntBASIC0.26□□□□□ -2.37
SOX2P48431 Y_RNA.437-201ENST00000384113 113 ntBASIC0.26□□□□□ -2.37
SOX2P48431 RNU6-1177P-201ENST00000391058 104 ntBASIC0.26□□□□□ -2.37
SOX2P48431 RNA5SP193-201ENST00000410353 107 ntBASIC0.26□□□□□ -2.37
SOX2P48431 Y_RNA.681-201ENST00000516445 113 ntBASIC0.26□□□□□ -2.37
SOX2P48431 MIR4677-201ENST00000584153 80 ntBASIC0.26□□□□□ -2.37
SOX2P48431 AC006160.2-201ENST00000637708 154 ntBASIC0.26□□□□□ -2.37
SOX2P48431 MIR494-201ENST00000349529 81 ntBASIC0.25□□□□□ -2.37
SOX2P48431 Y_RNA.73-201ENST00000362910 113 ntBASIC0.25□□□□□ -2.37
SOX2P48431 Y_RNA.426-201ENST00000384068 113 ntBASIC0.25□□□□□ -2.37
SOX2P48431 AC140658.3-201ENST00000567603 271 ntBASIC0.25□□□□□ -2.37
SOX2P48431 MIR4315-1-201ENST00000636800 73 ntBASIC0.25□□□□□ -2.37
SOX2P48431 MIR4315-2-201ENST00000640925 73 ntBASIC0.25□□□□□ -2.37
SOX2P48431 Y_RNA.258-201ENST00000364613 105 ntBASIC0.24□□□□□ -2.37
SOX2P48431 RNU6-652P-201ENST00000365488 107 ntBASIC0.24□□□□□ -2.37
SOX2P48431 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.24□□□□□ -2.37
SOX2P48431 RNU6-127P-201ENST00000390897 107 ntBASIC0.24□□□□□ -2.37
SOX2P48431 MIR1197-201ENST00000408818 88 ntBASIC0.24□□□□□ -2.37
SOX2P48431 AL450471.1-201ENST00000447509 127 ntBASIC0.24□□□□□ -2.37
SOX2P48431 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.24□□□□□ -2.37
SOX2P48431 RNU6-820P-201ENST00000384273 107 ntBASIC0.23□□□□□ -2.37
SOX2P48431 MIR516B1-201ENST00000385211 90 ntBASIC0.23□□□□□ -2.37
SOX2P48431 RNA5SP63-201ENST00000391225 112 ntBASIC0.23□□□□□ -2.37
SOX2P48431 snoU13.17-201ENST00000458802 104 ntBASIC0.23□□□□□ -2.37
SOX2P48431 AC097510.1-201ENST00000510945 133 ntBASIC0.23□□□□□ -2.37
SOX2P48431 MIR5588-201ENST00000581890 63 ntBASIC0.23□□□□□ -2.37
SOX2P48431 AC023932.2-201ENST00000603176 175 ntBASIC0.23□□□□□ -2.37
SOX2P48431 RNU6-208P-201ENST00000362431 107 ntBASIC0.22□□□□□ -2.37
SOX2P48431 Y_RNA.178-201ENST00000363832 102 ntBASIC0.22□□□□□ -2.37
SOX2P48431 SNORD114-4-201ENST00000363962 75 ntBASIC0.22□□□□□ -2.37
SOX2P48431 SNORD77.2-201ENST00000391045 68 ntBASIC0.22□□□□□ -2.37
SOX2P48431 AC022137.1-201ENST00000483735 151 ntBASIC0.22□□□□□ -2.37
SOX2P48431 MIR4514-201ENST00000581410 57 ntBASIC0.22□□□□□ -2.37
SOX2P48431 MIR548AE1-201ENST00000583292 70 ntBASIC0.22□□□□□ -2.37
SOX2P48431 AC084368.1-201ENST00000620935 65 ntBASIC0.22□□□□□ -2.37
SOX2P48431 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
SOX2P48431 RNU6-624P-201ENST00000363411 107 ntBASIC0.21□□□□□ -2.38
SOX2P48431 Y_RNA.264-201ENST00000364665 102 ntBASIC0.21□□□□□ -2.38
SOX2P48431 RNU6-979P-201ENST00000383896 107 ntBASIC0.21□□□□□ -2.38
SOX2P48431 RNU6-242P-201ENST00000384359 107 ntBASIC0.21□□□□□ -2.38
SOX2P48431 Y_RNA.607-201ENST00000410597 98 ntBASIC0.21□□□□□ -2.38
SOX2P48431 RNU6-782P-201ENST00000516852 104 ntBASIC0.21□□□□□ -2.38
SOX2P48431 RNU6-762P-201ENST00000517107 102 ntBASIC0.21□□□□□ -2.38
SOX2P48431 RNU6-495P-201ENST00000362995 107 ntBASIC0.2□□□□□ -2.38
SOX2P48431 SNORD73B-201ENST00000364394 72 ntBASIC0.2□□□□□ -2.38
SOX2P48431 Y_RNA.433-201ENST00000384089 102 ntBASIC0.2□□□□□ -2.38
SOX2P48431 RNU6-154P-201ENST00000384306 106 ntBASIC0.2□□□□□ -2.38
SOX2P48431 MIR643-201ENST00000385267 97 ntBASIC0.2□□□□□ -2.38
SOX2P48431 SNORD75.2-201ENST00000408784 58 ntBASIC0.2□□□□□ -2.38
SOX2P48431 Y_RNA.660-201ENST00000516002 120 ntBASIC0.2□□□□□ -2.38
SOX2P48431 RNU6-161P-201ENST00000363051 106 ntBASIC0.19□□□□□ -2.38
SOX2P48431 SNORA75.1-201ENST00000391130 148 ntBASIC0.19□□□□□ -2.38
SOX2P48431 RNU6-592P-201ENST00000411333 103 ntBASIC0.19□□□□□ -2.38
SOX2P48431 RNU7-24P-201ENST00000458867 62 ntBASIC0.19□□□□□ -2.38
SOX2P48431 RNU6-1108P-201ENST00000516308 104 ntBASIC0.19□□□□□ -2.38
SOX2P48431 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.19□□□□□ -2.38
SOX2P48431 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
SOX2P48431 MIR3925-201ENST00000584674 77 ntBASIC0.19□□□□□ -2.38
SOX2P48431 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.19□□□□□ -2.38
SOX2P48431 RNU6-824P-201ENST00000363724 104 ntBASIC0.18□□□□□ -2.38
SOX2P48431 SNORD114-29-201ENST00000364819 70 ntBASIC0.18□□□□□ -2.38
SOX2P48431 MIR652-201ENST00000385278 98 ntBASIC0.18□□□□□ -2.38
SOX2P48431 SNORD42B-201ENST00000458893 67 ntBASIC0.18□□□□□ -2.38
SOX2P48431 AC062037.1-201ENST00000605302 128 ntBASIC0.18□□□□□ -2.38
SOX2P48431 MIR4773-1-201ENST00000637203 78 ntBASIC0.18□□□□□ -2.38
SOX2P48431 RNU6-382P-201ENST00000365181 106 ntBASIC0.17□□□□□ -2.38
SOX2P48431 MIR610-201ENST00000385139 96 ntBASIC0.17□□□□□ -2.38
SOX2P48431 MIR892B-201ENST00000401279 77 ntBASIC0.17□□□□□ -2.38
SOX2P48431 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.17□□□□□ -2.38
SOX2P48431 RNU7-171P-201ENST00000459581 62 ntBASIC0.17□□□□□ -2.38
SOX2P48431 SCARNA17.3-201ENST00000516381 125 ntBASIC0.17□□□□□ -2.38
SOX2P48431 RNU6-557P-201ENST00000516842 110 ntBASIC0.17□□□□□ -2.38
SOX2P48431 SCARNA11.2-201ENST00000517183 154 ntBASIC0.17□□□□□ -2.38
SOX2P48431 U6.81-201ENST00000612550 106 ntBASIC0.17□□□□□ -2.38
SOX2P48431 SNORA42.1-201ENST00000363515 137 ntBASIC0.16□□□□□ -2.38
SOX2P48431 RNU6-129P-201ENST00000391022 107 ntBASIC0.16□□□□□ -2.38
SOX2P48431 MIR876-201ENST00000401147 81 ntBASIC0.16□□□□□ -2.38
SOX2P48431 RNU6-274P-201ENST00000459566 107 ntBASIC0.16□□□□□ -2.38
SOX2P48431 RNA5SP395-201ENST00000516567 118 ntBASIC0.16□□□□□ -2.38
SOX2P48431 RNA5SP285-201ENST00000516619 119 ntBASIC0.16□□□□□ -2.38
SOX2P48431 RNU7-188P-201ENST00000517063 64 ntBASIC0.16□□□□□ -2.38
SOX2P48431 MIR20A-201ENST00000362279 71 ntBASIC0.15□□□□□ -2.39
SOX2P48431 RNU6-681P-201ENST00000364012 104 ntBASIC0.15□□□□□ -2.39
SOX2P48431 RNU6-1276P-201ENST00000365372 104 ntBASIC0.15□□□□□ -2.39
SOX2P48431 Y_RNA.371-201ENST00000365591 113 ntBASIC0.15□□□□□ -2.39
SOX2P48431 SNORA26.2-201ENST00000390922 122 ntBASIC0.15□□□□□ -2.39
SOX2P48431 Y_RNA.606-201ENST00000410579 103 ntBASIC0.15□□□□□ -2.39
SOX2P48431 YWHAEP3-201ENST00000582767 121 ntBASIC0.15□□□□□ -2.39
SOX2P48431 AC104408.1-201ENST00000605241 170 ntBASIC0.15□□□□□ -2.39
SOX2P48431 Y_RNA.12-201ENST00000362393 112 ntBASIC0.14□□□□□ -2.39
SOX2P48431 RNA5SP214-201ENST00000363378 118 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 274.7 ms