Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNU7-129P-201ENST00000516128 62 ntBASIC0.45□□□□□ -2.34
CBX4O00257 MIR4514-201ENST00000581410 57 ntBASIC0.45□□□□□ -2.34
CBX4O00257 AC006160.2-201ENST00000637708 154 ntBASIC0.45□□□□□ -2.34
CBX4O00257 Y_RNA.426-201ENST00000384068 113 ntBASIC0.44□□□□□ -2.34
CBX4O00257 RNU6V-201ENST00000384105 107 ntBASIC0.44□□□□□ -2.34
CBX4O00257 RNU6-820P-201ENST00000384273 107 ntBASIC0.44□□□□□ -2.34
CBX4O00257 SNORA9.1-201ENST00000362412 131 ntBASIC0.43□□□□□ -2.34
CBX4O00257 Y_RNA.73-201ENST00000362910 113 ntBASIC0.43□□□□□ -2.34
CBX4O00257 RNA5SP128-201ENST00000365305 116 ntBASIC0.43□□□□□ -2.34
CBX4O00257 VTRNA1-3-201ENST00000365645 89 ntBASIC0.43□□□□□ -2.34
CBX4O00257 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.43□□□□□ -2.34
CBX4O00257 RNU6-1327P-201ENST00000365302 105 ntBASIC0.42□□□□□ -2.34
CBX4O00257 SNORA50A-201ENST00000384225 134 ntBASIC0.42□□□□□ -2.34
CBX4O00257 RNU6-242P-201ENST00000384359 107 ntBASIC0.42□□□□□ -2.34
CBX4O00257 SNORD90-201ENST00000391145 111 ntBASIC0.42□□□□□ -2.34
CBX4O00257 RNA5SP63-201ENST00000391225 112 ntBASIC0.42□□□□□ -2.34
CBX4O00257 RNU5B-6P-201ENST00000516765 68 ntBASIC0.42□□□□□ -2.34
CBX4O00257 MIR5588-201ENST00000581890 63 ntBASIC0.42□□□□□ -2.34
CBX4O00257 AL450471.1-201ENST00000447509 127 ntBASIC0.41□□□□□ -2.34
CBX4O00257 AC022137.1-201ENST00000483735 151 ntBASIC0.41□□□□□ -2.34
CBX4O00257 RNU6-762P-201ENST00000517107 102 ntBASIC0.41□□□□□ -2.34
CBX4O00257 AC140658.3-201ENST00000567603 271 ntBASIC0.41□□□□□ -2.34
CBX4O00257 MIR4473-201ENST00000583731 91 ntBASIC0.41□□□□□ -2.34
CBX4O00257 Y_RNA.125-201ENST00000363371 111 ntBASIC0.4□□□□□ -2.35
CBX4O00257 SNORD73B-201ENST00000364394 72 ntBASIC0.4□□□□□ -2.35
CBX4O00257 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.4□□□□□ -2.35
CBX4O00257 RNU6-1177P-201ENST00000391058 104 ntBASIC0.4□□□□□ -2.35
CBX4O00257 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.4□□□□□ -2.35
CBX4O00257 Y_RNA.407-201ENST00000383986 113 ntBASIC0.39□□□□□ -2.35
CBX4O00257 SNORA24B-201ENST00000384176 131 ntBASIC0.39□□□□□ -2.35
CBX4O00257 MIR1265-201ENST00000408444 86 ntBASIC0.39□□□□□ -2.35
CBX4O00257 HMGN2P22-201ENST00000427588 175 ntBASIC0.39□□□□□ -2.35
CBX4O00257 uc_338.10-201ENST00000621872 182 ntBASIC0.39□□□□□ -2.35
CBX4O00257 RNU6-54P-201ENST00000365563 107 ntBASIC0.38□□□□□ -2.35
CBX4O00257 Y_RNA.437-201ENST00000384113 113 ntBASIC0.38□□□□□ -2.35
CBX4O00257 Y_RNA.607-201ENST00000410597 98 ntBASIC0.38□□□□□ -2.35
CBX4O00257 AC097510.1-201ENST00000510945 133 ntBASIC0.38□□□□□ -2.35
CBX4O00257 Y_RNA.660-201ENST00000516002 120 ntBASIC0.38□□□□□ -2.35
CBX4O00257 RNU6-1232P-201ENST00000516299 86 ntBASIC0.38□□□□□ -2.35
CBX4O00257 RNU6-208P-201ENST00000362431 107 ntBASIC0.37□□□□□ -2.35
CBX4O00257 Y_RNA.264-201ENST00000364665 102 ntBASIC0.37□□□□□ -2.35
CBX4O00257 RNU6-979P-201ENST00000383896 107 ntBASIC0.37□□□□□ -2.35
CBX4O00257 RNU6-815P-201ENST00000384080 113 ntBASIC0.37□□□□□ -2.35
CBX4O00257 MIR501-201ENST00000390204 84 ntBASIC0.37□□□□□ -2.35
CBX4O00257 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
CBX4O00257 SNORD77.2-201ENST00000391045 68 ntBASIC0.37□□□□□ -2.35
CBX4O00257 AC069113.3-201ENST00000521019 150 ntBASIC0.37□□□□□ -2.35
CBX4O00257 AC023932.2-201ENST00000603176 175 ntBASIC0.37□□□□□ -2.35
CBX4O00257 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
CBX4O00257 SNORD114-4-201ENST00000363962 75 ntBASIC0.36□□□□□ -2.35
CBX4O00257 RNA5SP134-201ENST00000516492 96 ntBASIC0.36□□□□□ -2.35
CBX4O00257 AC062037.1-201ENST00000605302 128 ntBASIC0.36□□□□□ -2.35
CBX4O00257 MIR499B-201ENST00000636498 73 ntBASIC0.36□□□□□ -2.35
CBX4O00257 RNU6-624P-201ENST00000363411 107 ntBASIC0.35□□□□□ -2.35
CBX4O00257 SNORA26.2-201ENST00000390922 122 ntBASIC0.35□□□□□ -2.35
CBX4O00257 snoU13.17-201ENST00000458802 104 ntBASIC0.35□□□□□ -2.35
CBX4O00257 MIR548AD-201ENST00000584780 82 ntBASIC0.35□□□□□ -2.35
CBX4O00257 MIR329-2-201ENST00000385029 84 ntBASIC0.34□□□□□ -2.36
CBX4O00257 RNU7-171P-201ENST00000459581 62 ntBASIC0.34□□□□□ -2.36
CBX4O00257 AC108740.1-201ENST00000498629 225 ntBASIC0.34□□□□□ -2.36
CBX4O00257 MIR4677-201ENST00000584153 80 ntBASIC0.34□□□□□ -2.36
CBX4O00257 AL627230.5-201ENST00000619807 58 ntBASIC0.34□□□□□ -2.36
CBX4O00257 RNU6-161P-201ENST00000363051 106 ntBASIC0.33□□□□□ -2.36
CBX4O00257 RNU6-1276P-201ENST00000365372 104 ntBASIC0.33□□□□□ -2.36
CBX4O00257 RNU6-652P-201ENST00000365488 107 ntBASIC0.33□□□□□ -2.36
CBX4O00257 RNU6-129P-201ENST00000391022 107 ntBASIC0.33□□□□□ -2.36
CBX4O00257 MIR1302-4-201ENST00000408701 150 ntBASIC0.33□□□□□ -2.36
CBX4O00257 RNU6-1108P-201ENST00000516308 104 ntBASIC0.33□□□□□ -2.36
CBX4O00257 MIR4315-1-201ENST00000636800 73 ntBASIC0.33□□□□□ -2.36
CBX4O00257 MIR4315-2-201ENST00000640925 73 ntBASIC0.33□□□□□ -2.36
CBX4O00257 MIR516B1-201ENST00000385211 90 ntBASIC0.32□□□□□ -2.36
CBX4O00257 SNORD75.2-201ENST00000408784 58 ntBASIC0.32□□□□□ -2.36
CBX4O00257 RNU6-557P-201ENST00000516842 110 ntBASIC0.32□□□□□ -2.36
CBX4O00257 MIR4636-201ENST00000582271 80 ntBASIC0.32□□□□□ -2.36
CBX4O00257 MIR6759-201ENST00000638110 65 ntBASIC0.32□□□□□ -2.36
CBX4O00257 RNU6-495P-201ENST00000362995 107 ntBASIC0.31□□□□□ -2.36
CBX4O00257 RNU6-154P-201ENST00000384306 106 ntBASIC0.31□□□□□ -2.36
CBX4O00257 RNY4P29-201ENST00000410801 97 ntBASIC0.31□□□□□ -2.36
CBX4O00257 RNU6-592P-201ENST00000411333 103 ntBASIC0.31□□□□□ -2.36
CBX4O00257 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.31□□□□□ -2.36
CBX4O00257 MIR548AE1-201ENST00000583292 70 ntBASIC0.31□□□□□ -2.36
CBX4O00257 AC084368.1-201ENST00000620935 65 ntBASIC0.31□□□□□ -2.36
CBX4O00257 MIR4679-1-201ENST00000637619 75 ntBASIC0.31□□□□□ -2.36
CBX4O00257 RNU6-127P-201ENST00000390897 107 ntBASIC0.3□□□□□ -2.36
CBX4O00257 RNU7-24P-201ENST00000458867 62 ntBASIC0.3□□□□□ -2.36
CBX4O00257 MIR6718-201ENST00000616153 80 ntBASIC0.3□□□□□ -2.36
CBX4O00257 MIR4773-1-201ENST00000637203 78 ntBASIC0.3□□□□□ -2.36
CBX4O00257 RNU6-681P-201ENST00000364012 104 ntBASIC0.29□□□□□ -2.36
CBX4O00257 RNU6-380P-201ENST00000410207 107 ntBASIC0.29□□□□□ -2.36
CBX4O00257 RNU6-274P-201ENST00000459566 107 ntBASIC0.29□□□□□ -2.36
CBX4O00257 U6.81-201ENST00000612550 106 ntBASIC0.29□□□□□ -2.36
CBX4O00257 RNU6-824P-201ENST00000363724 104 ntBASIC0.28□□□□□ -2.36
CBX4O00257 RNU6-686P-201ENST00000364839 107 ntBASIC0.28□□□□□ -2.36
CBX4O00257 Y_RNA.371-201ENST00000365591 113 ntBASIC0.28□□□□□ -2.36
CBX4O00257 SNORA75.1-201ENST00000391130 148 ntBASIC0.28□□□□□ -2.36
CBX4O00257 RNU6-782P-201ENST00000516852 104 ntBASIC0.28□□□□□ -2.36
CBX4O00257 YWHAEP3-201ENST00000582767 121 ntBASIC0.28□□□□□ -2.36
CBX4O00257 Y_RNA.12-201ENST00000362393 112 ntBASIC0.27□□□□□ -2.37
CBX4O00257 SNORD114-29-201ENST00000364819 70 ntBASIC0.27□□□□□ -2.37
CBX4O00257 RNU6-382P-201ENST00000365181 106 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 172.7 ms