Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SNORD115-37-201ENST00000363768 82 ntBASIC0.66□□□□□ -2.3
PCIF1Q9H4Z3 RNA5SP484-201ENST00000458857 111 ntBASIC0.66□□□□□ -2.3
PCIF1Q9H4Z3 AC022137.1-201ENST00000483735 151 ntBASIC0.66□□□□□ -2.3
PCIF1Q9H4Z3 AC018659.1-201ENST00000551083 169 ntBASIC0.66□□□□□ -2.3
PCIF1Q9H4Z3 MIR5588-201ENST00000581890 63 ntBASIC0.66□□□□□ -2.3
PCIF1Q9H4Z3 MIR6513-201ENST00000621188 64 ntBASIC0.66□□□□□ -2.3
PCIF1Q9H4Z3 RNU6-1051P-201ENST00000365471 102 ntBASIC0.65□□□□□ -2.31
PCIF1Q9H4Z3 AC098934.3-201ENST00000430450 190 ntBASIC0.65□□□□□ -2.31
PCIF1Q9H4Z3 AC093423.1-201ENST00000440817 142 ntBASIC0.65□□□□□ -2.31
PCIF1Q9H4Z3 FGF7P7-201ENST00000514120 227 ntBASIC0.65□□□□□ -2.31
PCIF1Q9H4Z3 RNA5SP436-201ENST00000516020 115 ntBASIC0.65□□□□□ -2.31
PCIF1Q9H4Z3 RNU1-29P-201ENST00000606574 126 ntBASIC0.65□□□□□ -2.31
PCIF1Q9H4Z3 AC006160.2-201ENST00000637708 154 ntBASIC0.65□□□□□ -2.31
PCIF1Q9H4Z3 AC093729.1-201ENST00000513074 128 ntBASIC0.64□□□□□ -2.31
PCIF1Q9H4Z3 MIR3140-201ENST00000583685 90 ntBASIC0.64□□□□□ -2.31
PCIF1Q9H4Z3 SNORA63.2-201ENST00000362603 126 ntBASIC0.63□□□□□ -2.31
PCIF1Q9H4Z3 RNU1-141P-201ENST00000364623 158 ntBASIC0.63□□□□□ -2.31
PCIF1Q9H4Z3 RNU6-979P-201ENST00000383896 107 ntBASIC0.63□□□□□ -2.31
PCIF1Q9H4Z3 RNU6-820P-201ENST00000384273 107 ntBASIC0.63□□□□□ -2.31
PCIF1Q9H4Z3 SNORA68.3-201ENST00000515906 83 ntBASIC0.63□□□□□ -2.31
PCIF1Q9H4Z3 SNORA25.13-201ENST00000516395 103 ntBASIC0.63□□□□□ -2.31
PCIF1Q9H4Z3 RN7SL793P-201ENST00000583259 296 ntBASIC0.63□□□□□ -2.31
PCIF1Q9H4Z3 SNORA70.25-201ENST00000612741 95 ntBASIC0.63□□□□□ -2.31
PCIF1Q9H4Z3 AC073869.9-201ENST00000641610 120 ntBASIC0.63□□□□□ -2.31
PCIF1Q9H4Z3 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
PCIF1Q9H4Z3 RNA5SP499-201ENST00000363982 119 ntBASIC0.62□□□□□ -2.31
PCIF1Q9H4Z3 MIR216A-201ENST00000385063 110 ntBASIC0.62□□□□□ -2.31
PCIF1Q9H4Z3 MIR92A1-201ENST00000385233 78 ntBASIC0.62□□□□□ -2.31
PCIF1Q9H4Z3 RNY4P29-201ENST00000410801 97 ntBASIC0.62□□□□□ -2.31
PCIF1Q9H4Z3 RNU6-1052P-201ENST00000411398 104 ntBASIC0.62□□□□□ -2.31
PCIF1Q9H4Z3 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.62□□□□□ -2.31
PCIF1Q9H4Z3 RNA5SP121-201ENST00000516537 101 ntBASIC0.62□□□□□ -2.31
PCIF1Q9H4Z3 RNU6-719P-201ENST00000516671 104 ntBASIC0.62□□□□□ -2.31
PCIF1Q9H4Z3 NAMPTP3-201ENST00000569273 224 ntBASIC0.62□□□□□ -2.31
PCIF1Q9H4Z3 RNA5SP347-201ENST00000362445 119 ntBASIC0.61□□□□□ -2.31
PCIF1Q9H4Z3 SNORA26.2-201ENST00000390922 122 ntBASIC0.61□□□□□ -2.31
PCIF1Q9H4Z3 AC140658.3-201ENST00000567603 271 ntBASIC0.61□□□□□ -2.31
PCIF1Q9H4Z3 MIR6779-201ENST00000617283 64 ntBASIC0.61□□□□□ -2.31
PCIF1Q9H4Z3 Y_RNA.388-201ENST00000383919 113 ntBASIC0.6□□□□□ -2.31
PCIF1Q9H4Z3 U3.27-201ENST00000391237 200 ntBASIC0.6□□□□□ -2.31
PCIF1Q9H4Z3 MIR1302-4-201ENST00000408701 150 ntBASIC0.6□□□□□ -2.31
PCIF1Q9H4Z3 RNU2-59P-201ENST00000410482 191 ntBASIC0.6□□□□□ -2.31
PCIF1Q9H4Z3 Y_RNA.426-201ENST00000384068 113 ntBASIC0.59□□□□□ -2.31
PCIF1Q9H4Z3 SNORA24B-201ENST00000384176 131 ntBASIC0.59□□□□□ -2.31
PCIF1Q9H4Z3 MIR216B-201ENST00000390186 82 ntBASIC0.59□□□□□ -2.31
PCIF1Q9H4Z3 AC006210.1-201ENST00000424882 111 ntBASIC0.59□□□□□ -2.31
PCIF1Q9H4Z3 MIR4460-201ENST00000577862 86 ntBASIC0.59□□□□□ -2.31
PCIF1Q9H4Z3 MIR6755-201ENST00000619993 66 ntBASIC0.59□□□□□ -2.31
PCIF1Q9H4Z3 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
PCIF1Q9H4Z3 RNU5F-1-201ENST00000362507 117 ntBASIC0.58□□□□□ -2.32
PCIF1Q9H4Z3 Y_RNA.423-201ENST00000384057 113 ntBASIC0.58□□□□□ -2.32
PCIF1Q9H4Z3 MIR936-201ENST00000401264 98 ntBASIC0.58□□□□□ -2.32
PCIF1Q9H4Z3 RNU6-592P-201ENST00000411333 103 ntBASIC0.58□□□□□ -2.32
PCIF1Q9H4Z3 MIR548O2-201ENST00000616090 70 ntBASIC0.58□□□□□ -2.32
PCIF1Q9H4Z3 SNORD44.1-201ENST00000363202 61 ntBASIC0.57□□□□□ -2.32
PCIF1Q9H4Z3 RNY4P3-201ENST00000365254 95 ntBASIC0.57□□□□□ -2.32
PCIF1Q9H4Z3 RNU6-1152P-201ENST00000384576 107 ntBASIC0.57□□□□□ -2.32
PCIF1Q9H4Z3 MT-TY-201ENST00000387409 66 ntBASIC0.57□□□□□ -2.32
PCIF1Q9H4Z3 AL157398.1-201ENST00000452981 186 ntBASIC0.57□□□□□ -2.32
PCIF1Q9H4Z3 RNU7-171P-201ENST00000459581 62 ntBASIC0.57□□□□□ -2.32
PCIF1Q9H4Z3 RNU6-229P-201ENST00000516614 102 ntBASIC0.57□□□□□ -2.32
PCIF1Q9H4Z3 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.56□□□□□ -2.32
PCIF1Q9H4Z3 MIRLET7D-201ENST00000362263 87 ntBASIC0.56□□□□□ -2.32
PCIF1Q9H4Z3 RNU6-1276P-201ENST00000365372 104 ntBASIC0.56□□□□□ -2.32
PCIF1Q9H4Z3 RNU6-242P-201ENST00000384359 107 ntBASIC0.56□□□□□ -2.32
PCIF1Q9H4Z3 SNORD110-201ENST00000408189 75 ntBASIC0.56□□□□□ -2.32
PCIF1Q9H4Z3 Y_RNA.607-201ENST00000410597 98 ntBASIC0.56□□□□□ -2.32
PCIF1Q9H4Z3 snoU13.17-201ENST00000458802 104 ntBASIC0.56□□□□□ -2.32
PCIF1Q9H4Z3 MIR103A1-201ENST00000362165 78 ntBASIC0.55□□□□□ -2.32
PCIF1Q9H4Z3 RNU6-624P-201ENST00000363411 107 ntBASIC0.55□□□□□ -2.32
PCIF1Q9H4Z3 RNU6V-201ENST00000384105 107 ntBASIC0.55□□□□□ -2.32
PCIF1Q9H4Z3 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.55□□□□□ -2.32
PCIF1Q9H4Z3 AC069503.3-201ENST00000618674 145 ntBASIC0.55□□□□□ -2.32
PCIF1Q9H4Z3 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.55□□□□□ -2.32
PCIF1Q9H4Z3 AC010487.4-201ENST00000637027 61 ntBASIC0.55□□□□□ -2.32
PCIF1Q9H4Z3 SNORD114-23-201ENST00000363536 72 ntBASIC0.54□□□□□ -2.32
PCIF1Q9H4Z3 RNA5SP173-201ENST00000364857 136 ntBASIC0.53□□□□□ -2.32
PCIF1Q9H4Z3 RNU6-54P-201ENST00000365563 107 ntBASIC0.53□□□□□ -2.32
PCIF1Q9H4Z3 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
PCIF1Q9H4Z3 AL450471.1-201ENST00000447509 127 ntBASIC0.53□□□□□ -2.32
PCIF1Q9H4Z3 RNU6-1232P-201ENST00000516299 86 ntBASIC0.53□□□□□ -2.32
PCIF1Q9H4Z3 RNU6-1108P-201ENST00000516308 104 ntBASIC0.53□□□□□ -2.32
PCIF1Q9H4Z3 RNU5B-6P-201ENST00000516765 68 ntBASIC0.53□□□□□ -2.32
PCIF1Q9H4Z3 MIR4711-201ENST00000578274 70 ntBASIC0.53□□□□□ -2.32
PCIF1Q9H4Z3 YWHAEP2-201ENST00000580066 112 ntBASIC0.53□□□□□ -2.32
PCIF1Q9H4Z3 Y_RNA.205-201ENST00000364128 113 ntBASIC0.52□□□□□ -2.33
PCIF1Q9H4Z3 SNORA2A-201ENST00000383885 135 ntBASIC0.52□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-863P-201ENST00000515989 104 ntBASIC0.52□□□□□ -2.33
PCIF1Q9H4Z3 MIR5706-201ENST00000579841 80 ntBASIC0.52□□□□□ -2.33
PCIF1Q9H4Z3 uc_338.17-201ENST00000619633 179 ntBASIC0.52□□□□□ -2.33
PCIF1Q9H4Z3 MIR5087-201ENST00000635826 76 ntBASIC0.52□□□□□ -2.33
PCIF1Q9H4Z3 Y_RNA.258-201ENST00000364613 105 ntBASIC0.51□□□□□ -2.33
PCIF1Q9H4Z3 MIR193B-201ENST00000384907 83 ntBASIC0.51□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-1177P-201ENST00000391058 104 ntBASIC0.51□□□□□ -2.33
PCIF1Q9H4Z3 HMGN2P22-201ENST00000427588 175 ntBASIC0.51□□□□□ -2.33
PCIF1Q9H4Z3 MIR4473-201ENST00000583731 91 ntBASIC0.51□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-208P-201ENST00000362431 107 ntBASIC0.5□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-161P-201ENST00000363051 106 ntBASIC0.5□□□□□ -2.33
PCIF1Q9H4Z3 Y_RNA.316-201ENST00000365118 111 ntBASIC0.5□□□□□ -2.33
PCIF1Q9H4Z3 MIR760-201ENST00000390220 80 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 226.7 ms