Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 RNU6-633P-201ENST00000362612 103 ntBASIC0.41□□□□□ -2.34
CLCN3P51790 SNORD115-27-201ENST00000364430 82 ntBASIC0.41□□□□□ -2.34
CLCN3P51790 RNA5SP292-201ENST00000390974 118 ntBASIC0.41□□□□□ -2.34
CLCN3P51790 RNA5SP170-201ENST00000517150 101 ntBASIC0.41□□□□□ -2.34
CLCN3P51790 RNU6-811P-201ENST00000384069 107 ntBASIC0.4□□□□□ -2.35
CLCN3P51790 RNU7-74P-201ENST00000459104 62 ntBASIC0.4□□□□□ -2.35
CLCN3P51790 MIR103A1-201ENST00000362165 78 ntBASIC0.39□□□□□ -2.35
CLCN3P51790 RNU1-141P-201ENST00000364623 158 ntBASIC0.39□□□□□ -2.35
CLCN3P51790 SNORD116-22-201ENST00000384430 92 ntBASIC0.39□□□□□ -2.35
CLCN3P51790 RNY4P30-201ENST00000410216 95 ntBASIC0.39□□□□□ -2.35
CLCN3P51790 Y_RNA.593-201ENST00000410292 98 ntBASIC0.39□□□□□ -2.35
CLCN3P51790 RNA5SP484-201ENST00000458857 111 ntBASIC0.39□□□□□ -2.35
CLCN3P51790 AC073869.9-201ENST00000641610 120 ntBASIC0.39□□□□□ -2.35
CLCN3P51790 Y_RNA.239-201ENST00000364444 113 ntBASIC0.38□□□□□ -2.35
CLCN3P51790 SNORA24B-201ENST00000384176 131 ntBASIC0.38□□□□□ -2.35
CLCN3P51790 Y_RNA.491-201ENST00000384417 107 ntBASIC0.38□□□□□ -2.35
CLCN3P51790 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
CLCN3P51790 MIR548U-201ENST00000390728 81 ntBASIC0.38□□□□□ -2.35
CLCN3P51790 MIR548L-201ENST00000408303 86 ntBASIC0.38□□□□□ -2.35
CLCN3P51790 RNU6-402P-201ENST00000410678 103 ntBASIC0.38□□□□□ -2.35
CLCN3P51790 MIR5706-201ENST00000579841 80 ntBASIC0.38□□□□□ -2.35
CLCN3P51790 SNORA70.25-201ENST00000612741 95 ntBASIC0.38□□□□□ -2.35
CLCN3P51790 Y_RNA.43-201ENST00000362670 111 ntBASIC0.37□□□□□ -2.35
CLCN3P51790 RNU6-509P-201ENST00000363519 107 ntBASIC0.37□□□□□ -2.35
CLCN3P51790 RNA5SP325-201ENST00000363756 130 ntBASIC0.37□□□□□ -2.35
CLCN3P51790 U3.27-201ENST00000391237 200 ntBASIC0.37□□□□□ -2.35
CLCN3P51790 RNU6-1232P-201ENST00000516299 86 ntBASIC0.37□□□□□ -2.35
CLCN3P51790 SNORA18.5-201ENST00000516616 101 ntBASIC0.37□□□□□ -2.35
CLCN3P51790 RNU6-267P-201ENST00000516714 103 ntBASIC0.37□□□□□ -2.35
CLCN3P51790 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.37□□□□□ -2.35
CLCN3P51790 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
CLCN3P51790 Y_RNA.17-201ENST00000362433 111 ntBASIC0.36□□□□□ -2.35
CLCN3P51790 RNU6-1327P-201ENST00000365302 105 ntBASIC0.36□□□□□ -2.35
CLCN3P51790 MT-TY-201ENST00000387409 66 ntBASIC0.36□□□□□ -2.35
CLCN3P51790 SNORD90-201ENST00000391145 111 ntBASIC0.36□□□□□ -2.35
CLCN3P51790 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
CLCN3P51790 MIR1236-201ENST00000408340 102 ntBASIC0.36□□□□□ -2.35
CLCN3P51790 MIR548O2-201ENST00000616090 70 ntBASIC0.36□□□□□ -2.35
CLCN3P51790 RNU4-32P-201ENST00000363404 141 ntBASIC0.35□□□□□ -2.35
CLCN3P51790 MIR451A-201ENST00000385059 72 ntBASIC0.35□□□□□ -2.35
CLCN3P51790 SNORA63.2-201ENST00000362603 126 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 Y_RNA.258-201ENST00000364613 105 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 RNU6-294P-201ENST00000364999 102 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 Y_RNA.558-201ENST00000384685 113 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 MIR519C-201ENST00000385053 87 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 MIR216B-201ENST00000390186 82 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 AC108740.1-201ENST00000498629 225 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 RNU7-153P-201ENST00000516455 62 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 MIR4796-201ENST00000580742 81 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 AC069503.3-201ENST00000618674 145 ntBASIC0.34□□□□□ -2.36
CLCN3P51790 RNU6-1255P-201ENST00000363434 112 ntBASIC0.33□□□□□ -2.36
CLCN3P51790 RNA5SP457-201ENST00000363657 124 ntBASIC0.33□□□□□ -2.36
CLCN3P51790 RNU6-1051P-201ENST00000365471 102 ntBASIC0.33□□□□□ -2.36
CLCN3P51790 Y_RNA.423-201ENST00000384057 113 ntBASIC0.33□□□□□ -2.36
CLCN3P51790 MIR330-201ENST00000362196 94 ntBASIC0.32□□□□□ -2.36
CLCN3P51790 HMGN2P22-201ENST00000427588 175 ntBASIC0.32□□□□□ -2.36
CLCN3P51790 SNORA62.5-201ENST00000516634 120 ntBASIC0.32□□□□□ -2.36
CLCN3P51790 NAMPTP3-201ENST00000569273 224 ntBASIC0.32□□□□□ -2.36
CLCN3P51790 MIR3140-201ENST00000583685 90 ntBASIC0.32□□□□□ -2.36
CLCN3P51790 MIR8087-201ENST00000612745 78 ntBASIC0.32□□□□□ -2.36
CLCN3P51790 MIR548BB-201ENST00000626714 66 ntBASIC0.32□□□□□ -2.36
CLCN3P51790 SNORA2A-201ENST00000383885 135 ntBASIC0.31□□□□□ -2.36
CLCN3P51790 RNU6-815P-201ENST00000384080 113 ntBASIC0.31□□□□□ -2.36
CLCN3P51790 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.31□□□□□ -2.36
CLCN3P51790 RNA5SP134-201ENST00000516492 96 ntBASIC0.31□□□□□ -2.36
CLCN3P51790 RNA5SP330-201ENST00000517096 96 ntBASIC0.31□□□□□ -2.36
CLCN3P51790 AC140658.3-201ENST00000567603 271 ntBASIC0.31□□□□□ -2.36
CLCN3P51790 MIR4514-201ENST00000581410 57 ntBASIC0.31□□□□□ -2.36
CLCN3P51790 RNU6-624P-201ENST00000363411 107 ntBASIC0.3□□□□□ -2.36
CLCN3P51790 RNU6-1134P-201ENST00000365156 101 ntBASIC0.3□□□□□ -2.36
CLCN3P51790 MIR501-201ENST00000390204 84 ntBASIC0.3□□□□□ -2.36
CLCN3P51790 SNORD110-201ENST00000408189 75 ntBASIC0.3□□□□□ -2.36
CLCN3P51790 AC006160.2-201ENST00000637708 154 ntBASIC0.3□□□□□ -2.36
CLCN3P51790 Y_RNA.125-201ENST00000363371 111 ntBASIC0.29□□□□□ -2.36
CLCN3P51790 RNA5SP128-201ENST00000365305 116 ntBASIC0.29□□□□□ -2.36
CLCN3P51790 RNU6-979P-201ENST00000383896 107 ntBASIC0.29□□□□□ -2.36
CLCN3P51790 AC006210.1-201ENST00000424882 111 ntBASIC0.29□□□□□ -2.36
CLCN3P51790 AC093729.1-201ENST00000513074 128 ntBASIC0.29□□□□□ -2.36
CLCN3P51790 SNORA25.13-201ENST00000516395 103 ntBASIC0.29□□□□□ -2.36
CLCN3P51790 RNU6-1057P-201ENST00000517162 102 ntBASIC0.29□□□□□ -2.36
CLCN3P51790 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.29□□□□□ -2.36
CLCN3P51790 MIR4460-201ENST00000577862 86 ntBASIC0.29□□□□□ -2.36
CLCN3P51790 MIR548AD-201ENST00000584780 82 ntBASIC0.29□□□□□ -2.36
CLCN3P51790 RNU6-161P-201ENST00000363051 106 ntBASIC0.28□□□□□ -2.36
CLCN3P51790 MIR450A2-201ENST00000385022 100 ntBASIC0.28□□□□□ -2.36
CLCN3P51790 RNU6-762P-201ENST00000517107 102 ntBASIC0.28□□□□□ -2.36
CLCN3P51790 AC069113.3-201ENST00000521019 150 ntBASIC0.28□□□□□ -2.36
CLCN3P51790 MIR760-201ENST00000390220 80 ntBASIC0.27□□□□□ -2.37
CLCN3P51790 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.27□□□□□ -2.37
CLCN3P51790 snoU13.17-201ENST00000458802 104 ntBASIC0.27□□□□□ -2.37
CLCN3P51790 FGF7P7-201ENST00000514120 227 ntBASIC0.27□□□□□ -2.37
CLCN3P51790 YWHAEP2-201ENST00000580066 112 ntBASIC0.27□□□□□ -2.37
CLCN3P51790 MIR5588-201ENST00000581890 63 ntBASIC0.27□□□□□ -2.37
CLCN3P51790 Y_RNA.73-201ENST00000362910 113 ntBASIC0.26□□□□□ -2.37
CLCN3P51790 RNU6-495P-201ENST00000362995 107 ntBASIC0.26□□□□□ -2.37
CLCN3P51790 Y_RNA.115-201ENST00000363272 98 ntBASIC0.26□□□□□ -2.37
CLCN3P51790 RNY4P3-201ENST00000365254 95 ntBASIC0.26□□□□□ -2.37
CLCN3P51790 RNU6-54P-201ENST00000365563 107 ntBASIC0.26□□□□□ -2.37
CLCN3P51790 RNU6V-201ENST00000384105 107 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 827.8 ms