Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.08□□□□□ -2.42
CTCFP49711 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.08□□□□□ -2.42
CTCFP49711 MIR4439-201ENST00000583746 80 ntBASIC-0.08□□□□□ -2.42
CTCFP49711 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.08□□□□□ -2.42
CTCFP49711 SNORD45B-201ENST00000364617 72 ntBASIC-0.09□□□□□ -2.42
CTCFP49711 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.09□□□□□ -2.42
CTCFP49711 MIR876-201ENST00000401147 81 ntBASIC-0.09□□□□□ -2.42
CTCFP49711 RNU7-165P-201ENST00000458864 60 ntBASIC-0.09□□□□□ -2.42
CTCFP49711 MIR1295B-201ENST00000636144 60 ntBASIC-0.09□□□□□ -2.42
CTCFP49711 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.09□□□□□ -2.42
CTCFP49711 SNORD101-201ENST00000384027 73 ntBASIC-0.1□□□□□ -2.43
CTCFP49711 SNORA75.1-201ENST00000391130 148 ntBASIC-0.1□□□□□ -2.43
CTCFP49711 RNU6-180P-201ENST00000516697 61 ntBASIC-0.1□□□□□ -2.43
CTCFP49711 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.1□□□□□ -2.43
CTCFP49711 MIR4460-201ENST00000577862 86 ntBASIC-0.1□□□□□ -2.43
CTCFP49711 MIR4696-201ENST00000581431 70 ntBASIC-0.1□□□□□ -2.43
CTCFP49711 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.1□□□□□ -2.43
CTCFP49711 AL365222.1-201ENST00000614661 98 ntBASIC-0.1□□□□□ -2.43
CTCFP49711 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.1□□□□□ -2.43
CTCFP49711 RNU6-664P-201ENST00000362381 107 ntBASIC-0.11□□□□□ -2.43
CTCFP49711 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.11□□□□□ -2.43
CTCFP49711 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.11□□□□□ -2.43
CTCFP49711 RNU6-929P-201ENST00000384429 107 ntBASIC-0.11□□□□□ -2.43
CTCFP49711 RNA5SP163-201ENST00000410304 99 ntBASIC-0.11□□□□□ -2.43
CTCFP49711 RNU6-412P-201ENST00000516434 106 ntBASIC-0.11□□□□□ -2.43
CTCFP49711 YWHAEP2-201ENST00000580066 112 ntBASIC-0.11□□□□□ -2.43
CTCFP49711 MIR4473-201ENST00000583731 91 ntBASIC-0.11□□□□□ -2.43
CTCFP49711 MIR516B1-201ENST00000385211 90 ntBASIC-0.12□□□□□ -2.43
CTCFP49711 MT-TY-201ENST00000387409 66 ntBASIC-0.12□□□□□ -2.43
CTCFP49711 RNU7-159P-201ENST00000459284 62 ntBASIC-0.12□□□□□ -2.43
CTCFP49711 RNU6-75P-201ENST00000515944 104 ntBASIC-0.12□□□□□ -2.43
CTCFP49711 AL513043.2-201ENST00000573941 143 ntBASIC-0.12□□□□□ -2.43
CTCFP49711 AC084368.1-201ENST00000620935 65 ntBASIC-0.12□□□□□ -2.43
CTCFP49711 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.13□□□□□ -2.43
CTCFP49711 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.14□□□□□ -2.43
CTCFP49711 RNU4-36P-201ENST00000364294 144 ntBASIC-0.14□□□□□ -2.43
CTCFP49711 SNORA32.1-201ENST00000364514 115 ntBASIC-0.14□□□□□ -2.43
CTCFP49711 RNU6-813P-201ENST00000384691 107 ntBASIC-0.14□□□□□ -2.43
CTCFP49711 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.14□□□□□ -2.43
CTCFP49711 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.14□□□□□ -2.43
CTCFP49711 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.15□□□□□ -2.43
CTCFP49711 RNU6-476P-201ENST00000384726 107 ntBASIC-0.15□□□□□ -2.43
CTCFP49711 MIR4777-201ENST00000583710 86 ntBASIC-0.15□□□□□ -2.43
CTCFP49711 MIR548Z-201ENST00000584743 97 ntBASIC-0.15□□□□□ -2.43
CTCFP49711 MIR8064-201ENST00000612863 90 ntBASIC-0.15□□□□□ -2.43
CTCFP49711 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.15□□□□□ -2.43
CTCFP49711 MIR601-201ENST00000385256 79 ntBASIC-0.16□□□□□ -2.44
CTCFP49711 RNU6-935P-201ENST00000410371 100 ntBASIC-0.16□□□□□ -2.44
CTCFP49711 SNORA19.1-201ENST00000410656 129 ntBASIC-0.16□□□□□ -2.44
CTCFP49711 RNU7-85P-201ENST00000458851 63 ntBASIC-0.16□□□□□ -2.44
CTCFP49711 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.16□□□□□ -2.44
CTCFP49711 CR383656.4-201ENST00000546909 122 ntBASIC-0.16□□□□□ -2.44
CTCFP49711 MIR548AE1-201ENST00000583292 70 ntBASIC-0.16□□□□□ -2.44
CTCFP49711 AC103810.7-201ENST00000607821 91 ntBASIC-0.16□□□□□ -2.44
CTCFP49711 MIR148A-201ENST00000362215 68 ntBASIC-0.17□□□□□ -2.44
CTCFP49711 RNA5SP205-201ENST00000364653 136 ntBASIC-0.17□□□□□ -2.44
CTCFP49711 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.17□□□□□ -2.44
CTCFP49711 RNU6-904P-201ENST00000516206 101 ntBASIC-0.17□□□□□ -2.44
CTCFP49711 RNU6-795P-201ENST00000516323 103 ntBASIC-0.17□□□□□ -2.44
CTCFP49711 AC012531.4-201ENST00000616509 177 ntBASIC-0.17□□□□□ -2.44
CTCFP49711 uc_338.10-201ENST00000621872 182 ntBASIC-0.17□□□□□ -2.44
CTCFP49711 MIR6514-201ENST00000622549 70 ntBASIC-0.17□□□□□ -2.44
CTCFP49711 MIR655-201ENST00000362159 97 ntBASIC-0.18□□□□□ -2.44
CTCFP49711 SNORA18.1-201ENST00000363418 128 ntBASIC-0.18□□□□□ -2.44
CTCFP49711 RNU6-22P-201ENST00000384355 107 ntBASIC-0.18□□□□□ -2.44
CTCFP49711 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.18□□□□□ -2.44
CTCFP49711 RNU6-1168P-201ENST00000390831 104 ntBASIC-0.18□□□□□ -2.44
CTCFP49711 RNU6-644P-201ENST00000391155 98 ntBASIC-0.18□□□□□ -2.44
CTCFP49711 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.18□□□□□ -2.44
CTCFP49711 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.18□□□□□ -2.44
CTCFP49711 MIR3910-1-201ENST00000580936 111 ntBASIC-0.18□□□□□ -2.44
CTCFP49711 RNU6-1117P-201ENST00000384525 104 ntBASIC-0.19□□□□□ -2.44
CTCFP49711 MIR1207-201ENST00000408249 87 ntBASIC-0.19□□□□□ -2.44
CTCFP49711 SNORD4A-201ENST00000459174 72 ntBASIC-0.19□□□□□ -2.44
CTCFP49711 RNU6-65P-201ENST00000516332 98 ntBASIC-0.19□□□□□ -2.44
CTCFP49711 MIR4536-1-201ENST00000583537 88 ntBASIC-0.19□□□□□ -2.44
CTCFP49711 RN7SL660P-201ENST00000614852 299 ntBASIC-0.19□□□□□ -2.44
CTCFP49711 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.2□□□□□ -2.44
CTCFP49711 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.2□□□□□ -2.44
CTCFP49711 MIR106A-201ENST00000384870 81 ntBASIC-0.2□□□□□ -2.44
CTCFP49711 MIR216B-201ENST00000390186 82 ntBASIC-0.2□□□□□ -2.44
CTCFP49711 RNU7-188P-201ENST00000517063 64 ntBASIC-0.2□□□□□ -2.44
CTCFP49711 MIR6507-201ENST00000613630 70 ntBASIC-0.2□□□□□ -2.44
CTCFP49711 MIR548O2-201ENST00000616090 70 ntBASIC-0.2□□□□□ -2.44
CTCFP49711 MIR198-201ENST00000637333 62 ntBASIC-0.2□□□□□ -2.44
CTCFP49711 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.21□□□□□ -2.44
CTCFP49711 AC244250.2-201ENST00000418731 148 ntBASIC-0.21□□□□□ -2.44
CTCFP49711 SCARNA23-201ENST00000516060 130 ntBASIC-0.21□□□□□ -2.44
CTCFP49711 RNU6-62P-201ENST00000516526 102 ntBASIC-0.21□□□□□ -2.44
CTCFP49711 U4.2-201ENST00000618561 85 ntBASIC-0.21□□□□□ -2.44
CTCFP49711 AC132825.6-201ENST00000638861 357 ntBASIC-0.21□□□□□ -2.44
CTCFP49711 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.22□□□□□ -2.44
CTCFP49711 RNU6-811P-201ENST00000384069 107 ntBASIC-0.22□□□□□ -2.44
CTCFP49711 MIR451A-201ENST00000385059 72 ntBASIC-0.22□□□□□ -2.44
CTCFP49711 RNU6-175P-201ENST00000516896 107 ntBASIC-0.22□□□□□ -2.44
CTCFP49711 MIR6129-201ENST00000616087 109 ntBASIC-0.22□□□□□ -2.44
CTCFP49711 RNU6-834P-201ENST00000362367 110 ntBASIC-0.23□□□□□ -2.45
CTCFP49711 RNU6-154P-201ENST00000384306 106 ntBASIC-0.23□□□□□ -2.45
CTCFP49711 RNA5SP300-201ENST00000391197 107 ntBASIC-0.23□□□□□ -2.45
CTCFP49711 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.23□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 236.8 ms