Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 MIR4677-201ENST00000584153 80 ntBASIC0.07□□□□□ -2.4
SHMT1P34896 MIR4743-201ENST00000584576 69 ntBASIC0.07□□□□□ -2.4
SHMT1P34896 MIR548Z-201ENST00000584743 97 ntBASIC0.07□□□□□ -2.4
SHMT1P34896 Y_RNA.818-201ENST00000618813 71 ntBASIC0.07□□□□□ -2.4
SHMT1P34896 RNU6-1325P-201ENST00000364905 105 ntBASIC0.06□□□□□ -2.4
SHMT1P34896 RNU6-756P-201ENST00000383997 107 ntBASIC0.06□□□□□ -2.4
SHMT1P34896 RNU6-935P-201ENST00000410371 100 ntBASIC0.06□□□□□ -2.4
SHMT1P34896 RNU6-75P-201ENST00000515944 104 ntBASIC0.06□□□□□ -2.4
SHMT1P34896 SNORA25.13-201ENST00000516395 103 ntBASIC0.06□□□□□ -2.4
SHMT1P34896 RNU6-537P-201ENST00000517277 103 ntBASIC0.06□□□□□ -2.4
SHMT1P34896 RNU6-161P-201ENST00000363051 106 ntBASIC0.05□□□□□ -2.4
SHMT1P34896 RNU6-887P-201ENST00000410660 100 ntBASIC0.05□□□□□ -2.4
SHMT1P34896 MIR4667-201ENST00000578933 66 ntBASIC0.05□□□□□ -2.4
SHMT1P34896 MIR548AI-201ENST00000579940 88 ntBASIC0.05□□□□□ -2.4
SHMT1P34896 RNU6-766P-201ENST00000362478 107 ntBASIC0.04□□□□□ -2.4
SHMT1P34896 Y_RNA.93-201ENST00000363066 109 ntBASIC0.04□□□□□ -2.4
SHMT1P34896 MT-TY-201ENST00000387409 66 ntBASIC0.04□□□□□ -2.4
SHMT1P34896 YWHAEP2-201ENST00000580066 112 ntBASIC0.04□□□□□ -2.4
SHMT1P34896 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.04□□□□□ -2.4
SHMT1P34896 Y_RNA.107-201ENST00000363190 121 ntBASIC0.03□□□□□ -2.4
SHMT1P34896 SNORD58A-201ENST00000383875 65 ntBASIC0.03□□□□□ -2.4
SHMT1P34896 RNU7-85P-201ENST00000458851 63 ntBASIC0.03□□□□□ -2.4
SHMT1P34896 uc_338.10-201ENST00000621872 182 ntBASIC0.03□□□□□ -2.4
SHMT1P34896 Y_RNA.433-201ENST00000384089 102 ntBASIC0.02□□□□□ -2.41
SHMT1P34896 RNY4P18-201ENST00000391107 89 ntBASIC0.02□□□□□ -2.41
SHMT1P34896 SNORA75.1-201ENST00000391130 148 ntBASIC0.02□□□□□ -2.41
SHMT1P34896 RNU6-519P-201ENST00000410590 108 ntBASIC0.02□□□□□ -2.41
SHMT1P34896 RNA5SP285-201ENST00000516619 119 ntBASIC0.02□□□□□ -2.41
SHMT1P34896 MIR3925-201ENST00000584674 77 ntBASIC0.02□□□□□ -2.41
SHMT1P34896 AC084368.1-201ENST00000620935 65 ntBASIC0.02□□□□□ -2.41
SHMT1P34896 RNU6-1290P-201ENST00000362957 109 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 Y_RNA.544-201ENST00000384650 113 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 MIR145-201ENST00000384967 88 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 MIR329-2-201ENST00000385029 84 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 MIR516B1-201ENST00000385211 90 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 MIR548U-201ENST00000390728 81 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 U3.27-201ENST00000391237 200 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 AL031737.1-201ENST00000450125 223 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 SNORD4B-201ENST00000459083 72 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 Y_RNA.677-201ENST00000516401 85 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 MIR4290-201ENST00000583807 95 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 U2.22-201ENST00000636441 106 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 MIR371B-201ENST00000638082 66 ntBASIC0.01□□□□□ -2.41
SHMT1P34896 SNORD114-5-201ENST00000362928 70 ntBASIC0□□□□□ -2.41
SHMT1P34896 SNORD116-10-201ENST00000363791 102 ntBASIC0□□□□□ -2.41
SHMT1P34896 MIR593-201ENST00000384856 100 ntBASIC0□□□□□ -2.41
SHMT1P34896 SCARNA11.2-201ENST00000517183 154 ntBASIC0□□□□□ -2.41
SHMT1P34896 MIR4473-201ENST00000583731 91 ntBASIC0□□□□□ -2.41
SHMT1P34896 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.01□□□□□ -2.41
SHMT1P34896 MIR451A-201ENST00000385059 72 ntBASIC-0.01□□□□□ -2.41
SHMT1P34896 RNU7-61P-201ENST00000515897 61 ntBASIC-0.01□□□□□ -2.41
SHMT1P34896 RNU6-109P-201ENST00000516364 107 ntBASIC-0.01□□□□□ -2.41
SHMT1P34896 RNU6-184P-201ENST00000516514 107 ntBASIC-0.01□□□□□ -2.41
SHMT1P34896 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.02□□□□□ -2.41
SHMT1P34896 MIR548O2-201ENST00000616090 70 ntBASIC-0.02□□□□□ -2.41
SHMT1P34896 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.02□□□□□ -2.41
SHMT1P34896 SNORD114-16-201ENST00000363044 70 ntBASIC-0.03□□□□□ -2.41
SHMT1P34896 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.03□□□□□ -2.41
SHMT1P34896 MIR876-201ENST00000401147 81 ntBASIC-0.03□□□□□ -2.41
SHMT1P34896 RNU6-158P-201ENST00000517104 100 ntBASIC-0.03□□□□□ -2.41
SHMT1P34896 MIR2052-201ENST00000636055 55 ntBASIC-0.03□□□□□ -2.41
SHMT1P34896 RNU6-755P-201ENST00000364400 103 ntBASIC-0.04□□□□□ -2.42
SHMT1P34896 Y_RNA.291-201ENST00000364886 113 ntBASIC-0.04□□□□□ -2.42
SHMT1P34896 RNU6-811P-201ENST00000384069 107 ntBASIC-0.04□□□□□ -2.42
SHMT1P34896 RNU7-159P-201ENST00000459284 62 ntBASIC-0.04□□□□□ -2.42
SHMT1P34896 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.04□□□□□ -2.42
SHMT1P34896 MIR3064-201ENST00000581130 66 ntBASIC-0.04□□□□□ -2.42
SHMT1P34896 RNU6-132P-201ENST00000383863 107 ntBASIC-0.05□□□□□ -2.42
SHMT1P34896 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.05□□□□□ -2.42
SHMT1P34896 RNA5SP163-201ENST00000410304 99 ntBASIC-0.05□□□□□ -2.42
SHMT1P34896 RNU6-919P-201ENST00000516731 104 ntBASIC-0.05□□□□□ -2.42
SHMT1P34896 AC104996.3-201ENST00000590718 94 ntBASIC-0.05□□□□□ -2.42
SHMT1P34896 MIR450A1-201ENST00000362262 91 ntBASIC-0.06□□□□□ -2.42
SHMT1P34896 RNU6-215P-201ENST00000365169 102 ntBASIC-0.06□□□□□ -2.42
SHMT1P34896 RNU6V-201ENST00000384105 107 ntBASIC-0.06□□□□□ -2.42
SHMT1P34896 SNORD20-201ENST00000384550 80 ntBASIC-0.06□□□□□ -2.42
SHMT1P34896 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
SHMT1P34896 RNU7-165P-201ENST00000458864 60 ntBASIC-0.06□□□□□ -2.42
SHMT1P34896 RNU6-180P-201ENST00000516697 61 ntBASIC-0.06□□□□□ -2.42
SHMT1P34896 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.06□□□□□ -2.42
SHMT1P34896 SNORD114-29-201ENST00000364819 70 ntBASIC-0.07□□□□□ -2.42
SHMT1P34896 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.07□□□□□ -2.42
SHMT1P34896 MTATP8P2-201ENST00000435212 202 ntBASIC-0.07□□□□□ -2.42
SHMT1P34896 RNA5SP395-201ENST00000516567 118 ntBASIC-0.07□□□□□ -2.42
SHMT1P34896 U7.3-201ENST00000616123 62 ntBASIC-0.07□□□□□ -2.42
SHMT1P34896 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.08□□□□□ -2.42
SHMT1P34896 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.08□□□□□ -2.42
SHMT1P34896 AC104692.1-201ENST00000472406 90 ntBASIC-0.08□□□□□ -2.42
SHMT1P34896 FGF7P7-201ENST00000514120 227 ntBASIC-0.08□□□□□ -2.42
SHMT1P34896 CR383656.4-201ENST00000546909 122 ntBASIC-0.08□□□□□ -2.42
SHMT1P34896 MIR548AE1-201ENST00000583292 70 ntBASIC-0.08□□□□□ -2.42
SHMT1P34896 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.08□□□□□ -2.42
SHMT1P34896 SNORA63.2-201ENST00000362603 126 ntBASIC-0.09□□□□□ -2.42
SHMT1P34896 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.09□□□□□ -2.42
SHMT1P34896 RNU6-154P-201ENST00000384306 106 ntBASIC-0.09□□□□□ -2.42
SHMT1P34896 RNU7-188P-201ENST00000517063 64 ntBASIC-0.09□□□□□ -2.42
SHMT1P34896 MIR6514-201ENST00000622549 70 ntBASIC-0.09□□□□□ -2.42
SHMT1P34896 MIR1295B-201ENST00000636144 60 ntBASIC-0.09□□□□□ -2.42
SHMT1P34896 MIR6759-201ENST00000638110 65 ntBASIC-0.09□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 281 ms