Protein–RNA interactions for Protein: P08247

SYP, Synaptophysin, humanhuman

Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYPP08247 MIR4484-201ENST00000582855 83 ntBASIC1.16□□□□□ -2.22
SYPP08247 RNU6-340P-201ENST00000364005 107 ntBASIC1.15□□□□□ -2.23
SYPP08247 MIR548J-201ENST00000408833 112 ntBASIC1.15□□□□□ -2.23
SYPP08247 RNA5SP47-201ENST00000517230 109 ntBASIC1.15□□□□□ -2.23
SYPP08247 MIR3678-201ENST00000578455 94 ntBASIC1.15□□□□□ -2.23
SYPP08247 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.15□□□□□ -2.23
SYPP08247 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
SYPP08247 Y_RNA.36-201ENST00000362602 112 ntBASIC1.14□□□□□ -2.23
SYPP08247 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
SYPP08247 Y_RNA.606-201ENST00000410579 103 ntBASIC1.14□□□□□ -2.23
SYPP08247 MIR3134-201ENST00000579433 74 ntBASIC1.14□□□□□ -2.23
SYPP08247 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
SYPP08247 RNU6-824P-201ENST00000363724 104 ntBASIC1.13□□□□□ -2.23
SYPP08247 Y_RNA.371-201ENST00000365591 113 ntBASIC1.13□□□□□ -2.23
SYPP08247 Y_RNA.565-201ENST00000384719 101 ntBASIC1.13□□□□□ -2.23
SYPP08247 MIR519E-201ENST00000385075 84 ntBASIC1.13□□□□□ -2.23
SYPP08247 SNORD41.1-201ENST00000391000 69 ntBASIC1.13□□□□□ -2.23
SYPP08247 SNORD99-201ENST00000408612 74 ntBASIC1.13□□□□□ -2.23
SYPP08247 U6.81-201ENST00000612550 106 ntBASIC1.13□□□□□ -2.23
SYPP08247 Y_RNA.545-201ENST00000384652 105 ntBASIC1.12□□□□□ -2.23
SYPP08247 RNU6-1177P-201ENST00000391058 104 ntBASIC1.12□□□□□ -2.23
SYPP08247 AC244098.3-201ENST00000424803 96 ntBASIC1.12□□□□□ -2.23
SYPP08247 PVT1_3.1-201ENST00000620853 95 ntBASIC1.12□□□□□ -2.23
SYPP08247 RNU6-726P-201ENST00000364680 107 ntBASIC1.11□□□□□ -2.23
SYPP08247 MIR216B-201ENST00000390186 82 ntBASIC1.11□□□□□ -2.23
SYPP08247 RNU6-523P-201ENST00000516304 54 ntBASIC1.11□□□□□ -2.23
SYPP08247 AC011195.1-201ENST00000578177 177 ntBASIC1.11□□□□□ -2.23
SYPP08247 MIR18A-201ENST00000362310 71 ntBASIC1.1□□□□□ -2.23
SYPP08247 RNU6-154P-201ENST00000384306 106 ntBASIC1.1□□□□□ -2.23
SYPP08247 SCARNA16.5-201ENST00000517114 183 ntBASIC1.1□□□□□ -2.23
SYPP08247 MIR6767-201ENST00000637302 66 ntBASIC1.1□□□□□ -2.23
SYPP08247 RNU6-681P-201ENST00000364012 104 ntBASIC1.09□□□□□ -2.23
SYPP08247 Y_RNA.258-201ENST00000364613 105 ntBASIC1.09□□□□□ -2.23
SYPP08247 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.09□□□□□ -2.23
SYPP08247 RNU7-74P-201ENST00000459104 62 ntBASIC1.09□□□□□ -2.23
SYPP08247 RNU6-330P-201ENST00000363015 107 ntBASIC1.08□□□□□ -2.24
SYPP08247 RNU6-411P-201ENST00000384451 107 ntBASIC1.08□□□□□ -2.24
SYPP08247 MIR548L-201ENST00000408303 86 ntBASIC1.08□□□□□ -2.24
SYPP08247 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.08□□□□□ -2.24
SYPP08247 MIR548O2-201ENST00000616090 70 ntBASIC1.08□□□□□ -2.24
SYPP08247 MIR6779-201ENST00000617283 64 ntBASIC1.08□□□□□ -2.24
SYPP08247 RNU4-45P-201ENST00000365469 141 ntBASIC1.07□□□□□ -2.24
SYPP08247 RNU6-716P-201ENST00000365621 103 ntBASIC1.07□□□□□ -2.24
SYPP08247 MIR1285-1-201ENST00000408593 84 ntBASIC1.07□□□□□ -2.24
SYPP08247 AC073261.1-201ENST00000429409 121 ntBASIC1.07□□□□□ -2.24
SYPP08247 AC093423.1-201ENST00000440817 142 ntBASIC1.07□□□□□ -2.24
SYPP08247 RNU6-70P-201ENST00000516438 60 ntBASIC1.07□□□□□ -2.24
SYPP08247 Y_RNA.681-201ENST00000516445 113 ntBASIC1.07□□□□□ -2.24
SYPP08247 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.07□□□□□ -2.24
SYPP08247 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
SYPP08247 MIR664A-201ENST00000626086 82 ntBASIC1.07□□□□□ -2.24
SYPP08247 MIR6828-201ENST00000636181 60 ntBASIC1.07□□□□□ -2.24
SYPP08247 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.06□□□□□ -2.24
SYPP08247 AC211469.2-201ENST00000605461 205 ntBASIC1.06□□□□□ -2.24
SYPP08247 AL353765.1-201ENST00000605514 183 ntBASIC1.06□□□□□ -2.24
SYPP08247 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.06□□□□□ -2.24
SYPP08247 RNU6-382P-201ENST00000365181 106 ntBASIC1.05□□□□□ -2.24
SYPP08247 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.05□□□□□ -2.24
SYPP08247 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.05□□□□□ -2.24
SYPP08247 MIR4773-1-201ENST00000637203 78 ntBASIC1.05□□□□□ -2.24
SYPP08247 SNORA36.1-201ENST00000363424 132 ntBASIC1.04□□□□□ -2.24
SYPP08247 SNORA8.1-201ENST00000384250 140 ntBASIC1.04□□□□□ -2.24
SYPP08247 RNU6-1015P-201ENST00000517121 99 ntBASIC1.04□□□□□ -2.24
SYPP08247 MIR5000-201ENST00000577717 103 ntBASIC1.04□□□□□ -2.24
SYPP08247 MIR6857-201ENST00000613267 93 ntBASIC1.04□□□□□ -2.24
SYPP08247 RNU6-269P-201ENST00000391077 97 ntBASIC1.03□□□□□ -2.24
SYPP08247 SNORD75.2-201ENST00000408784 58 ntBASIC1.03□□□□□ -2.24
SYPP08247 RNU7-24P-201ENST00000458867 62 ntBASIC1.03□□□□□ -2.24
SYPP08247 RNU6-687P-201ENST00000516443 89 ntBASIC1.03□□□□□ -2.24
SYPP08247 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.03□□□□□ -2.24
SYPP08247 RNU6-495P-201ENST00000362995 107 ntBASIC1.02□□□□□ -2.25
SYPP08247 RNU6-274P-201ENST00000459566 107 ntBASIC1.02□□□□□ -2.25
SYPP08247 OR2A41P-201ENST00000473586 105 ntBASIC1.02□□□□□ -2.25
SYPP08247 RNA5SP94-201ENST00000516917 108 ntBASIC1.02□□□□□ -2.25
SYPP08247 MIR4661-201ENST00000582720 75 ntBASIC1.02□□□□□ -2.25
SYPP08247 AL162376.1-201ENST00000624117 175 ntBASIC1.02□□□□□ -2.25
SYPP08247 RNU6-54P-201ENST00000365563 107 ntBASIC1.01□□□□□ -2.25
SYPP08247 SNORA8.2-201ENST00000384372 139 ntBASIC1.01□□□□□ -2.25
SYPP08247 MT-TY-201ENST00000387409 66 ntBASIC1.01□□□□□ -2.25
SYPP08247 RNU6-587P-201ENST00000391282 106 ntBASIC1.01□□□□□ -2.25
SYPP08247 MIR3675-201ENST00000583661 73 ntBASIC1.01□□□□□ -2.25
SYPP08247 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.01□□□□□ -2.25
SYPP08247 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1□□□□□ -2.25
SYPP08247 RNA5SP325-201ENST00000363756 130 ntBASIC1□□□□□ -2.25
SYPP08247 RNU1-141P-201ENST00000364623 158 ntBASIC1□□□□□ -2.25
SYPP08247 RNU6V-201ENST00000384105 107 ntBASIC1□□□□□ -2.25
SYPP08247 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1□□□□□ -2.25
SYPP08247 RNA5SP222-201ENST00000411039 105 ntBASIC1□□□□□ -2.25
SYPP08247 RNA5SP227-201ENST00000516184 113 ntBASIC1□□□□□ -2.25
SYPP08247 RNU6-752P-201ENST00000516376 102 ntBASIC1□□□□□ -2.25
SYPP08247 RNA5SP268-201ENST00000516828 124 ntBASIC1□□□□□ -2.25
SYPP08247 SNORD114-21-201ENST00000606412 72 ntBASIC1□□□□□ -2.25
SYPP08247 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
SYPP08247 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.99□□□□□ -2.25
SYPP08247 MIR532-201ENST00000385025 91 ntBASIC0.99□□□□□ -2.25
SYPP08247 NAMPTP3-201ENST00000569273 224 ntBASIC0.99□□□□□ -2.25
SYPP08247 MIR4460-201ENST00000577862 86 ntBASIC0.99□□□□□ -2.25
SYPP08247 Y_RNA.205-201ENST00000364128 113 ntBASIC0.98□□□□□ -2.25
SYPP08247 RNU4-38P-201ENST00000364472 129 ntBASIC0.98□□□□□ -2.25
SYPP08247 RNU6-1241P-201ENST00000384536 107 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 237.5 ms