Protein–RNA interactions for Protein: Q9NVE5

USP40, Ubiquitin carboxyl-terminal hydrolase 40, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP40Q9NVE5 RMST_2.1-201ENST00000617263 136 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
USP40Q9NVE5 RNU6-824P-201ENST00000363724 104 ntBASIC1.47□□□□□ -2.17
USP40Q9NVE5 RNU6-340P-201ENST00000364005 107 ntBASIC1.47□□□□□ -2.17
USP40Q9NVE5 SNORD113.3-201ENST00000364630 78 ntBASIC1.47□□□□□ -2.17
USP40Q9NVE5 MIR599-201ENST00000385069 95 ntBASIC1.47□□□□□ -2.17
USP40Q9NVE5 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
USP40Q9NVE5 AC023827.1-201ENST00000569247 97 ntBASIC1.47□□□□□ -2.17
USP40Q9NVE5 Y_RNA.371-201ENST00000365591 113 ntBASIC1.46□□□□□ -2.18
USP40Q9NVE5 SNORA31.2-201ENST00000516019 134 ntBASIC1.46□□□□□ -2.18
USP40Q9NVE5 AC068338.1-201ENST00000565567 176 ntBASIC1.46□□□□□ -2.18
USP40Q9NVE5 MIR4676-201ENST00000583078 72 ntBASIC1.46□□□□□ -2.18
USP40Q9NVE5 AC008608.1-201ENST00000603910 127 ntBASIC1.46□□□□□ -2.18
USP40Q9NVE5 Y_RNA.239-201ENST00000364444 113 ntBASIC1.45□□□□□ -2.18
USP40Q9NVE5 Y_RNA.258-201ENST00000364613 105 ntBASIC1.45□□□□□ -2.18
USP40Q9NVE5 RNU6-871P-201ENST00000516122 100 ntBASIC1.45□□□□□ -2.18
USP40Q9NVE5 RNU7-156P-201ENST00000517214 74 ntBASIC1.45□□□□□ -2.18
USP40Q9NVE5 AC106800.4-201ENST00000614905 153 ntBASIC1.45□□□□□ -2.18
USP40Q9NVE5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
USP40Q9NVE5 SNORA8.1-201ENST00000384250 140 ntBASIC1.44□□□□□ -2.18
USP40Q9NVE5 RNU6-1052P-201ENST00000411398 104 ntBASIC1.44□□□□□ -2.18
USP40Q9NVE5 RPS26P5-201ENST00000418544 335 ntBASIC1.44□□□□□ -2.18
USP40Q9NVE5 RNU6-719P-201ENST00000516671 104 ntBASIC1.44□□□□□ -2.18
USP40Q9NVE5 RNU7-10P-201ENST00000607194 63 ntBASIC1.44□□□□□ -2.18
USP40Q9NVE5 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.44□□□□□ -2.18
USP40Q9NVE5 SNORD114-27-201ENST00000363766 70 ntBASIC1.43□□□□□ -2.18
USP40Q9NVE5 Y_RNA.606-201ENST00000410579 103 ntBASIC1.43□□□□□ -2.18
USP40Q9NVE5 RNU7-102P-201ENST00000458948 62 ntBASIC1.43□□□□□ -2.18
USP40Q9NVE5 U6.81-201ENST00000612550 106 ntBASIC1.43□□□□□ -2.18
USP40Q9NVE5 Y_RNA.340-201ENST00000365330 92 ntBASIC1.42□□□□□ -2.18
USP40Q9NVE5 RNU6-535P-201ENST00000384722 107 ntBASIC1.42□□□□□ -2.18
USP40Q9NVE5 MIR150-201ENST00000385048 84 ntBASIC1.42□□□□□ -2.18
USP40Q9NVE5 MIR451A-201ENST00000385059 72 ntBASIC1.42□□□□□ -2.18
USP40Q9NVE5 RNU6-935P-201ENST00000410371 100 ntBASIC1.42□□□□□ -2.18
USP40Q9NVE5 RNU7-21P-201ENST00000459430 62 ntBASIC1.42□□□□□ -2.18
USP40Q9NVE5 RNA5SP327-201ENST00000362494 101 ntBASIC1.41□□□□□ -2.18
USP40Q9NVE5 RNU6-649P-201ENST00000384463 107 ntBASIC1.41□□□□□ -2.18
USP40Q9NVE5 RNU6-910P-201ENST00000390844 107 ntBASIC1.41□□□□□ -2.18
USP40Q9NVE5 AC244505.6-201ENST00000452829 130 ntBASIC1.41□□□□□ -2.18
USP40Q9NVE5 AC138907.6-201ENST00000568401 126 ntBASIC1.41□□□□□ -2.18
USP40Q9NVE5 AC138869.1-201ENST00000568623 124 ntBASIC1.41□□□□□ -2.18
USP40Q9NVE5 MIR548AG2-201ENST00000581228 64 ntBASIC1.41□□□□□ -2.18
USP40Q9NVE5 Y_RNA.32-201ENST00000362589 110 ntBASIC1.4□□□□□ -2.19
USP40Q9NVE5 RNU1-93P-201ENST00000364704 169 ntBASIC1.4□□□□□ -2.19
USP40Q9NVE5 SNORD26-201ENST00000384147 75 ntBASIC1.4□□□□□ -2.19
USP40Q9NVE5 MIR222-201ENST00000384992 110 ntBASIC1.4□□□□□ -2.19
USP40Q9NVE5 SNORD30.1-201ENST00000391309 70 ntBASIC1.4□□□□□ -2.19
USP40Q9NVE5 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.4□□□□□ -2.19
USP40Q9NVE5 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.4□□□□□ -2.19
USP40Q9NVE5 MIR4804-201ENST00000581683 73 ntBASIC1.4□□□□□ -2.19
USP40Q9NVE5 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
USP40Q9NVE5 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.4□□□□□ -2.19
USP40Q9NVE5 U6.111-201ENST00000636093 83 ntBASIC1.4□□□□□ -2.19
USP40Q9NVE5 RNU6-800P-201ENST00000384473 103 ntBASIC1.39□□□□□ -2.19
USP40Q9NVE5 SNORD45A-201ENST00000384512 84 ntBASIC1.39□□□□□ -2.19
USP40Q9NVE5 MIR7-2-201ENST00000384970 110 ntBASIC1.39□□□□□ -2.19
USP40Q9NVE5 MIR154-201ENST00000385243 84 ntBASIC1.39□□□□□ -2.19
USP40Q9NVE5 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
USP40Q9NVE5 SNORD111-201ENST00000408139 94 ntBASIC1.39□□□□□ -2.19
USP40Q9NVE5 RNU7-56P-201ENST00000458744 62 ntBASIC1.39□□□□□ -2.19
USP40Q9NVE5 RNU6-287P-201ENST00000516230 98 ntBASIC1.39□□□□□ -2.19
USP40Q9NVE5 MIR4295-201ENST00000585286 85 ntBASIC1.39□□□□□ -2.19
USP40Q9NVE5 AC027335.2-201ENST00000624030 375 ntBASIC1.39□□□□□ -2.19
USP40Q9NVE5 SNORA25.8-201ENST00000364831 128 ntBASIC1.38□□□□□ -2.19
USP40Q9NVE5 Y_RNA.540-201ENST00000384638 111 ntBASIC1.38□□□□□ -2.19
USP40Q9NVE5 AC097510.1-201ENST00000510945 133 ntBASIC1.38□□□□□ -2.19
USP40Q9NVE5 SNORD79.1-201ENST00000516069 84 ntBASIC1.38□□□□□ -2.19
USP40Q9NVE5 SNORA31.14-201ENST00000516728 116 ntBASIC1.38□□□□□ -2.19
USP40Q9NVE5 SNORA70.22-201ENST00000517160 124 ntBASIC1.38□□□□□ -2.19
USP40Q9NVE5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
USP40Q9NVE5 SNORD115-22-201ENST00000364456 82 ntBASIC1.37□□□□□ -2.19
USP40Q9NVE5 RNY4P3-201ENST00000365254 95 ntBASIC1.37□□□□□ -2.19
USP40Q9NVE5 MIR520E-201ENST00000384867 87 ntBASIC1.37□□□□□ -2.19
USP40Q9NVE5 RNU6-663P-201ENST00000391105 106 ntBASIC1.37□□□□□ -2.19
USP40Q9NVE5 MIR938-201ENST00000401216 83 ntBASIC1.37□□□□□ -2.19
USP40Q9NVE5 RNU2-59P-201ENST00000410482 191 ntBASIC1.37□□□□□ -2.19
USP40Q9NVE5 AC022709.1-201ENST00000615967 87 ntBASIC1.37□□□□□ -2.19
USP40Q9NVE5 uc_338.16-201ENST00000621804 95 ntBASIC1.37□□□□□ -2.19
USP40Q9NVE5 Y_RNA.205-201ENST00000364128 113 ntBASIC1.36□□□□□ -2.19
USP40Q9NVE5 RNU6-382P-201ENST00000365181 106 ntBASIC1.36□□□□□ -2.19
USP40Q9NVE5 RNU6-364P-201ENST00000384387 107 ntBASIC1.36□□□□□ -2.19
USP40Q9NVE5 RNU6-939P-201ENST00000384634 107 ntBASIC1.36□□□□□ -2.19
USP40Q9NVE5 AC125388.1-201ENST00000459631 156 ntBASIC1.36□□□□□ -2.19
USP40Q9NVE5 AC087343.1-201ENST00000477341 475 ntBASIC1.36□□□□□ -2.19
USP40Q9NVE5 MIR3675-201ENST00000583661 73 ntBASIC1.36□□□□□ -2.19
USP40Q9NVE5 AC005520.4-201ENST00000604337 90 ntBASIC1.36□□□□□ -2.19
USP40Q9NVE5 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
USP40Q9NVE5 RNA5SP403-201ENST00000363598 108 ntBASIC1.35□□□□□ -2.19
USP40Q9NVE5 SNORD116-24-201ENST00000384549 92 ntBASIC1.35□□□□□ -2.19
USP40Q9NVE5 AL591704.2-201ENST00000421658 181 ntBASIC1.35□□□□□ -2.19
USP40Q9NVE5 RNU7-161P-201ENST00000517289 62 ntBASIC1.35□□□□□ -2.19
USP40Q9NVE5 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.35□□□□□ -2.19
USP40Q9NVE5 MIR6515-201ENST00000619843 57 ntBASIC1.35□□□□□ -2.19
USP40Q9NVE5 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
USP40Q9NVE5 SNORA25-201ENST00000384384 134 ntBASIC1.34□□□□□ -2.19
USP40Q9NVE5 RNU6-1177P-201ENST00000391058 104 ntBASIC1.34□□□□□ -2.19
USP40Q9NVE5 RPS29P1-201ENST00000465274 159 ntBASIC1.34□□□□□ -2.19
USP40Q9NVE5 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.34□□□□□ -2.19
USP40Q9NVE5 MIR6767-201ENST00000637302 66 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 262.3 ms