Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 Y_RNA.491-201ENST00000384417 107 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 SNORD63B-201ENST00000411005 70 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 AC073261.1-201ENST00000429409 121 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RNU7-62P-201ENST00000458856 62 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RNU6-448P-201ENST00000517052 107 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 MIR4796-201ENST00000580742 81 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 MIR4712-201ENST00000583750 82 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 AC023932.2-201ENST00000603176 175 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 Y_RNA.56-201ENST00000362798 112 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 RNU6-957P-201ENST00000363652 99 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 Y_RNA.239-201ENST00000364444 113 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 RNU6-590P-201ENST00000365039 107 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 Y_RNA.330-201ENST00000365230 109 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 RNU6-811P-201ENST00000384069 107 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 RNU6-364P-201ENST00000384387 107 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 Y_RNA.536-201ENST00000384621 113 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 MIR329-2-201ENST00000385029 84 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 SNORD41-201ENST00000386967 70 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 RNU6-129P-201ENST00000391022 107 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 Y_RNA.588-201ENST00000391254 102 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 RNU6-1052P-201ENST00000411398 104 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 AC092628.1-201ENST00000436250 252 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 RNU6-523P-201ENST00000516304 54 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 RNU6-70P-201ENST00000516438 60 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 MIR2115-201ENST00000516657 100 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 RNU6-719P-201ENST00000516671 104 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 MIR3675-201ENST00000583661 73 ntBASIC0.68□□□□□ -2.3
COL4A4P53420 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
COL4A4P53420 AC023934.1-201ENST00000574529 2389 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 MIR26B-201ENST00000362251 77 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 MIRLET7A1-201ENST00000362295 80 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 RNA5SP48-201ENST00000363969 126 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 RNU6-681P-201ENST00000364012 104 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 SNORA25.8-201ENST00000364831 128 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 SNORD26-201ENST00000384147 75 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 MIR889-201ENST00000401280 79 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 Y_RNA.596-201ENST00000410462 109 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 RNU7-56P-201ENST00000458744 62 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 snoU13.9-201ENST00000458927 103 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 RNU6-1015P-201ENST00000517121 99 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 AC138869.1-201ENST00000568623 124 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 MIR548H5-201ENST00000580314 60 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 MIR6866-201ENST00000638146 69 ntBASIC0.67□□□□□ -2.3
COL4A4P53420 MIR377-201ENST00000362145 69 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 RNU5F-1-201ENST00000362507 117 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 RNU6-1260P-201ENST00000362944 107 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 RNU6-291P-201ENST00000384720 107 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 RNA5SP95-201ENST00000410319 137 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 RPS27P16-201ENST00000425758 201 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 RNU6-557P-201ENST00000516842 110 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.66□□□□□ -2.3
COL4A4P53420 AL512310.8-201ENST00000550183 120 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 AC015688.6-201ENST00000577737 104 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 MIR3937-201ENST00000580135 106 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 RNU7-10P-201ENST00000607194 63 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 MIR8063-201ENST00000621930 81 ntBASIC0.66□□□□□ -2.3
COL4A4P53420 Y_RNA.264-201ENST00000364665 102 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 Y_RNA.283-201ENST00000364798 112 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 SNORA2A-201ENST00000383885 135 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 Y_RNA.565-201ENST00000384719 101 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 RNU6-535P-201ENST00000384722 107 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 MIR146A-201ENST00000385201 99 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 MIR548U-201ENST00000390728 81 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 RNU6-380P-201ENST00000410207 107 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 Z95118.1-201ENST00000421372 247 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 RNU7-195P-201ENST00000458793 62 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 SNORD92-201ENST00000585078 85 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 MIR6082-201ENST00000613604 109 ntBASIC0.65□□□□□ -2.3
COL4A4P53420 RNU6-1051P-201ENST00000365471 102 ntBASIC0.65□□□□□ -2.31
COL4A4P53420 Y_RNA.363-201ENST00000365529 113 ntBASIC0.65□□□□□ -2.31
COL4A4P53420 Y_RNA.545-201ENST00000384652 105 ntBASIC0.65□□□□□ -2.31
COL4A4P53420 MIR520H-201ENST00000385126 88 ntBASIC0.65□□□□□ -2.31
COL4A4P53420 MIR618-201ENST00000385287 98 ntBASIC0.65□□□□□ -2.31
COL4A4P53420 RPS26P5-201ENST00000418544 335 ntBASIC0.65□□□□□ -2.31
COL4A4P53420 RNU7-156P-201ENST00000517214 74 ntBASIC0.65□□□□□ -2.31
COL4A4P53420 MIR4804-201ENST00000581683 73 ntBASIC0.65□□□□□ -2.31
COL4A4P53420 MIR103A2-201ENST00000362154 78 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 Y_RNA.12-201ENST00000362393 112 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 Y_RNA.42-201ENST00000362660 108 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 SNORD115-22-201ENST00000364456 82 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 RNU2-59P-201ENST00000410482 191 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 RNU7-90P-201ENST00000459216 62 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 SNORA62.5-201ENST00000516634 120 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 Y_RNA.697-201ENST00000516776 113 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 RNU6-902P-201ENST00000517212 91 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 MIR3134-201ENST00000579433 74 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 MIR4696-201ENST00000581431 70 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 MIR4802-201ENST00000581881 80 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.64□□□□□ -2.31
COL4A4P53420 MIR302D-201ENST00000362275 68 ntBASIC0.63□□□□□ -2.31
COL4A4P53420 SNORD114-15-201ENST00000364687 72 ntBASIC0.63□□□□□ -2.31
COL4A4P53420 RNU6-1187P-201ENST00000364771 110 ntBASIC0.63□□□□□ -2.31
COL4A4P53420 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
COL4A4P53420 SNORD77.2-201ENST00000391045 68 ntBASIC0.63□□□□□ -2.31
COL4A4P53420 AC015818.7-201ENST00000428754 109 ntBASIC0.63□□□□□ -2.31
COL4A4P53420 SNRPGP12-201ENST00000449481 213 ntBASIC0.63□□□□□ -2.31
COL4A4P53420 MIR3064-201ENST00000581130 66 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 219 ms