Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 MIR532-201ENST00000385025 91 ntBASIC0.97□□□□□ -2.25
SOX9P48436 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.97□□□□□ -2.25
SOX9P48436 RNA5SP94-201ENST00000516917 108 ntBASIC0.97□□□□□ -2.25
SOX9P48436 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.97□□□□□ -2.25
SOX9P48436 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
SOX9P48436 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
SOX9P48436 RNU4-32P-201ENST00000363404 141 ntBASIC0.96□□□□□ -2.26
SOX9P48436 SNORD101-201ENST00000384027 73 ntBASIC0.96□□□□□ -2.26
SOX9P48436 RNU6-811P-201ENST00000384069 107 ntBASIC0.96□□□□□ -2.26
SOX9P48436 RNA5SP227-201ENST00000516184 113 ntBASIC0.96□□□□□ -2.26
SOX9P48436 AC103810.9-201ENST00000606688 112 ntBASIC0.96□□□□□ -2.26
SOX9P48436 Y_RNA.239-201ENST00000364444 113 ntBASIC0.95□□□□□ -2.26
SOX9P48436 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
SOX9P48436 RNU6-402P-201ENST00000410678 103 ntBASIC0.95□□□□□ -2.26
SOX9P48436 RNU6-1057P-201ENST00000517162 102 ntBASIC0.95□□□□□ -2.26
SOX9P48436 IGLL4P-201ENST00000614590 133 ntBASIC0.95□□□□□ -2.26
SOX9P48436 U6.100-201ENST00000636230 99 ntBASIC0.95□□□□□ -2.26
SOX9P48436 Y_RNA.17-201ENST00000362433 111 ntBASIC0.94□□□□□ -2.26
SOX9P48436 MIR1236-201ENST00000408340 102 ntBASIC0.94□□□□□ -2.26
SOX9P48436 RNU7-74P-201ENST00000459104 62 ntBASIC0.94□□□□□ -2.26
SOX9P48436 RNU6-75P-201ENST00000515944 104 ntBASIC0.94□□□□□ -2.26
SOX9P48436 RNU6-664P-201ENST00000362381 107 ntBASIC0.93□□□□□ -2.26
SOX9P48436 Y_RNA.178-201ENST00000363832 102 ntBASIC0.93□□□□□ -2.26
SOX9P48436 RNU6-716P-201ENST00000365621 103 ntBASIC0.93□□□□□ -2.26
SOX9P48436 MIR193B-201ENST00000384907 83 ntBASIC0.93□□□□□ -2.26
SOX9P48436 Y_RNA.620-201ENST00000411009 88 ntBASIC0.93□□□□□ -2.26
SOX9P48436 MIR6857-201ENST00000613267 93 ntBASIC0.93□□□□□ -2.26
SOX9P48436 SNORD115-37-201ENST00000363768 82 ntBASIC0.92□□□□□ -2.26
SOX9P48436 RNA5SP268-201ENST00000516828 124 ntBASIC0.92□□□□□ -2.26
SOX9P48436 MIR1273G-201ENST00000577677 100 ntBASIC0.92□□□□□ -2.26
SOX9P48436 AC092634.7-201ENST00000621022 103 ntBASIC0.92□□□□□ -2.26
SOX9P48436 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.91□□□□□ -2.26
SOX9P48436 MIRLET7F1-201ENST00000362202 87 ntBASIC0.91□□□□□ -2.26
SOX9P48436 RNY1P1-201ENST00000364372 112 ntBASIC0.91□□□□□ -2.26
SOX9P48436 RNY1P8-201ENST00000383970 114 ntBASIC0.91□□□□□ -2.26
SOX9P48436 MIR519C-201ENST00000385053 87 ntBASIC0.91□□□□□ -2.26
SOX9P48436 MIR4714-201ENST00000580728 77 ntBASIC0.91□□□□□ -2.26
SOX9P48436 AC104996.3-201ENST00000590718 94 ntBASIC0.91□□□□□ -2.26
SOX9P48436 RNU6-633P-201ENST00000362612 103 ntBASIC0.9□□□□□ -2.27
SOX9P48436 MIR450A2-201ENST00000385022 100 ntBASIC0.9□□□□□ -2.27
SOX9P48436 RPL39P28-201ENST00000465655 155 ntBASIC0.9□□□□□ -2.27
SOX9P48436 MIR4696-201ENST00000581431 70 ntBASIC0.9□□□□□ -2.27
SOX9P48436 AL590095.2-201ENST00000604136 117 ntBASIC0.9□□□□□ -2.27
SOX9P48436 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.9□□□□□ -2.27
SOX9P48436 RNA5SP457-201ENST00000363657 124 ntBASIC0.89□□□□□ -2.27
SOX9P48436 SNORD71-201ENST00000411292 86 ntBASIC0.89□□□□□ -2.27
SOX9P48436 MIR3064-201ENST00000581130 66 ntBASIC0.89□□□□□ -2.27
SOX9P48436 MIR3920-201ENST00000581751 86 ntBASIC0.89□□□□□ -2.27
SOX9P48436 RNU6-726P-201ENST00000364680 107 ntBASIC0.88□□□□□ -2.27
SOX9P48436 RNU6-219P-201ENST00000364728 107 ntBASIC0.88□□□□□ -2.27
SOX9P48436 Y_RNA.491-201ENST00000384417 107 ntBASIC0.88□□□□□ -2.27
SOX9P48436 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
SOX9P48436 Y_RNA.593-201ENST00000410292 98 ntBASIC0.88□□□□□ -2.27
SOX9P48436 RNU6-935P-201ENST00000410371 100 ntBASIC0.88□□□□□ -2.27
SOX9P48436 RNU6-287P-201ENST00000516230 98 ntBASIC0.88□□□□□ -2.27
SOX9P48436 MTRNR2L2-201ENST00000604882 87 ntBASIC0.88□□□□□ -2.27
SOX9P48436 MIR6828-201ENST00000636181 60 ntBASIC0.88□□□□□ -2.27
SOX9P48436 SNORA36.1-201ENST00000363424 132 ntBASIC0.87□□□□□ -2.27
SOX9P48436 RNU6-509P-201ENST00000363519 107 ntBASIC0.87□□□□□ -2.27
SOX9P48436 Y_RNA.207-201ENST00000364142 106 ntBASIC0.87□□□□□ -2.27
SOX9P48436 SNORA8.2-201ENST00000384372 139 ntBASIC0.87□□□□□ -2.27
SOX9P48436 SNORD41.1-201ENST00000391000 69 ntBASIC0.87□□□□□ -2.27
SOX9P48436 MIR2113-201ENST00000459007 91 ntBASIC0.87□□□□□ -2.27
SOX9P48436 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.86□□□□□ -2.27
SOX9P48436 RNU6-132P-201ENST00000383863 107 ntBASIC0.86□□□□□ -2.27
SOX9P48436 RNU6-1126P-201ENST00000384002 107 ntBASIC0.86□□□□□ -2.27
SOX9P48436 RNU6-675P-201ENST00000384236 104 ntBASIC0.86□□□□□ -2.27
SOX9P48436 RNU6-267P-201ENST00000516714 103 ntBASIC0.86□□□□□ -2.27
SOX9P48436 MIR4653-201ENST00000585107 83 ntBASIC0.86□□□□□ -2.27
SOX9P48436 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
SOX9P48436 RNA5SP517-201ENST00000364724 117 ntBASIC0.85□□□□□ -2.27
SOX9P48436 MIR617-201ENST00000385030 97 ntBASIC0.85□□□□□ -2.27
SOX9P48436 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.85□□□□□ -2.27
SOX9P48436 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.85□□□□□ -2.27
SOX9P48436 Y_RNA.68-201ENST00000362881 102 ntBASIC0.84□□□□□ -2.27
SOX9P48436 Y_RNA.611-201ENST00000410682 108 ntBASIC0.84□□□□□ -2.27
SOX9P48436 SNORA40.8-201ENST00000411034 126 ntBASIC0.84□□□□□ -2.27
SOX9P48436 SNORA18.5-201ENST00000516616 101 ntBASIC0.84□□□□□ -2.27
SOX9P48436 MIR494-201ENST00000349529 81 ntBASIC0.83□□□□□ -2.28
SOX9P48436 Y_RNA.115-201ENST00000363272 98 ntBASIC0.83□□□□□ -2.28
SOX9P48436 SNORD115-27-201ENST00000364430 82 ntBASIC0.83□□□□□ -2.28
SOX9P48436 RNY4P3-201ENST00000365254 95 ntBASIC0.83□□□□□ -2.28
SOX9P48436 RNU6-820P-201ENST00000384273 107 ntBASIC0.83□□□□□ -2.28
SOX9P48436 MIR216B-201ENST00000390186 82 ntBASIC0.83□□□□□ -2.28
SOX9P48436 SNORD73B-201ENST00000364394 72 ntBASIC0.82□□□□□ -2.28
SOX9P48436 MIR451A-201ENST00000385059 72 ntBASIC0.82□□□□□ -2.28
SOX9P48436 MIR146A-201ENST00000385201 99 ntBASIC0.82□□□□□ -2.28
SOX9P48436 RNA5SP292-201ENST00000390974 118 ntBASIC0.82□□□□□ -2.28
SOX9P48436 MIR4796-201ENST00000580742 81 ntBASIC0.82□□□□□ -2.28
SOX9P48436 MIR7107-201ENST00000611489 80 ntBASIC0.82□□□□□ -2.28
SOX9P48436 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.82□□□□□ -2.28
SOX9P48436 MIR924-201ENST00000638017 53 ntBASIC0.82□□□□□ -2.28
SOX9P48436 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
SOX9P48436 SNORD114-23-201ENST00000363536 72 ntBASIC0.81□□□□□ -2.28
SOX9P48436 AC093729.1-201ENST00000513074 128 ntBASIC0.81□□□□□ -2.28
SOX9P48436 Y_RNA.681-201ENST00000516445 113 ntBASIC0.81□□□□□ -2.28
SOX9P48436 RNU6-762P-201ENST00000517107 102 ntBASIC0.81□□□□□ -2.28
SOX9P48436 SNORA25.18-201ENST00000607153 114 ntBASIC0.81□□□□□ -2.28
SOX9P48436 MIR6513-201ENST00000621188 64 ntBASIC0.81□□□□□ -2.28
SOX9P48436 MIR548BB-201ENST00000626714 66 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms