Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 SNORD113-5-201ENST00000607261 78 ntBASIC-3.73□□□□□ -3.01
CCDC88BA6NC98 AC013734.1-201ENST00000619329 111 ntBASIC-3.73□□□□□ -3.01
CCDC88BA6NC98 UBE2WP1-201ENST00000362030 340 ntBASIC-3.74□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.143-201ENST00000363520 106 ntBASIC-3.74□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.152-201ENST00000363578 100 ntBASIC-3.74□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.233-201ENST00000364407 101 ntBASIC-3.74□□□□□ -3.01
CCDC88BA6NC98 RNU6-332P-201ENST00000391193 108 ntBASIC-3.74□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.773-201ENST00000607168 90 ntBASIC-3.74□□□□□ -3.01
CCDC88BA6NC98 MTND5P26-201ENST00000426018 1752 ntBASIC-3.74□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.51-201ENST00000362725 102 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 RNU6-1272P-201ENST00000362776 107 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 RNU6-682P-201ENST00000363843 106 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.409-201ENST00000383990 98 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.509-201ENST00000384506 99 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 RNU7-6P-201ENST00000516845 62 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.812-201ENST00000610788 101 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.784-201ENST00000613803 101 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.787-201ENST00000616522 101 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.780-201ENST00000617336 101 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.801-201ENST00000619005 101 ntBASIC-3.75□□□□□ -3.01
CCDC88BA6NC98 SNORD38.1-201ENST00000363863 68 ntBASIC-3.76□□□□□ -3.01
CCDC88BA6NC98 RNU6-1051P-201ENST00000365471 102 ntBASIC-3.76□□□□□ -3.01
CCDC88BA6NC98 RNY3P10-201ENST00000384764 102 ntBASIC-3.76□□□□□ -3.01
CCDC88BA6NC98 AC107308.1-201ENST00000615897 301 ntBASIC-3.76□□□□□ -3.01
CCDC88BA6NC98 snoU18.1-201ENST00000629629 71 ntBASIC-3.76□□□□□ -3.01
CCDC88BA6NC98 Y_RNA.404-201ENST00000383978 102 ntBASIC-3.77□□□□□ -3.01
CCDC88BA6NC98 VN1R91P-201ENST00000594377 169 ntBASIC-3.77□□□□□ -3.01
CCDC88BA6NC98 SNORA7.5-201ENST00000410672 110 ntBASIC-3.78□□□□□ -3.01
CCDC88BA6NC98 RNY4P25-201ENST00000459254 96 ntBASIC-3.78□□□□□ -3.01
CCDC88BA6NC98 RNU6-307P-201ENST00000516743 106 ntBASIC-3.78□□□□□ -3.01
CCDC88BA6NC98 RNU6-1214P-201ENST00000363650 109 ntBASIC-3.79□□□□□ -3.02
CCDC88BA6NC98 RNU6-458P-201ENST00000384179 107 ntBASIC-3.79□□□□□ -3.02
CCDC88BA6NC98 RNU6-120P-201ENST00000516077 103 ntBASIC-3.79□□□□□ -3.02
CCDC88BA6NC98 RNU7-4P-201ENST00000516961 62 ntBASIC-3.79□□□□□ -3.02
CCDC88BA6NC98 RNU6-264P-201ENST00000517134 104 ntBASIC-3.79□□□□□ -3.02
CCDC88BA6NC98 U6.58-201ENST00000613107 107 ntBASIC-3.79□□□□□ -3.02
CCDC88BA6NC98 MIR6739-201ENST00000622461 75 ntBASIC-3.79□□□□□ -3.02
CCDC88BA6NC98 AC068137.3-201ENST00000639191 341 ntBASIC-3.79□□□□□ -3.02
CCDC88BA6NC98 RNU6-1109P-201ENST00000391187 107 ntBASIC-3.79□□□□□ -3.02
CCDC88BA6NC98 MIR1321-201ENST00000637766 79 ntBASIC-3.79□□□□□ -3.02
CCDC88BA6NC98 Y_RNA.296-201ENST00000364930 108 ntBASIC-3.8□□□□□ -3.02
CCDC88BA6NC98 MIR548U-201ENST00000390728 81 ntBASIC-3.8□□□□□ -3.02
CCDC88BA6NC98 AC096644.2-201ENST00000429278 159 ntBASIC-3.8□□□□□ -3.02
CCDC88BA6NC98 RNU6-62P-201ENST00000516526 102 ntBASIC-3.8□□□□□ -3.02
CCDC88BA6NC98 AC040904.1-201ENST00000590850 223 ntBASIC-3.8□□□□□ -3.02
CCDC88BA6NC98 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC-3.81□□□□□ -3.02
CCDC88BA6NC98 RNU6-911P-201ENST00000516523 104 ntBASIC-3.81□□□□□ -3.02
CCDC88BA6NC98 SNORD18C-201ENST00000362704 69 ntBASIC-3.82□□□□□ -3.02
CCDC88BA6NC98 Y_RNA.349-201ENST00000365406 102 ntBASIC-3.82□□□□□ -3.02
CCDC88BA6NC98 Y_RNA.394-201ENST00000383942 103 ntBASIC-3.82□□□□□ -3.02
CCDC88BA6NC98 RNU6-1013P-201ENST00000384180 107 ntBASIC-3.82□□□□□ -3.02
CCDC88BA6NC98 RNU6-662P-201ENST00000384253 104 ntBASIC-3.82□□□□□ -3.02
CCDC88BA6NC98 MIR616-201ENST00000385293 97 ntBASIC-3.82□□□□□ -3.02
CCDC88BA6NC98 RNA5SP236-201ENST00000516169 116 ntBASIC-3.82□□□□□ -3.02
CCDC88BA6NC98 Y_RNA.690-201ENST00000516603 95 ntBASIC-3.82□□□□□ -3.02
CCDC88BA6NC98 RNU6-1016P-201ENST00000516689 94 ntBASIC-3.82□□□□□ -3.02
CCDC88BA6NC98 Y_RNA.144-201ENST00000363521 113 ntBASIC-3.83□□□□□ -3.02
CCDC88BA6NC98 RNU6-1111P-201ENST00000391118 107 ntBASIC-3.83□□□□□ -3.02
CCDC88BA6NC98 MTND3P10-201ENST00000450967 341 ntBASIC-3.83□□□□□ -3.02
CCDC88BA6NC98 MIR4509-3-201ENST00000578671 94 ntBASIC-3.83□□□□□ -3.02
CCDC88BA6NC98 MIR4509-2-201ENST00000583920 94 ntBASIC-3.83□□□□□ -3.02
CCDC88BA6NC98 MIR4509-1-201ENST00000618224 94 ntBASIC-3.83□□□□□ -3.02
CCDC88BA6NC98 snoU2_19.4-201ENST00000364329 80 ntBASIC-3.84□□□□□ -3.02
CCDC88BA6NC98 RNU6-651P-201ENST00000411040 105 ntBASIC-3.84□□□□□ -3.02
CCDC88BA6NC98 MTATP6P21-201ENST00000440681 189 ntBASIC-3.84□□□□□ -3.02
CCDC88BA6NC98 MIRLET7A2-201ENST00000362105 72 ntBASIC-3.85□□□□□ -3.03
CCDC88BA6NC98 MIR513C-201ENST00000401352 84 ntBASIC-3.85□□□□□ -3.03
CCDC88BA6NC98 Y_RNA.682-201ENST00000516457 100 ntBASIC-3.85□□□□□ -3.03
CCDC88BA6NC98 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-3.86□□□□□ -3.03
CCDC88BA6NC98 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-3.86□□□□□ -3.03
CCDC88BA6NC98 Y_RNA.699-201ENST00000516803 93 ntBASIC-3.86□□□□□ -3.03
CCDC88BA6NC98 RNU6-832P-201ENST00000363319 107 ntBASIC-3.86□□□□□ -3.03
CCDC88BA6NC98 Y_RNA.314-201ENST00000365114 102 ntBASIC-3.86□□□□□ -3.03
CCDC88BA6NC98 U6.106-201ENST00000636360 105 ntBASIC-3.86□□□□□ -3.03
CCDC88BA6NC98 Y_RNA.217-201ENST00000364214 105 ntBASIC-3.87□□□□□ -3.03
CCDC88BA6NC98 SNORD50.2-201ENST00000365465 70 ntBASIC-3.87□□□□□ -3.03
CCDC88BA6NC98 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.87□□□□□ -3.03
CCDC88BA6NC98 RNU7-85P-201ENST00000458851 63 ntBASIC-3.87□□□□□ -3.03
CCDC88BA6NC98 Y_RNA.641-201ENST00000459414 105 ntBASIC-3.87□□□□□ -3.03
CCDC88BA6NC98 AL365265.1-201ENST00000621045 234 ntBASIC-3.87□□□□□ -3.03
CCDC88BA6NC98 MIR1255B1-201ENST00000636325 63 ntBASIC-3.87□□□□□ -3.03
CCDC88BA6NC98 MTATP6P29-201ENST00000415057 132 ntBASIC-3.88□□□□□ -3.03
CCDC88BA6NC98 MTND5P5-201ENST00000503764 376 ntBASIC-3.88□□□□□ -3.03
CCDC88BA6NC98 AC025521.1-201ENST00000621624 286 ntBASIC-3.88□□□□□ -3.03
CCDC88BA6NC98 AC021753.1-201ENST00000635724 168 ntBASIC-3.88□□□□□ -3.03
CCDC88BA6NC98 RNU6-987P-201ENST00000384759 104 ntBASIC-3.89□□□□□ -3.03
CCDC88BA6NC98 MIR509-1-201ENST00000385265 94 ntBASIC-3.89□□□□□ -3.03
CCDC88BA6NC98 MIR509-2-201ENST00000390724 91 ntBASIC-3.89□□□□□ -3.03
CCDC88BA6NC98 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-3.89□□□□□ -3.03
CCDC88BA6NC98 MIR3064-201ENST00000581130 66 ntBASIC-3.89□□□□□ -3.03
CCDC88BA6NC98 RNU6-1313P-201ENST00000362622 102 ntBASIC-3.9□□□□□ -3.03
CCDC88BA6NC98 Y_RNA.134-201ENST00000363435 105 ntBASIC-3.9□□□□□ -3.03
CCDC88BA6NC98 RNU6-593P-201ENST00000364716 112 ntBASIC-3.9□□□□□ -3.03
CCDC88BA6NC98 AL445567.1-201ENST00000439121 144 ntBASIC-3.9□□□□□ -3.03
CCDC88BA6NC98 RNU6-1089P-201ENST00000516473 104 ntBASIC-3.9□□□□□ -3.03
CCDC88BA6NC98 MIR4528-201ENST00000577763 90 ntBASIC-3.9□□□□□ -3.03
CCDC88BA6NC98 MIR3170-201ENST00000582699 77 ntBASIC-3.9□□□□□ -3.03
CCDC88BA6NC98 RNU4-43P-201ENST00000410628 137 ntBASIC-3.91□□□□□ -3.03
CCDC88BA6NC98 RNU4ATAC7P-201ENST00000516280 125 ntBASIC-3.91□□□□□ -3.03
CCDC88BA6NC98 RNU6-247P-201ENST00000362636 107 ntBASIC-3.92□□□□□ -3.04
Retrieved 100 of 98,524 protein–RNA pairs in 272.1 ms