Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AC068339.1-201ENST00000526965 141 ntBASIC0.31□□□□□ -2.36
USP44Q9H0E7 AL365222.1-201ENST00000614661 98 ntBASIC0.31□□□□□ -2.36
USP44Q9H0E7 MIR6755-201ENST00000619993 66 ntBASIC0.31□□□□□ -2.36
USP44Q9H0E7 AC067863.3-201ENST00000624172 122 ntBASIC0.31□□□□□ -2.36
USP44Q9H0E7 Y_RNA.374-201ENST00000365606 101 ntBASIC0.3□□□□□ -2.36
USP44Q9H0E7 RNU6-524P-201ENST00000384270 107 ntBASIC0.3□□□□□ -2.36
USP44Q9H0E7 MIR1197-201ENST00000408818 88 ntBASIC0.3□□□□□ -2.36
USP44Q9H0E7 AC008267.6-201ENST00000441664 139 ntBASIC0.3□□□□□ -2.36
USP44Q9H0E7 MIR3910-1-201ENST00000580936 111 ntBASIC0.3□□□□□ -2.36
USP44Q9H0E7 Y_RNA.30-201ENST00000362572 97 ntBASIC0.29□□□□□ -2.36
USP44Q9H0E7 U8.6-201ENST00000364939 135 ntBASIC0.29□□□□□ -2.36
USP44Q9H0E7 Y_RNA.377-201ENST00000365644 108 ntBASIC0.29□□□□□ -2.36
USP44Q9H0E7 SNORD41.1-201ENST00000391000 69 ntBASIC0.29□□□□□ -2.36
USP44Q9H0E7 MIR548L-201ENST00000408303 86 ntBASIC0.29□□□□□ -2.36
USP44Q9H0E7 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.29□□□□□ -2.36
USP44Q9H0E7 MIR4694-201ENST00000578534 80 ntBASIC0.29□□□□□ -2.36
USP44Q9H0E7 MIR4752-201ENST00000579672 72 ntBASIC0.29□□□□□ -2.36
USP44Q9H0E7 RNA5SP62-201ENST00000363457 110 ntBASIC0.28□□□□□ -2.36
USP44Q9H0E7 Y_RNA.423-201ENST00000384057 113 ntBASIC0.28□□□□□ -2.36
USP44Q9H0E7 AL603908.1-201ENST00000406098 201 ntBASIC0.28□□□□□ -2.36
USP44Q9H0E7 MIR5009-201ENST00000578736 100 ntBASIC0.28□□□□□ -2.36
USP44Q9H0E7 AC023932.2-201ENST00000603176 175 ntBASIC0.28□□□□□ -2.36
USP44Q9H0E7 RNU1-29P-201ENST00000606574 126 ntBASIC0.28□□□□□ -2.36
USP44Q9H0E7 AL162376.1-201ENST00000624117 175 ntBASIC0.28□□□□□ -2.36
USP44Q9H0E7 Y_RNA.57-201ENST00000362806 113 ntBASIC0.27□□□□□ -2.37
USP44Q9H0E7 RNU6-815P-201ENST00000384080 113 ntBASIC0.27□□□□□ -2.37
USP44Q9H0E7 RNU6-1254P-201ENST00000391266 104 ntBASIC0.27□□□□□ -2.37
USP44Q9H0E7 MIR4514-201ENST00000581410 57 ntBASIC0.27□□□□□ -2.37
USP44Q9H0E7 MIR4315-1-201ENST00000636800 73 ntBASIC0.27□□□□□ -2.37
USP44Q9H0E7 MIR4315-2-201ENST00000640925 73 ntBASIC0.27□□□□□ -2.37
USP44Q9H0E7 SNORD36A-201ENST00000362874 73 ntBASIC0.26□□□□□ -2.37
USP44Q9H0E7 RNY3P2-201ENST00000362918 102 ntBASIC0.26□□□□□ -2.37
USP44Q9H0E7 RNU6-832P-201ENST00000363319 107 ntBASIC0.26□□□□□ -2.37
USP44Q9H0E7 Y_RNA.281-201ENST00000364774 94 ntBASIC0.26□□□□□ -2.37
USP44Q9H0E7 Y_RNA.323-201ENST00000365157 109 ntBASIC0.26□□□□□ -2.37
USP44Q9H0E7 SNORD116-21-201ENST00000384507 92 ntBASIC0.26□□□□□ -2.37
USP44Q9H0E7 RNU6-1265P-201ENST00000516342 103 ntBASIC0.26□□□□□ -2.37
USP44Q9H0E7 MIR3613-201ENST00000579844 87 ntBASIC0.26□□□□□ -2.37
USP44Q9H0E7 RNA5SP257-201ENST00000363023 116 ntBASIC0.25□□□□□ -2.37
USP44Q9H0E7 RNU6-1163P-201ENST00000364516 107 ntBASIC0.25□□□□□ -2.37
USP44Q9H0E7 RNU6-880P-201ENST00000384526 107 ntBASIC0.25□□□□□ -2.37
USP44Q9H0E7 RNU6-269P-201ENST00000391077 97 ntBASIC0.25□□□□□ -2.37
USP44Q9H0E7 AC073261.1-201ENST00000429409 121 ntBASIC0.25□□□□□ -2.37
USP44Q9H0E7 MIR3920-201ENST00000581751 86 ntBASIC0.25□□□□□ -2.37
USP44Q9H0E7 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
USP44Q9H0E7 AC096720.1-201ENST00000604441 183 ntBASIC0.25□□□□□ -2.37
USP44Q9H0E7 AC132825.6-201ENST00000638861 357 ntBASIC0.25□□□□□ -2.37
USP44Q9H0E7 RNU6-22P-201ENST00000384355 107 ntBASIC0.24□□□□□ -2.37
USP44Q9H0E7 RNU6-1117P-201ENST00000384525 104 ntBASIC0.24□□□□□ -2.37
USP44Q9H0E7 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.24□□□□□ -2.37
USP44Q9H0E7 RNU6-1168P-201ENST00000390831 104 ntBASIC0.24□□□□□ -2.37
USP44Q9H0E7 RNU6-243P-201ENST00000391140 107 ntBASIC0.24□□□□□ -2.37
USP44Q9H0E7 RNU7-13P-201ENST00000516413 62 ntBASIC0.24□□□□□ -2.37
USP44Q9H0E7 AC069113.3-201ENST00000521019 150 ntBASIC0.24□□□□□ -2.37
USP44Q9H0E7 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.24□□□□□ -2.37
USP44Q9H0E7 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.23□□□□□ -2.37
USP44Q9H0E7 RNA5SP63-201ENST00000391225 112 ntBASIC0.23□□□□□ -2.37
USP44Q9H0E7 MIR6718-201ENST00000616153 80 ntBASIC0.23□□□□□ -2.37
USP44Q9H0E7 RNA5SP205-201ENST00000364653 136 ntBASIC0.22□□□□□ -2.37
USP44Q9H0E7 AC109327.2-201ENST00000448339 378 ntBASIC0.22□□□□□ -2.37
USP44Q9H0E7 RNU6-1232P-201ENST00000516299 86 ntBASIC0.22□□□□□ -2.37
USP44Q9H0E7 RNU6-62P-201ENST00000516526 102 ntBASIC0.22□□□□□ -2.37
USP44Q9H0E7 SNORA70.25-201ENST00000612741 95 ntBASIC0.22□□□□□ -2.37
USP44Q9H0E7 SNORA9.1-201ENST00000362412 131 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 SNORA2A-201ENST00000383885 135 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 RNU6-1014P-201ENST00000383940 103 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 RNU6-1144P-201ENST00000384247 104 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 RNU6-476P-201ENST00000384726 107 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 MIR760-201ENST00000390220 80 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 AL161932.1-201ENST00000437408 146 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.21□□□□□ -2.38
USP44Q9H0E7 Y_RNA.659-201ENST00000515994 113 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 Y_RNA.681-201ENST00000516445 113 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 AC141557.1-201ENST00000540982 400 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
USP44Q9H0E7 RNU6-1244P-201ENST00000363614 108 ntBASIC0.2□□□□□ -2.38
USP44Q9H0E7 Y_RNA.163-201ENST00000363702 113 ntBASIC0.2□□□□□ -2.38
USP44Q9H0E7 RNU6-1107P-201ENST00000364817 104 ntBASIC0.2□□□□□ -2.38
USP44Q9H0E7 MIR181B2-201ENST00000385004 89 ntBASIC0.2□□□□□ -2.38
USP44Q9H0E7 RNU6-412P-201ENST00000516434 106 ntBASIC0.2□□□□□ -2.38
USP44Q9H0E7 TRDV1-202ENST00000621643 102 ntBASIC0.2□□□□□ -2.38
USP44Q9H0E7 RNU6-1125P-201ENST00000363601 107 ntBASIC0.19□□□□□ -2.38
USP44Q9H0E7 SNORD113-1-201ENST00000365321 69 ntBASIC0.19□□□□□ -2.38
USP44Q9H0E7 RNU6-480P-201ENST00000384332 107 ntBASIC0.19□□□□□ -2.38
USP44Q9H0E7 RNU6-1064P-201ENST00000410626 104 ntBASIC0.19□□□□□ -2.38
USP44Q9H0E7 RNU6-479P-201ENST00000516348 105 ntBASIC0.19□□□□□ -2.38
USP44Q9H0E7 MIR5706-201ENST00000579841 80 ntBASIC0.19□□□□□ -2.38
USP44Q9H0E7 MIR548AG2-201ENST00000581228 64 ntBASIC0.19□□□□□ -2.38
USP44Q9H0E7 RNU6-86P-201ENST00000606534 107 ntBASIC0.19□□□□□ -2.38
USP44Q9H0E7 U7.6-201ENST00000610841 64 ntBASIC0.19□□□□□ -2.38
USP44Q9H0E7 MIR2909-201ENST00000617113 69 ntBASIC0.19□□□□□ -2.38
USP44Q9H0E7 RNU6-957P-201ENST00000363652 99 ntBASIC0.18□□□□□ -2.38
USP44Q9H0E7 RNA5SP128-201ENST00000365305 116 ntBASIC0.18□□□□□ -2.38
USP44Q9H0E7 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.18□□□□□ -2.38
USP44Q9H0E7 uc_338.28-201ENST00000612082 187 ntBASIC0.18□□□□□ -2.38
USP44Q9H0E7 AC073869.9-201ENST00000641610 120 ntBASIC0.18□□□□□ -2.38
USP44Q9H0E7 Y_RNA.78-201ENST00000362970 110 ntBASIC0.17□□□□□ -2.38
USP44Q9H0E7 SNORD115-44-201ENST00000365391 82 ntBASIC0.17□□□□□ -2.38
USP44Q9H0E7 RNU6-1154P-201ENST00000391001 104 ntBASIC0.17□□□□□ -2.38
USP44Q9H0E7 MIR1295A-201ENST00000408463 79 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 210.9 ms