Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 RNU4-53P-201ENST00000410828 140 ntBASIC2.04□□□□□ -2.08
RETREG3Q86VR2 RNU6-752P-201ENST00000516376 102 ntBASIC2.04□□□□□ -2.08
RETREG3Q86VR2 SNORA31.14-201ENST00000516728 116 ntBASIC2.04□□□□□ -2.08
RETREG3Q86VR2 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.04□□□□□ -2.08
RETREG3Q86VR2 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
RETREG3Q86VR2 SNORD115-24-201ENST00000363528 82 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 Y_RNA.174-201ENST00000363781 105 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 Y_RNA.258-201ENST00000364613 105 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 Y_RNA.443-201ENST00000384135 111 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 SNORA70B-201ENST00000384210 135 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 SNORA48.3-201ENST00000391081 134 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 RNU6ATAC33P-201ENST00000408647 126 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 RNA5SP489-201ENST00000410986 109 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 SNORD79.1-201ENST00000516069 84 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 RNA5SP200-201ENST00000516360 103 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 MIR3945-201ENST00000581853 98 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 AL359821.1-201ENST00000605519 182 ntBASIC2.03□□□□□ -2.08
RETREG3Q86VR2 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
RETREG3Q86VR2 RNA5SP289-201ENST00000362332 137 ntBASIC2.02□□□□□ -2.09
RETREG3Q86VR2 SNORA25.4-201ENST00000363666 124 ntBASIC2.02□□□□□ -2.09
RETREG3Q86VR2 AC244098.3-201ENST00000424803 96 ntBASIC2.02□□□□□ -2.09
RETREG3Q86VR2 AL356320.1-201ENST00000429616 163 ntBASIC2.02□□□□□ -2.09
RETREG3Q86VR2 AC067940.1-201ENST00000458411 300 ntBASIC2.02□□□□□ -2.09
RETREG3Q86VR2 RNU6-902P-201ENST00000517212 91 ntBASIC2.02□□□□□ -2.09
RETREG3Q86VR2 uc_338.16-201ENST00000621804 95 ntBASIC2.02□□□□□ -2.09
RETREG3Q86VR2 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
RETREG3Q86VR2 RNU6ATAC8P-201ENST00000408460 126 ntBASIC2.01□□□□□ -2.09
RETREG3Q86VR2 RNA5SP425-201ENST00000410336 112 ntBASIC2.01□□□□□ -2.09
RETREG3Q86VR2 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.01□□□□□ -2.09
RETREG3Q86VR2 AL096840.1-201ENST00000603287 93 ntBASIC2.01□□□□□ -2.09
RETREG3Q86VR2 uc_338.20-201ENST00000621563 178 ntBASIC2.01□□□□□ -2.09
RETREG3Q86VR2 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
RETREG3Q86VR2 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
RETREG3Q86VR2 RNU6-1216P-201ENST00000362590 107 ntBASIC2□□□□□ -2.09
RETREG3Q86VR2 SNORD113.1-201ENST00000363280 73 ntBASIC2□□□□□ -2.09
RETREG3Q86VR2 RNA5SP403-201ENST00000363598 108 ntBASIC1.99□□□□□ -2.09
RETREG3Q86VR2 RNU6-1126P-201ENST00000384002 107 ntBASIC1.99□□□□□ -2.09
RETREG3Q86VR2 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
RETREG3Q86VR2 AL691482.2-201ENST00000457453 84 ntBASIC1.99□□□□□ -2.09
RETREG3Q86VR2 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.99□□□□□ -2.09
RETREG3Q86VR2 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
RETREG3Q86VR2 MIR216B-201ENST00000390186 82 ntBASIC1.98□□□□□ -2.09
RETREG3Q86VR2 RNU7-104P-201ENST00000459398 79 ntBASIC1.98□□□□□ -2.09
RETREG3Q86VR2 RNU7-161P-201ENST00000517289 62 ntBASIC1.98□□□□□ -2.09
RETREG3Q86VR2 MIR4781-201ENST00000585250 76 ntBASIC1.98□□□□□ -2.09
RETREG3Q86VR2 MIR6132-201ENST00000622083 109 ntBASIC1.98□□□□□ -2.09
RETREG3Q86VR2 SNORD75.2-201ENST00000408784 58 ntBASIC1.97□□□□□ -2.09
RETREG3Q86VR2 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.97□□□□□ -2.09
RETREG3Q86VR2 RNA5SP364-201ENST00000516938 78 ntBASIC1.97□□□□□ -2.09
RETREG3Q86VR2 SNORA70.22-201ENST00000517160 124 ntBASIC1.97□□□□□ -2.09
RETREG3Q86VR2 MIR548AG2-201ENST00000581228 64 ntBASIC1.97□□□□□ -2.09
RETREG3Q86VR2 MIR3920-201ENST00000581751 86 ntBASIC1.97□□□□□ -2.09
RETREG3Q86VR2 SNORA3.2-201ENST00000408221 125 ntBASIC1.96□□□□□ -2.1
RETREG3Q86VR2 MIR1827-201ENST00000408549 66 ntBASIC1.96□□□□□ -2.1
RETREG3Q86VR2 MIR6873-201ENST00000622788 63 ntBASIC1.96□□□□□ -2.1
RETREG3Q86VR2 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.95□□□□□ -2.1
RETREG3Q86VR2 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.95□□□□□ -2.1
RETREG3Q86VR2 RMST_2.1-201ENST00000617263 136 ntBASIC1.95□□□□□ -2.1
RETREG3Q86VR2 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.95□□□□□ -2.1
RETREG3Q86VR2 SNORD116-24-201ENST00000384549 92 ntBASIC1.94□□□□□ -2.1
RETREG3Q86VR2 MIR9-2-201ENST00000384838 87 ntBASIC1.94□□□□□ -2.1
RETREG3Q86VR2 MIR617-201ENST00000385030 97 ntBASIC1.94□□□□□ -2.1
RETREG3Q86VR2 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.94□□□□□ -2.1
RETREG3Q86VR2 MIR222-201ENST00000384992 110 ntBASIC1.93□□□□□ -2.1
RETREG3Q86VR2 MIR1261-201ENST00000408659 82 ntBASIC1.93□□□□□ -2.1
RETREG3Q86VR2 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
RETREG3Q86VR2 MIR1273D-201ENST00000577266 86 ntBASIC1.93□□□□□ -2.1
RETREG3Q86VR2 AC104984.5-201ENST00000586878 94 ntBASIC1.93□□□□□ -2.1
RETREG3Q86VR2 AL136317.1-201ENST00000612653 226 ntBASIC1.93□□□□□ -2.1
RETREG3Q86VR2 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
RETREG3Q86VR2 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
RETREG3Q86VR2 SUMO2P12-201ENST00000405924 140 ntBASIC1.92□□□□□ -2.1
RETREG3Q86VR2 RNU7-24P-201ENST00000458867 62 ntBASIC1.92□□□□□ -2.1
RETREG3Q86VR2 MIR4648-201ENST00000580107 72 ntBASIC1.92□□□□□ -2.1
RETREG3Q86VR2 AC067863.3-201ENST00000624172 122 ntBASIC1.92□□□□□ -2.1
RETREG3Q86VR2 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.91□□□□□ -2.1
RETREG3Q86VR2 RNU6-495P-201ENST00000362995 107 ntBASIC1.91□□□□□ -2.1
RETREG3Q86VR2 SNORD12-201ENST00000391002 90 ntBASIC1.91□□□□□ -2.1
RETREG3Q86VR2 RN7SKP223-201ENST00000410582 62 ntBASIC1.91□□□□□ -2.1
RETREG3Q86VR2 RNU1-123P-201ENST00000458950 160 ntBASIC1.91□□□□□ -2.1
RETREG3Q86VR2 NAMPTP3-201ENST00000569273 224 ntBASIC1.91□□□□□ -2.1
RETREG3Q86VR2 AC012493.3-201ENST00000604494 112 ntBASIC1.91□□□□□ -2.1
RETREG3Q86VR2 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.91□□□□□ -2.1
RETREG3Q86VR2 RNA5SP117-201ENST00000365294 118 ntBASIC1.9□□□□□ -2.11
RETREG3Q86VR2 Y_RNA.783-201ENST00000613546 102 ntBASIC1.9□□□□□ -2.11
RETREG3Q86VR2 MIR6509-201ENST00000614603 85 ntBASIC1.9□□□□□ -2.11
RETREG3Q86VR2 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
RETREG3Q86VR2 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
RETREG3Q86VR2 RNU6-1039P-201ENST00000383931 107 ntBASIC1.89□□□□□ -2.11
RETREG3Q86VR2 MIR519E-201ENST00000385075 84 ntBASIC1.89□□□□□ -2.11
RETREG3Q86VR2 MIR6715A-201ENST00000615929 79 ntBASIC1.89□□□□□ -2.11
RETREG3Q86VR2 AC103706.3-201ENST00000636297 85 ntBASIC1.89□□□□□ -2.11
RETREG3Q86VR2 snoU13.26-201ENST00000459452 105 ntBASIC1.88□□□□□ -2.11
RETREG3Q86VR2 MIR4511-201ENST00000582784 87 ntBASIC1.88□□□□□ -2.11
RETREG3Q86VR2 MIR548O2-201ENST00000616090 70 ntBASIC1.88□□□□□ -2.11
RETREG3Q86VR2 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
RETREG3Q86VR2 MIR644A-201ENST00000385262 94 ntBASIC1.87□□□□□ -2.11
RETREG3Q86VR2 AC002350.1-201ENST00000490759 375 ntBASIC1.87□□□□□ -2.11
RETREG3Q86VR2 RNU6-982P-201ENST00000516216 102 ntBASIC1.87□□□□□ -2.11
RETREG3Q86VR2 RNU6-469P-201ENST00000516253 101 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 210 ms