Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNU7-10P-201ENST00000607194 63 ntBASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
HIF3AQ9Y2N7 Y_RNA.56-201ENST00000362798 112 ntBASIC1.83□□□□□ -2.12
HIF3AQ9Y2N7 RNU6-1260P-201ENST00000362944 107 ntBASIC1.83□□□□□ -2.12
HIF3AQ9Y2N7 RNU6-1241P-201ENST00000384536 107 ntBASIC1.83□□□□□ -2.12
HIF3AQ9Y2N7 SNORD30.1-201ENST00000391309 70 ntBASIC1.83□□□□□ -2.12
HIF3AQ9Y2N7 MIR1273D-201ENST00000577266 86 ntBASIC1.83□□□□□ -2.12
HIF3AQ9Y2N7 MIR4648-201ENST00000580107 72 ntBASIC1.83□□□□□ -2.12
HIF3AQ9Y2N7 MIR4696-201ENST00000581431 70 ntBASIC1.83□□□□□ -2.12
HIF3AQ9Y2N7 MIR4524B-201ENST00000581569 115 ntBASIC1.83□□□□□ -2.12
HIF3AQ9Y2N7 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.83□□□□□ -2.12
HIF3AQ9Y2N7 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
HIF3AQ9Y2N7 RNU6-664P-201ENST00000362381 107 ntBASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 RNU6-934P-201ENST00000365154 107 ntBASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 RNU6-649P-201ENST00000384463 107 ntBASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 MIR154-201ENST00000385243 84 ntBASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 RNU1-78P-201ENST00000391248 165 ntBASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 RNU6-1052P-201ENST00000411398 104 ntBASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 RPS27P16-201ENST00000425758 201 ntBASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 RNU6-719P-201ENST00000516671 104 ntBASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.82□□□□□ -2.12
HIF3AQ9Y2N7 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
HIF3AQ9Y2N7 RNU6-154P-201ENST00000384306 106 ntBASIC1.81□□□□□ -2.12
HIF3AQ9Y2N7 MIR599-201ENST00000385069 95 ntBASIC1.81□□□□□ -2.12
HIF3AQ9Y2N7 MIR519A1-201ENST00000385257 85 ntBASIC1.81□□□□□ -2.12
HIF3AQ9Y2N7 RN7SKP223-201ENST00000410582 62 ntBASIC1.81□□□□□ -2.12
HIF3AQ9Y2N7 AC048334.1-201ENST00000477975 159 ntBASIC1.81□□□□□ -2.12
HIF3AQ9Y2N7 MIR5089-201ENST00000580047 84 ntBASIC1.81□□□□□ -2.12
HIF3AQ9Y2N7 MIR4422-201ENST00000581938 83 ntBASIC1.81□□□□□ -2.12
HIF3AQ9Y2N7 MIR219B-201ENST00000637023 88 ntBASIC1.81□□□□□ -2.12
HIF3AQ9Y2N7 Y_RNA.42-201ENST00000362660 108 ntBASIC1.8□□□□□ -2.12
HIF3AQ9Y2N7 RNU6-540P-201ENST00000384622 101 ntBASIC1.8□□□□□ -2.12
HIF3AQ9Y2N7 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
HIF3AQ9Y2N7 AC097635.1-201ENST00000450678 155 ntBASIC1.8□□□□□ -2.12
HIF3AQ9Y2N7 snoU13.15-201ENST00000459407 104 ntBASIC1.8□□□□□ -2.12
HIF3AQ9Y2N7 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.8□□□□□ -2.12
HIF3AQ9Y2N7 AC023827.1-201ENST00000569247 97 ntBASIC1.8□□□□□ -2.12
HIF3AQ9Y2N7 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HIF3AQ9Y2N7 RNY4P3-201ENST00000365254 95 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 SNORD115-31-201ENST00000365318 82 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 SNORA64-201ENST00000384674 134 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 MIR125B2-201ENST00000385128 89 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 SNORA75.2-201ENST00000391138 150 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 SNORA75.3-201ENST00000391231 150 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 MIR934-201ENST00000401241 83 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 RN7SKP88-201ENST00000516847 250 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 AC036111.3-201ENST00000526389 112 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 7SK.8-201ENST00000612110 250 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 7SK.11-201ENST00000615477 250 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 7SK.13-201ENST00000622040 250 ntBASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
HIF3AQ9Y2N7 Y_RNA.36-201ENST00000362602 112 ntBASIC1.78□□□□□ -2.12
HIF3AQ9Y2N7 RNU6-340P-201ENST00000364005 107 ntBASIC1.78□□□□□ -2.12
HIF3AQ9Y2N7 RNA5SP245-201ENST00000364239 121 ntBASIC1.78□□□□□ -2.12
HIF3AQ9Y2N7 SNORD113.3-201ENST00000364630 78 ntBASIC1.78□□□□□ -2.12
HIF3AQ9Y2N7 RNU7-40P-201ENST00000516397 64 ntBASIC1.78□□□□□ -2.12
HIF3AQ9Y2N7 RNU7-156P-201ENST00000517214 74 ntBASIC1.78□□□□□ -2.12
HIF3AQ9Y2N7 MIR4769-201ENST00000584126 77 ntBASIC1.78□□□□□ -2.12
HIF3AQ9Y2N7 Y_RNA.783-201ENST00000613546 102 ntBASIC1.78□□□□□ -2.12
HIF3AQ9Y2N7 ZNF355P-201ENST00000427301 3216 ntBASIC1.77□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-291P-201ENST00000384720 107 ntBASIC1.77□□□□□ -2.13
HIF3AQ9Y2N7 MIR451A-201ENST00000385059 72 ntBASIC1.77□□□□□ -2.13
HIF3AQ9Y2N7 MIR1265-201ENST00000408444 86 ntBASIC1.77□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-237P-201ENST00000515985 71 ntBASIC1.77□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-765P-201ENST00000516916 99 ntBASIC1.77□□□□□ -2.13
HIF3AQ9Y2N7 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.77□□□□□ -2.13
HIF3AQ9Y2N7 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HIF3AQ9Y2N7 Y_RNA.386-201ENST00000383913 105 ntBASIC1.76□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-535P-201ENST00000384722 107 ntBASIC1.76□□□□□ -2.13
HIF3AQ9Y2N7 MIR942-201ENST00000401111 86 ntBASIC1.76□□□□□ -2.13
HIF3AQ9Y2N7 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.76□□□□□ -2.13
HIF3AQ9Y2N7 SNORA31.2-201ENST00000516019 134 ntBASIC1.76□□□□□ -2.13
HIF3AQ9Y2N7 AC138907.6-201ENST00000568401 126 ntBASIC1.76□□□□□ -2.13
HIF3AQ9Y2N7 AC138869.1-201ENST00000568623 124 ntBASIC1.76□□□□□ -2.13
HIF3AQ9Y2N7 AL645939.4-201ENST00000604495 135 ntBASIC1.76□□□□□ -2.13
HIF3AQ9Y2N7 uc_338.20-201ENST00000621563 178 ntBASIC1.76□□□□□ -2.13
HIF3AQ9Y2N7 MIR337-201ENST00000362281 93 ntBASIC1.75□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-364P-201ENST00000384387 107 ntBASIC1.75□□□□□ -2.13
HIF3AQ9Y2N7 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-663P-201ENST00000391105 106 ntBASIC1.75□□□□□ -2.13
HIF3AQ9Y2N7 SUMO2P12-201ENST00000405924 140 ntBASIC1.75□□□□□ -2.13
HIF3AQ9Y2N7 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.75□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-935P-201ENST00000410371 100 ntBASIC1.75□□□□□ -2.13
HIF3AQ9Y2N7 AC108210.2-201ENST00000503681 201 ntBASIC1.75□□□□□ -2.13
HIF3AQ9Y2N7 MIR4676-201ENST00000583078 72 ntBASIC1.75□□□□□ -2.13
HIF3AQ9Y2N7 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.75□□□□□ -2.13
HIF3AQ9Y2N7 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
HIF3AQ9Y2N7 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.74□□□□□ -2.13
HIF3AQ9Y2N7 MIR2113-201ENST00000459007 91 ntBASIC1.74□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-902P-201ENST00000517212 91 ntBASIC1.74□□□□□ -2.13
HIF3AQ9Y2N7 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.74□□□□□ -2.13
HIF3AQ9Y2N7 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.74□□□□□ -2.13
HIF3AQ9Y2N7 U6.111-201ENST00000636093 83 ntBASIC1.74□□□□□ -2.13
HIF3AQ9Y2N7 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HIF3AQ9Y2N7 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.73□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-824P-201ENST00000363724 104 ntBASIC1.73□□□□□ -2.13
HIF3AQ9Y2N7 Y_RNA.363-201ENST00000365529 113 ntBASIC1.73□□□□□ -2.13
HIF3AQ9Y2N7 SNORD111-201ENST00000408139 94 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 288.5 ms