Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR3945-201ENST00000581853 98 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 MIR3140-201ENST00000583685 90 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 AC013244.2-201ENST00000603396 103 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 GHRLOS.1-201ENST00000610995 70 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 MIR377-201ENST00000362145 69 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR101-2-201ENST00000362195 79 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU6-664P-201ENST00000362381 107 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU6-1260P-201ENST00000362944 107 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU6-654P-201ENST00000364373 107 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU6-997P-201ENST00000384725 107 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR9-2-201ENST00000384838 87 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR1185-1-201ENST00000408598 86 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU4-37P-201ENST00000410214 84 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNA5SP95-201ENST00000410319 137 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 AC093423.1-201ENST00000440817 142 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 snoU13.9-201ENST00000458927 103 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 Y_RNA.809-201ENST00000516058 95 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU6-250P-201ENST00000516958 103 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR4696-201ENST00000581431 70 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR3675-201ENST00000583661 73 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR934-201ENST00000401241 83 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 Y_RNA.606-201ENST00000410579 103 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 MIR18B-201ENST00000454574 71 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 MIR2113-201ENST00000459007 91 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 RNU6-947P-201ENST00000516264 106 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 RNU6-295P-201ENST00000516901 104 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 MIR548H5-201ENST00000580314 60 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 MIR6845-201ENST00000613182 61 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 U6.100-201ENST00000636230 99 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 RNU6-681P-201ENST00000364012 104 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 RNU6-580P-201ENST00000365159 107 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 SNORD101-201ENST00000384027 73 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 RNU6-630P-201ENST00000391258 106 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 MIR502-201ENST00000606349 86 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 RNU7-10P-201ENST00000607194 63 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 MIR337-201ENST00000362281 93 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 SNORD45A-201ENST00000384512 84 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 AC092628.1-201ENST00000436250 252 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 snoU13.15-201ENST00000459407 104 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 AL133373.1-201ENST00000497098 94 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC39Q9UFE4 MIR103A2-201ENST00000362154 78 ntBASIC1.87□□□□□ -2.11
CCDC39Q9UFE4 Y_RNA.56-201ENST00000362798 112 ntBASIC1.87□□□□□ -2.11
CCDC39Q9UFE4 RNU6-895P-201ENST00000384125 103 ntBASIC1.87□□□□□ -2.11
CCDC39Q9UFE4 MTRNR2L2-201ENST00000604882 87 ntBASIC1.87□□□□□ -2.11
CCDC39Q9UFE4 Y_RNA.13-201ENST00000362403 112 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 RNA5SP264-201ENST00000363115 107 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 SNORA25.4-201ENST00000363666 124 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 RNU6-1054P-201ENST00000411293 104 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 AC097510.1-201ENST00000510945 133 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 AC015688.6-201ENST00000577737 104 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 SNORA77B-201ENST00000578179 125 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 MIR8081-201ENST00000611533 95 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 U6.81-201ENST00000612550 106 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 SNORD45.1-201ENST00000363181 77 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 RNU6-824P-201ENST00000363724 104 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 SNORD115-22-201ENST00000364456 82 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 Y_RNA.443-201ENST00000384135 111 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 SNORA24B-201ENST00000384176 131 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 RNU7-185P-201ENST00000459215 60 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 Y_RNA.697-201ENST00000516776 113 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 MIR3124-201ENST00000582636 67 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 MIR6082-201ENST00000613604 109 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 AC023934.1-201ENST00000574529 2389 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 RNU6-499P-201ENST00000365615 107 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 SNORA26.9-201ENST00000391322 122 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 MIR1261-201ENST00000408659 82 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 snoU13.21-201ENST00000459368 105 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 SNORA25.15-201ENST00000516487 89 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 RNU6-881P-201ENST00000516813 102 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 MIR4255-201ENST00000579351 72 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 MIR4285-201ENST00000581001 85 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 MIR8053-201ENST00000613344 75 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 MIR8063-201ENST00000621930 81 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
CCDC39Q9UFE4 RNU6-1052P-201ENST00000411398 104 ntBASIC1.83□□□□□ -2.12
CCDC39Q9UFE4 AC097635.1-201ENST00000450678 155 ntBASIC1.83□□□□□ -2.12
CCDC39Q9UFE4 snoU13.26-201ENST00000459452 105 ntBASIC1.83□□□□□ -2.12
CCDC39Q9UFE4 RNU6-719P-201ENST00000516671 104 ntBASIC1.83□□□□□ -2.12
CCDC39Q9UFE4 MIR4422-201ENST00000581938 83 ntBASIC1.83□□□□□ -2.12
CCDC39Q9UFE4 SNORD116-24-201ENST00000384549 92 ntBASIC1.82□□□□□ -2.12
CCDC39Q9UFE4 RNU6-935P-201ENST00000410371 100 ntBASIC1.82□□□□□ -2.12
CCDC39Q9UFE4 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.82□□□□□ -2.12
CCDC39Q9UFE4 MIR451A-201ENST00000385059 72 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 MIR599-201ENST00000385069 95 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 RNU1-78P-201ENST00000391248 165 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 MIR1257-201ENST00000408490 117 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 RNU6-765P-201ENST00000516916 99 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 MIR6715A-201ENST00000615929 79 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 264.3 ms