Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 AL606490.4-201ENST00000423117 127 ntBASIC0.71□□□□□ -2.3
MMP3P08254 RNU6-1290P-201ENST00000362957 109 ntBASIC0.7□□□□□ -2.3
MMP3P08254 Y_RNA.115-201ENST00000363272 98 ntBASIC0.7□□□□□ -2.3
MMP3P08254 RNU6-1201P-201ENST00000384227 107 ntBASIC0.7□□□□□ -2.3
MMP3P08254 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.7□□□□□ -2.3
MMP3P08254 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.7□□□□□ -2.3
MMP3P08254 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.7□□□□□ -2.3
MMP3P08254 RNU6-1006P-201ENST00000516998 103 ntBASIC0.7□□□□□ -2.3
MMP3P08254 uc_338.16-201ENST00000621804 95 ntBASIC0.7□□□□□ -2.3
MMP3P08254 MIR924-201ENST00000638017 53 ntBASIC0.7□□□□□ -2.3
MMP3P08254 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
MMP3P08254 Y_RNA.281-201ENST00000364774 94 ntBASIC0.69□□□□□ -2.3
MMP3P08254 RNU6-1107P-201ENST00000364817 104 ntBASIC0.69□□□□□ -2.3
MMP3P08254 MIR577-201ENST00000385196 96 ntBASIC0.69□□□□□ -2.3
MMP3P08254 SPINT5P-201ENST00000448174 155 ntBASIC0.69□□□□□ -2.3
MMP3P08254 RNA5SP330-201ENST00000517096 96 ntBASIC0.69□□□□□ -2.3
MMP3P08254 MIR5009-201ENST00000578736 100 ntBASIC0.69□□□□□ -2.3
MMP3P08254 AC243829.3-201ENST00000622177 108 ntBASIC0.69□□□□□ -2.3
MMP3P08254 RNA5SP499-201ENST00000363982 119 ntBASIC0.68□□□□□ -2.3
MMP3P08254 RNU6-1081P-201ENST00000384537 107 ntBASIC0.68□□□□□ -2.3
MMP3P08254 MTND5P40-201ENST00000559945 246 ntBASIC0.68□□□□□ -2.3
MMP3P08254 MIR3678-201ENST00000578455 94 ntBASIC0.68□□□□□ -2.3
MMP3P08254 SNORA19.1-201ENST00000410656 129 ntBASIC0.67□□□□□ -2.3
MMP3P08254 SNRPGP12-201ENST00000449481 213 ntBASIC0.67□□□□□ -2.3
MMP3P08254 TRAJ51-201ENST00000504127 63 ntBASIC0.67□□□□□ -2.3
MMP3P08254 MIR3613-201ENST00000579844 87 ntBASIC0.67□□□□□ -2.3
MMP3P08254 AL442128.1-201ENST00000615151 90 ntBASIC0.67□□□□□ -2.3
MMP3P08254 Y_RNA.49-201ENST00000362714 112 ntBASIC0.66□□□□□ -2.3
MMP3P08254 Y_RNA.56-201ENST00000362798 112 ntBASIC0.66□□□□□ -2.3
MMP3P08254 Y_RNA.258-201ENST00000364613 105 ntBASIC0.66□□□□□ -2.3
MMP3P08254 Y_RNA.291-201ENST00000364886 113 ntBASIC0.66□□□□□ -2.3
MMP3P08254 RNU6-1014P-201ENST00000383940 103 ntBASIC0.66□□□□□ -2.3
MMP3P08254 RNU6-110P-201ENST00000384508 104 ntBASIC0.66□□□□□ -2.3
MMP3P08254 MIR140-201ENST00000385282 100 ntBASIC0.66□□□□□ -2.3
MMP3P08254 AC098934.3-201ENST00000430450 190 ntBASIC0.66□□□□□ -2.3
MMP3P08254 AC092628.1-201ENST00000436250 252 ntBASIC0.66□□□□□ -2.3
MMP3P08254 RNU6-850P-201ENST00000516934 103 ntBASIC0.66□□□□□ -2.3
MMP3P08254 AC141557.1-201ENST00000540982 400 ntBASIC0.66□□□□□ -2.3
MMP3P08254 SNORD38.1-201ENST00000363863 68 ntBASIC0.65□□□□□ -2.31
MMP3P08254 Y_RNA.273-201ENST00000364703 102 ntBASIC0.65□□□□□ -2.31
MMP3P08254 SNORD38.2-201ENST00000384470 69 ntBASIC0.65□□□□□ -2.31
MMP3P08254 MIR548I2-201ENST00000408348 149 ntBASIC0.65□□□□□ -2.31
MMP3P08254 MIR548G-201ENST00000408442 89 ntBASIC0.65□□□□□ -2.31
MMP3P08254 RNU6-469P-201ENST00000516253 101 ntBASIC0.65□□□□□ -2.31
MMP3P08254 RNU6-412P-201ENST00000516434 106 ntBASIC0.65□□□□□ -2.31
MMP3P08254 RNU6-589P-201ENST00000516485 107 ntBASIC0.65□□□□□ -2.31
MMP3P08254 RNU6-1018P-201ENST00000516577 106 ntBASIC0.65□□□□□ -2.31
MMP3P08254 MIR4694-201ENST00000578534 80 ntBASIC0.65□□□□□ -2.31
MMP3P08254 MIR548H5-201ENST00000580314 60 ntBASIC0.65□□□□□ -2.31
MMP3P08254 uc_338.28-201ENST00000612082 187 ntBASIC0.65□□□□□ -2.31
MMP3P08254 MIR8087-201ENST00000612745 78 ntBASIC0.65□□□□□ -2.31
MMP3P08254 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.65□□□□□ -2.31
MMP3P08254 RNU6-832P-201ENST00000363319 107 ntBASIC0.64□□□□□ -2.31
MMP3P08254 SNORD18A-201ENST00000363753 72 ntBASIC0.64□□□□□ -2.31
MMP3P08254 Y_RNA.174-201ENST00000363781 105 ntBASIC0.64□□□□□ -2.31
MMP3P08254 RNU6-1325P-201ENST00000364905 105 ntBASIC0.64□□□□□ -2.31
MMP3P08254 Y_RNA.323-201ENST00000365157 109 ntBASIC0.64□□□□□ -2.31
MMP3P08254 Y_RNA.567-201ENST00000384736 106 ntBASIC0.64□□□□□ -2.31
MMP3P08254 Y_RNA.659-201ENST00000515994 113 ntBASIC0.64□□□□□ -2.31
MMP3P08254 RNA5SP94-201ENST00000516917 108 ntBASIC0.64□□□□□ -2.31
MMP3P08254 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.64□□□□□ -2.31
MMP3P08254 RNU6-834P-201ENST00000362367 110 ntBASIC0.63□□□□□ -2.31
MMP3P08254 RNY3P2-201ENST00000362918 102 ntBASIC0.63□□□□□ -2.31
MMP3P08254 MIR635-201ENST00000384830 98 ntBASIC0.63□□□□□ -2.31
MMP3P08254 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.63□□□□□ -2.31
MMP3P08254 SNORD63B-201ENST00000411005 70 ntBASIC0.63□□□□□ -2.31
MMP3P08254 RNU6-229P-201ENST00000516614 102 ntBASIC0.63□□□□□ -2.31
MMP3P08254 MIR548AI-201ENST00000579940 88 ntBASIC0.63□□□□□ -2.31
MMP3P08254 AC091304.10-201ENST00000641554 121 ntBASIC0.63□□□□□ -2.31
MMP3P08254 RNU6-170P-201ENST00000362832 104 ntBASIC0.62□□□□□ -2.31
MMP3P08254 RNU6-1099P-201ENST00000363533 107 ntBASIC0.62□□□□□ -2.31
MMP3P08254 RNU6-716P-201ENST00000365621 103 ntBASIC0.62□□□□□ -2.31
MMP3P08254 RNU6-571P-201ENST00000384128 107 ntBASIC0.62□□□□□ -2.31
MMP3P08254 RNU6-554P-201ENST00000410466 106 ntBASIC0.62□□□□□ -2.31
MMP3P08254 Y_RNA.629-201ENST00000411368 105 ntBASIC0.62□□□□□ -2.31
MMP3P08254 RNU7-195P-201ENST00000458793 62 ntBASIC0.62□□□□□ -2.31
MMP3P08254 RNU7-106P-201ENST00000459514 67 ntBASIC0.62□□□□□ -2.31
MMP3P08254 Y_RNA.709-201ENST00000516952 92 ntBASIC0.62□□□□□ -2.31
MMP3P08254 RNU6-90P-201ENST00000606352 106 ntBASIC0.62□□□□□ -2.31
MMP3P08254 AL109933.3-201ENST00000619095 188 ntBASIC0.62□□□□□ -2.31
MMP3P08254 MIR5087-201ENST00000635826 76 ntBASIC0.62□□□□□ -2.31
MMP3P08254 MIR330-201ENST00000362196 94 ntBASIC0.61□□□□□ -2.31
MMP3P08254 Y_RNA.163-201ENST00000363702 113 ntBASIC0.61□□□□□ -2.31
MMP3P08254 RNU6-945P-201ENST00000383947 107 ntBASIC0.61□□□□□ -2.31
MMP3P08254 SNORD20-201ENST00000384550 80 ntBASIC0.61□□□□□ -2.31
MMP3P08254 MIR516A2-201ENST00000384888 90 ntBASIC0.61□□□□□ -2.31
MMP3P08254 MIR516A1-201ENST00000385033 90 ntBASIC0.61□□□□□ -2.31
MMP3P08254 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.61□□□□□ -2.31
MMP3P08254 AC138869.1-201ENST00000568623 124 ntBASIC0.61□□□□□ -2.31
MMP3P08254 MIR548Z-201ENST00000584743 97 ntBASIC0.61□□□□□ -2.31
MMP3P08254 SNORA36.1-201ENST00000363424 132 ntBASIC0.6□□□□□ -2.31
MMP3P08254 SNORD115-24-201ENST00000363528 82 ntBASIC0.6□□□□□ -2.31
MMP3P08254 Y_RNA.221-201ENST00000364248 96 ntBASIC0.6□□□□□ -2.31
MMP3P08254 RNA5SP517-201ENST00000364724 117 ntBASIC0.6□□□□□ -2.31
MMP3P08254 Y_RNA.377-201ENST00000365644 108 ntBASIC0.6□□□□□ -2.31
MMP3P08254 MIR599-201ENST00000385069 95 ntBASIC0.6□□□□□ -2.31
MMP3P08254 RNY4P18-201ENST00000391107 89 ntBASIC0.6□□□□□ -2.31
MMP3P08254 AC109327.2-201ENST00000448339 378 ntBASIC0.6□□□□□ -2.31
MMP3P08254 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.6□□□□□ -2.31
MMP3P08254 SNORA25.18-201ENST00000607153 114 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 190 ms