Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.31□□□□□ -2.46
MSH6P52701 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.31□□□□□ -2.46
MSH6P52701 RNU4-69P-201ENST00000410677 143 ntBASIC-0.31□□□□□ -2.46
MSH6P52701 AL117187.1-201ENST00000555482 181 ntBASIC-0.31□□□□□ -2.46
MSH6P52701 MIR4500-201ENST00000579472 76 ntBASIC-0.31□□□□□ -2.46
MSH6P52701 Y_RNA.47-201ENST00000362697 108 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 RNU6-768P-201ENST00000384683 107 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 Y_RNA.604-201ENST00000410574 102 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 MTND2P23-201ENST00000422990 651 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 RNU2-60P-201ENST00000517290 128 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 AC138907.4-201ENST00000570107 226 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 SNORA18.1-201ENST00000363418 128 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 Y_RNA.288-201ENST00000364854 92 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 MIR599-201ENST00000385069 95 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 RNU6-240P-201ENST00000516098 97 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 IGHVII-40-1-201ENST00000517316 58 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 MIR3149-201ENST00000584629 83 ntBASIC-0.32□□□□□ -2.46
MSH6P52701 Y_RNA.20-201ENST00000362479 113 ntBASIC-0.33□□□□□ -2.46
MSH6P52701 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.33□□□□□ -2.46
MSH6P52701 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.33□□□□□ -2.46
MSH6P52701 Y_RNA.326-201ENST00000365176 113 ntBASIC-0.33□□□□□ -2.46
MSH6P52701 MIR548I2-201ENST00000408348 149 ntBASIC-0.33□□□□□ -2.46
MSH6P52701 RNU7-48P-201ENST00000458875 63 ntBASIC-0.33□□□□□ -2.46
MSH6P52701 SNORD4A-201ENST00000459174 72 ntBASIC-0.33□□□□□ -2.46
MSH6P52701 RNU7-164P-201ENST00000459221 62 ntBASIC-0.33□□□□□ -2.46
MSH6P52701 AC021443.1-201ENST00000604478 211 ntBASIC-0.33□□□□□ -2.46
MSH6P52701 Y_RNA.11-201ENST00000362375 109 ntBASIC-0.34□□□□□ -2.46
MSH6P52701 Y_RNA.145-201ENST00000363527 102 ntBASIC-0.34□□□□□ -2.46
MSH6P52701 SNORD27-201ENST00000363981 72 ntBASIC-0.34□□□□□ -2.46
MSH6P52701 RNU6-865P-201ENST00000364772 107 ntBASIC-0.34□□□□□ -2.46
MSH6P52701 RNU6-818P-201ENST00000364837 108 ntBASIC-0.34□□□□□ -2.46
MSH6P52701 MIR206-201ENST00000384872 86 ntBASIC-0.34□□□□□ -2.46
MSH6P52701 MTATP6P21-201ENST00000440681 189 ntBASIC-0.34□□□□□ -2.46
MSH6P52701 AC097635.1-201ENST00000450678 155 ntBASIC-0.34□□□□□ -2.46
MSH6P52701 RNU6-320P-201ENST00000516511 106 ntBASIC-0.34□□□□□ -2.46
MSH6P52701 RNU6-509P-201ENST00000363519 107 ntBASIC-0.35□□□□□ -2.47
MSH6P52701 Y_RNA.497-201ENST00000384447 98 ntBASIC-0.35□□□□□ -2.47
MSH6P52701 MIR606-201ENST00000384851 96 ntBASIC-0.35□□□□□ -2.47
MSH6P52701 MIR519A1-201ENST00000385257 85 ntBASIC-0.35□□□□□ -2.47
MSH6P52701 SNORA75.1-201ENST00000391130 148 ntBASIC-0.35□□□□□ -2.47
MSH6P52701 RNU6-918P-201ENST00000391219 106 ntBASIC-0.35□□□□□ -2.47
MSH6P52701 SNORD110-201ENST00000408189 75 ntBASIC-0.35□□□□□ -2.47
MSH6P52701 Y_RNA.793-201ENST00000411222 111 ntBASIC-0.35□□□□□ -2.47
MSH6P52701 MIR3920-201ENST00000581751 86 ntBASIC-0.35□□□□□ -2.47
MSH6P52701 AC008737.2-201ENST00000599446 118 ntBASIC-0.35□□□□□ -2.47
MSH6P52701 Y_RNA.149-201ENST00000363558 117 ntBASIC-0.36□□□□□ -2.47
MSH6P52701 Y_RNA.435-201ENST00000384095 112 ntBASIC-0.36□□□□□ -2.47
MSH6P52701 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.36□□□□□ -2.47
MSH6P52701 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-0.36□□□□□ -2.47
MSH6P52701 RNU7-123P-201ENST00000515911 60 ntBASIC-0.36□□□□□ -2.47
MSH6P52701 CR383656.4-201ENST00000546909 122 ntBASIC-0.36□□□□□ -2.47
MSH6P52701 RNU6-312P-201ENST00000364629 107 ntBASIC-0.37□□□□□ -2.47
MSH6P52701 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.37□□□□□ -2.47
MSH6P52701 Y_RNA.337-201ENST00000365312 102 ntBASIC-0.37□□□□□ -2.47
MSH6P52701 SNORD114-12-201ENST00000365400 75 ntBASIC-0.37□□□□□ -2.47
MSH6P52701 AC006210.1-201ENST00000424882 111 ntBASIC-0.37□□□□□ -2.47
MSH6P52701 BX276092.1-201ENST00000427368 251 ntBASIC-0.37□□□□□ -2.47
MSH6P52701 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 Y_RNA.478-201ENST00000384358 107 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 Y_RNA.556-201ENST00000384677 113 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 SNORA75.5-201ENST00000391291 81 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 MIR876-201ENST00000401147 81 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 NAMPTP3-201ENST00000569273 224 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 AC009779.6-201ENST00000603972 165 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 AC084368.1-201ENST00000620935 65 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 AP001362.1-201ENST00000625165 124 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 MIR6844-201ENST00000637122 62 ntBASIC-0.38□□□□□ -2.47
MSH6P52701 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.39□□□□□ -2.47
MSH6P52701 RNU6-588P-201ENST00000410281 105 ntBASIC-0.39□□□□□ -2.47
MSH6P52701 RNA5SP484-201ENST00000458857 111 ntBASIC-0.39□□□□□ -2.47
MSH6P52701 RNU7-2P-201ENST00000516096 62 ntBASIC-0.39□□□□□ -2.47
MSH6P52701 RNU4-71P-201ENST00000516258 113 ntBASIC-0.39□□□□□ -2.47
MSH6P52701 MIR3646-201ENST00000578301 84 ntBASIC-0.39□□□□□ -2.47
MSH6P52701 MIR6514-201ENST00000622549 70 ntBASIC-0.39□□□□□ -2.47
MSH6P52701 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.4□□□□□ -2.47
MSH6P52701 RNU6-738P-201ENST00000384531 106 ntBASIC-0.4□□□□□ -2.47
MSH6P52701 RNU6-1307P-201ENST00000391012 103 ntBASIC-0.4□□□□□ -2.47
MSH6P52701 SNORD77B-201ENST00000391112 67 ntBASIC-0.4□□□□□ -2.47
MSH6P52701 SNORD63B-201ENST00000411005 70 ntBASIC-0.4□□□□□ -2.47
MSH6P52701 RNU7-195P-201ENST00000458793 62 ntBASIC-0.4□□□□□ -2.47
MSH6P52701 Y_RNA.651-201ENST00000459380 103 ntBASIC-0.4□□□□□ -2.47
MSH6P52701 AC107027.2-201ENST00000512197 115 ntBASIC-0.4□□□□□ -2.47
MSH6P52701 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.4□□□□□ -2.47
MSH6P52701 SNORA25.13-201ENST00000516395 103 ntBASIC-0.4□□□□□ -2.47
MSH6P52701 SNORD115-35-201ENST00000365122 82 ntBASIC-0.41□□□□□ -2.47
MSH6P52701 AC109327.2-201ENST00000448339 378 ntBASIC-0.41□□□□□ -2.47
MSH6P52701 RNU7-74P-201ENST00000459104 62 ntBASIC-0.41□□□□□ -2.47
MSH6P52701 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.41□□□□□ -2.47
MSH6P52701 AL670379.3-201ENST00000605040 251 ntBASIC-0.41□□□□□ -2.47
MSH6P52701 Y_RNA.812-201ENST00000610788 101 ntBASIC-0.41□□□□□ -2.47
MSH6P52701 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.41□□□□□ -2.47
MSH6P52701 Y_RNA.784-201ENST00000613803 101 ntBASIC-0.41□□□□□ -2.47
MSH6P52701 Y_RNA.787-201ENST00000616522 101 ntBASIC-0.41□□□□□ -2.47
MSH6P52701 Y_RNA.780-201ENST00000617336 101 ntBASIC-0.41□□□□□ -2.47
MSH6P52701 Y_RNA.801-201ENST00000619005 101 ntBASIC-0.41□□□□□ -2.47
MSH6P52701 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.42□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 203.8 ms