Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU6-860P-201ENST00000410860 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-1217P-201ENST00000411276 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-785P-201ENST00000411324 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU7-102P-201ENST00000458948 62 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-589P-201ENST00000516485 107 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 MIR6082-201ENST00000613604 109 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 U6.90-201ENST00000614007 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 MIR376B-201ENST00000614515 100 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 U6.70-201ENST00000620287 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 Y_RNA.119-201ENST00000363301 96 ntBASIC1.06□□□□□ -2.24
SMARCA1P28370 Y_RNA.155-201ENST00000363632 101 ntBASIC1.06□□□□□ -2.24
SMARCA1P28370 Y_RNA.507-201ENST00000384500 99 ntBASIC1.06□□□□□ -2.24
SMARCA1P28370 SNORA72.6-201ENST00000384520 129 ntBASIC1.06□□□□□ -2.24
SMARCA1P28370 RNY1P4-201ENST00000384595 115 ntBASIC1.06□□□□□ -2.24
SMARCA1P28370 SNORD105-201ENST00000386910 85 ntBASIC1.06□□□□□ -2.24
SMARCA1P28370 RNU6-865P-201ENST00000364772 107 ntBASIC1.05□□□□□ -2.24
SMARCA1P28370 RNU6-1325P-201ENST00000364905 105 ntBASIC1.05□□□□□ -2.24
SMARCA1P28370 U8.6-201ENST00000364939 135 ntBASIC1.05□□□□□ -2.24
SMARCA1P28370 Y_RNA.309-201ENST00000365046 111 ntBASIC1.05□□□□□ -2.24
SMARCA1P28370 RNU6-409P-201ENST00000384114 104 ntBASIC1.05□□□□□ -2.24
SMARCA1P28370 MIR520H-201ENST00000385126 88 ntBASIC1.05□□□□□ -2.24
SMARCA1P28370 MIR1912-201ENST00000410389 80 ntBASIC1.05□□□□□ -2.24
SMARCA1P28370 RPL39P28-201ENST00000465655 155 ntBASIC1.05□□□□□ -2.24
SMARCA1P28370 RNU6-531P-201ENST00000516694 104 ntBASIC1.05□□□□□ -2.24
SMARCA1P28370 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.05□□□□□ -2.24
SMARCA1P28370 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.05□□□□□ -2.24
SMARCA1P28370 Y_RNA.323-201ENST00000365157 109 ntBASIC1.04□□□□□ -2.24
SMARCA1P28370 SNORD20-201ENST00000384550 80 ntBASIC1.04□□□□□ -2.24
SMARCA1P28370 RNU1-119P-201ENST00000391122 165 ntBASIC1.04□□□□□ -2.24
SMARCA1P28370 RNU6-733P-201ENST00000410759 104 ntBASIC1.04□□□□□ -2.24
SMARCA1P28370 RNU6-1107P-201ENST00000364817 104 ntBASIC1.03□□□□□ -2.24
SMARCA1P28370 MIR216A-201ENST00000385063 110 ntBASIC1.03□□□□□ -2.24
SMARCA1P28370 Y_RNA.709-201ENST00000516952 92 ntBASIC1.03□□□□□ -2.24
SMARCA1P28370 DEFB131E-201ENST00000532329 154 ntBASIC1.03□□□□□ -2.24
SMARCA1P28370 MIR5009-201ENST00000578736 100 ntBASIC1.03□□□□□ -2.24
SMARCA1P28370 AC025627.3-201ENST00000582078 182 ntBASIC1.03□□□□□ -2.24
SMARCA1P28370 AC013244.2-201ENST00000603396 103 ntBASIC1.03□□□□□ -2.24
SMARCA1P28370 AP001362.1-201ENST00000625165 124 ntBASIC1.03□□□□□ -2.24
SMARCA1P28370 RNU6-1313P-201ENST00000362622 102 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 Y_RNA.360-201ENST00000365512 102 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
SMARCA1P28370 RNU6-1014P-201ENST00000383940 103 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 RNU6-412P-201ENST00000516434 106 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 MIR4500-201ENST00000579472 76 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 MIR3973-201ENST00000579824 107 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 AC090897.1-201ENST00000580909 226 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 RN7SL793P-201ENST00000583259 296 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 AC211469.2-201ENST00000605461 205 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 AL512310.12-203ENST00000640543 90 ntBASIC1.02□□□□□ -2.25
SMARCA1P28370 Y_RNA.49-201ENST00000362714 112 ntBASIC1.01□□□□□ -2.25
SMARCA1P28370 RNU4-58P-201ENST00000363192 141 ntBASIC1.01□□□□□ -2.25
SMARCA1P28370 RNU6-215P-201ENST00000365169 102 ntBASIC1.01□□□□□ -2.25
SMARCA1P28370 RNY4P18-201ENST00000391107 89 ntBASIC1.01□□□□□ -2.25
SMARCA1P28370 SNORD99-201ENST00000408612 74 ntBASIC1.01□□□□□ -2.25
SMARCA1P28370 RNU6-1018P-201ENST00000516577 106 ntBASIC1.01□□□□□ -2.25
SMARCA1P28370 RNU6-765P-201ENST00000516916 99 ntBASIC1.01□□□□□ -2.25
SMARCA1P28370 RNU6-1006P-201ENST00000516998 103 ntBASIC1.01□□□□□ -2.25
SMARCA1P28370 Y_RNA.247-201ENST00000364500 92 ntBASIC1□□□□□ -2.25
SMARCA1P28370 MIR608-201ENST00000384820 100 ntBASIC1□□□□□ -2.25
SMARCA1P28370 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1□□□□□ -2.25
SMARCA1P28370 ACA64.5-201ENST00000516207 127 ntBASIC1□□□□□ -2.25
SMARCA1P28370 RNU6-1201P-201ENST00000384227 107 ntBASIC0.99□□□□□ -2.25
SMARCA1P28370 MIR577-201ENST00000385196 96 ntBASIC0.99□□□□□ -2.25
SMARCA1P28370 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.99□□□□□ -2.25
SMARCA1P28370 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.98□□□□□ -2.25
SMARCA1P28370 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.98□□□□□ -2.25
SMARCA1P28370 RNU6-351P-201ENST00000516097 100 ntBASIC0.98□□□□□ -2.25
SMARCA1P28370 RNU6-1194P-201ENST00000516208 104 ntBASIC0.98□□□□□ -2.25
SMARCA1P28370 RNU6-448P-201ENST00000517052 107 ntBASIC0.98□□□□□ -2.25
SMARCA1P28370 MIR3613-201ENST00000579844 87 ntBASIC0.98□□□□□ -2.25
SMARCA1P28370 AL353765.1-201ENST00000605514 183 ntBASIC0.98□□□□□ -2.25
SMARCA1P28370 RNU6-1099P-201ENST00000363533 107 ntBASIC0.97□□□□□ -2.25
SMARCA1P28370 MIR573-201ENST00000384964 99 ntBASIC0.97□□□□□ -2.25
SMARCA1P28370 MIR5000-201ENST00000577717 103 ntBASIC0.97□□□□□ -2.25
SMARCA1P28370 AL442128.1-201ENST00000615151 90 ntBASIC0.97□□□□□ -2.25
SMARCA1P28370 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.97□□□□□ -2.25
SMARCA1P28370 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
SMARCA1P28370 RNU6-832P-201ENST00000363319 107 ntBASIC0.96□□□□□ -2.26
SMARCA1P28370 RNU6-106P-201ENST00000384405 107 ntBASIC0.96□□□□□ -2.26
SMARCA1P28370 AC244098.3-201ENST00000424803 96 ntBASIC0.96□□□□□ -2.26
SMARCA1P28370 AC002350.1-201ENST00000490759 375 ntBASIC0.96□□□□□ -2.26
SMARCA1P28370 Y_RNA.697-201ENST00000516776 113 ntBASIC0.96□□□□□ -2.26
SMARCA1P28370 AP003327.1-201ENST00000529684 127 ntBASIC0.96□□□□□ -2.26
SMARCA1P28370 AC011195.1-201ENST00000578177 177 ntBASIC0.96□□□□□ -2.26
SMARCA1P28370 MIR4694-201ENST00000578534 80 ntBASIC0.96□□□□□ -2.26
SMARCA1P28370 HSBP1P2-201ENST00000299671 229 ntBASIC0.95□□□□□ -2.26
SMARCA1P28370 Y_RNA.30-201ENST00000362572 97 ntBASIC0.95□□□□□ -2.26
SMARCA1P28370 RNY3P2-201ENST00000362918 102 ntBASIC0.95□□□□□ -2.26
SMARCA1P28370 Y_RNA.377-201ENST00000365644 108 ntBASIC0.95□□□□□ -2.26
SMARCA1P28370 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
SMARCA1P28370 Y_RNA.536-201ENST00000384621 113 ntBASIC0.95□□□□□ -2.26
SMARCA1P28370 RNU6-291P-201ENST00000384720 107 ntBASIC0.95□□□□□ -2.26
SMARCA1P28370 SNORD100-201ENST00000408573 76 ntBASIC0.95□□□□□ -2.26
SMARCA1P28370 BX276092.1-201ENST00000427368 251 ntBASIC0.95□□□□□ -2.26
SMARCA1P28370 RNU6-919P-201ENST00000516731 104 ntBASIC0.95□□□□□ -2.26
SMARCA1P28370 MIR4653-201ENST00000585107 83 ntBASIC0.95□□□□□ -2.26
SMARCA1P28370 Y_RNA.163-201ENST00000363702 113 ntBASIC0.94□□□□□ -2.26
SMARCA1P28370 SNORD38.1-201ENST00000363863 68 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 174.6 ms