Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 ZNF209P-201ENST00000593450 2304 ntBASIC1.52□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.388-201ENST00000383919 113 ntBASIC1.51□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU6-571P-201ENST00000384128 107 ntBASIC1.51□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 MIR450A2-201ENST00000385022 100 ntBASIC1.51□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.51□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU7-40P-201ENST00000516397 64 ntBASIC1.51□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU1-92P-201ENST00000517017 135 ntBASIC1.51□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNY1P10-201ENST00000363268 113 ntBASIC1.5□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 MIR125B2-201ENST00000385128 89 ntBASIC1.5□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 AP1B1P2-201ENST00000416196 106 ntBASIC1.5□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RPS26P5-201ENST00000418544 335 ntBASIC1.5□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.13-201ENST00000362403 112 ntBASIC1.49□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.57-201ENST00000362806 113 ntBASIC1.49□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 SNORD116-22-201ENST00000384430 92 ntBASIC1.49□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 AC004223.1-201ENST00000479840 271 ntBASIC1.49□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 AL512598.1-201ENST00000610158 273 ntBASIC1.49□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 MIR6082-201ENST00000613604 109 ntBASIC1.49□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 MIR8066-201ENST00000617280 78 ntBASIC1.49□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU6-402P-201ENST00000410678 103 ntBASIC1.48□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU1-123P-201ENST00000458950 160 ntBASIC1.48□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 AC068338.1-201ENST00000565567 176 ntBASIC1.48□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 MIR4421-201ENST00000578133 69 ntBASIC1.48□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 MIR494-201ENST00000349529 81 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU6-369P-201ENST00000362515 102 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU6-820P-201ENST00000384273 107 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 SNORD12-201ENST00000391002 90 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU6-994P-201ENST00000410507 111 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.609-201ENST00000410669 89 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU6-1194P-201ENST00000516208 104 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RN7SKP12-201ENST00000516275 143 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 MIR4676-201ENST00000583078 72 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 AC013244.2-201ENST00000603396 103 ntBASIC1.47□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR378A-201ENST00000362177 66 ntBASIC1.46□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNA5SP432-201ENST00000362480 116 ntBASIC1.46□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNU7-156P-201ENST00000517214 74 ntBASIC1.46□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR4668-201ENST00000582284 70 ntBASIC1.46□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR7974-201ENST00000615835 79 ntBASIC1.46□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNA5SP327-201ENST00000362494 101 ntBASIC1.45□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.42-201ENST00000362660 108 ntBASIC1.45□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNU6-219P-201ENST00000364728 107 ntBASIC1.45□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNU6-675P-201ENST00000384236 104 ntBASIC1.45□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR222-201ENST00000384992 110 ntBASIC1.45□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNU6-267P-201ENST00000516714 103 ntBASIC1.45□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNU6-765P-201ENST00000516916 99 ntBASIC1.45□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR101-2-201ENST00000362195 79 ntBASIC1.44□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 SNORA7.1-201ENST00000363750 139 ntBASIC1.44□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 SNORA25-201ENST00000384384 134 ntBASIC1.44□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNY1P4-201ENST00000384595 115 ntBASIC1.44□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 SNORD100-201ENST00000408573 76 ntBASIC1.44□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.620-201ENST00000411009 88 ntBASIC1.44□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 AC002429.1-201ENST00000437672 148 ntBASIC1.44□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.44□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR4781-201ENST00000585250 76 ntBASIC1.44□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 IGLL4P-201ENST00000614590 133 ntBASIC1.44□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNY1P1-201ENST00000364372 112 ntBASIC1.43□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR516A2-201ENST00000384888 90 ntBASIC1.43□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR516A1-201ENST00000385033 90 ntBASIC1.43□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR758-201ENST00000390227 88 ntBASIC1.43□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 SNORD92-201ENST00000585078 85 ntBASIC1.43□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNU6-364P-201ENST00000384387 107 ntBASIC1.42□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.42□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR938-201ENST00000401216 83 ntBASIC1.42□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNU7-106P-201ENST00000459514 67 ntBASIC1.42□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNU6-237P-201ENST00000515985 71 ntBASIC1.42□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNA5SP458-201ENST00000516188 119 ntBASIC1.42□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR4804-201ENST00000581683 73 ntBASIC1.42□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.42□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 AC027335.2-201ENST00000624030 375 ntBASIC1.42□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 SNORD36A-201ENST00000362874 73 ntBASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.73-201ENST00000362910 113 ntBASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNA5SP173-201ENST00000364857 136 ntBASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR100-201ENST00000385259 80 ntBASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 SNORA40.6-201ENST00000391153 128 ntBASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNU6-1254P-201ENST00000391266 104 ntBASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 SNORD63B-201ENST00000411005 70 ntBASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 AL603825.1-201ENST00000438481 80 ntBASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 RNU6-977P-201ENST00000516411 103 ntBASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR3660-201ENST00000584845 100 ntBASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
NPHP3-ACAD11A0A0J9YXS1 MIR1-1-201ENST00000362147 71 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.56-201ENST00000362798 112 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-1152P-201ENST00000384576 107 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.536-201ENST00000384621 113 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 MIR635-201ENST00000384830 98 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU6-592P-201ENST00000411333 103 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 AL161932.1-201ENST00000437408 146 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RPS29P23-201ENST00000458635 123 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 RNU7-102P-201ENST00000458948 62 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 TRAJ51-201ENST00000504127 63 ntBASIC1.4□□□□□ -2.19
NPHP3-ACAD11A0A0J9YXS1 MIR548H5-201ENST00000580314 60 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 171.6 ms