Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MIR588-201ENST00000384900 83 ntBASIC1.9□□□□□ -2.11
USHBP1Q8N6Y0 AC133485.1-201ENST00000567176 124 ntBASIC1.9□□□□□ -2.11
USHBP1Q8N6Y0 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 SNORA25.3-201ENST00000363205 127 ntBASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 SPINT5P-201ENST00000448174 155 ntBASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 snoU13.9-201ENST00000458927 103 ntBASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 MTND5P40-201ENST00000559945 246 ntBASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 AP000753.3-201ENST00000604083 169 ntBASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 AC103810.7-201ENST00000607821 91 ntBASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 AL353770.2-201ENST00000620024 78 ntBASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 MIR8063-201ENST00000621930 81 ntBASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 AP001362.1-201ENST00000625165 124 ntBASIC1.89□□□□□ -2.11
USHBP1Q8N6Y0 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.88□□□□□ -2.11
USHBP1Q8N6Y0 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.88□□□□□ -2.11
USHBP1Q8N6Y0 RNU11-2P-201ENST00000516898 142 ntBASIC1.88□□□□□ -2.11
USHBP1Q8N6Y0 AC012676.2-201ENST00000619258 186 ntBASIC1.88□□□□□ -2.11
USHBP1Q8N6Y0 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.87□□□□□ -2.11
USHBP1Q8N6Y0 MIR563-201ENST00000385080 79 ntBASIC1.87□□□□□ -2.11
USHBP1Q8N6Y0 MIR30A-201ENST00000385092 71 ntBASIC1.87□□□□□ -2.11
USHBP1Q8N6Y0 RNU6-592P-201ENST00000411333 103 ntBASIC1.87□□□□□ -2.11
USHBP1Q8N6Y0 AC005908.1-201ENST00000468701 347 ntBASIC1.87□□□□□ -2.11
USHBP1Q8N6Y0 MIR2115-201ENST00000516657 100 ntBASIC1.87□□□□□ -2.11
USHBP1Q8N6Y0 RNA5SP102-201ENST00000516865 106 ntBASIC1.87□□□□□ -2.11
USHBP1Q8N6Y0 SNORA44.1-201ENST00000517031 108 ntBASIC1.87□□□□□ -2.11
USHBP1Q8N6Y0 MIR3122-201ENST00000577243 73 ntBASIC1.87□□□□□ -2.11
USHBP1Q8N6Y0 MIR4264-201ENST00000583520 66 ntBASIC1.87□□□□□ -2.11
USHBP1Q8N6Y0 SNORD33-201ENST00000362761 85 ntBASIC1.86□□□□□ -2.11
USHBP1Q8N6Y0 Y_RNA.173-201ENST00000363776 113 ntBASIC1.86□□□□□ -2.11
USHBP1Q8N6Y0 RNY1P2-201ENST00000364820 117 ntBASIC1.86□□□□□ -2.11
USHBP1Q8N6Y0 SNORD1A-201ENST00000364968 72 ntBASIC1.86□□□□□ -2.11
USHBP1Q8N6Y0 MT-TN-201ENST00000387400 73 ntBASIC1.86□□□□□ -2.11
USHBP1Q8N6Y0 RNU1-123P-201ENST00000458950 160 ntBASIC1.86□□□□□ -2.11
USHBP1Q8N6Y0 RNU1-98P-201ENST00000458992 160 ntBASIC1.86□□□□□ -2.11
USHBP1Q8N6Y0 AP003716.2-201ENST00000528260 108 ntBASIC1.86□□□□□ -2.11
USHBP1Q8N6Y0 AP003327.1-201ENST00000529684 127 ntBASIC1.86□□□□□ -2.11
USHBP1Q8N6Y0 SEPT14P17-201ENST00000617978 177 ntBASIC1.86□□□□□ -2.11
USHBP1Q8N6Y0 RNU6-1244P-201ENST00000363614 108 ntBASIC1.85□□□□□ -2.11
USHBP1Q8N6Y0 RNU6-675P-201ENST00000384236 104 ntBASIC1.85□□□□□ -2.11
USHBP1Q8N6Y0 MIR489-201ENST00000384923 84 ntBASIC1.85□□□□□ -2.11
USHBP1Q8N6Y0 MIR320A-201ENST00000385302 82 ntBASIC1.85□□□□□ -2.11
USHBP1Q8N6Y0 snoU13.25-201ENST00000458945 104 ntBASIC1.85□□□□□ -2.11
USHBP1Q8N6Y0 AC079140.2-201ENST00000506193 142 ntBASIC1.85□□□□□ -2.11
USHBP1Q8N6Y0 MIR3198-2-201ENST00000577868 80 ntBASIC1.85□□□□□ -2.11
USHBP1Q8N6Y0 MIR1245B-201ENST00000636115 69 ntBASIC1.85□□□□□ -2.11
USHBP1Q8N6Y0 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
USHBP1Q8N6Y0 MIR302D-201ENST00000362275 68 ntBASIC1.84□□□□□ -2.11
USHBP1Q8N6Y0 RNU6-1125P-201ENST00000363601 107 ntBASIC1.84□□□□□ -2.11
USHBP1Q8N6Y0 RNU6-480P-201ENST00000384332 107 ntBASIC1.84□□□□□ -2.11
USHBP1Q8N6Y0 RNU6-402P-201ENST00000410678 103 ntBASIC1.84□□□□□ -2.11
USHBP1Q8N6Y0 AC004223.1-201ENST00000479840 271 ntBASIC1.84□□□□□ -2.11
USHBP1Q8N6Y0 SNORA4-201ENST00000584302 138 ntBASIC1.84□□□□□ -2.11
USHBP1Q8N6Y0 MIR6504-201ENST00000613520 61 ntBASIC1.84□□□□□ -2.11
USHBP1Q8N6Y0 MIR6740-201ENST00000618268 113 ntBASIC1.84□□□□□ -2.11
USHBP1Q8N6Y0 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USHBP1Q8N6Y0 MIR96-201ENST00000362288 78 ntBASIC1.83□□□□□ -2.12
USHBP1Q8N6Y0 RNA5SP264-201ENST00000363115 107 ntBASIC1.83□□□□□ -2.12
USHBP1Q8N6Y0 AC023790.1-201ENST00000482174 347 ntBASIC1.83□□□□□ -2.12
USHBP1Q8N6Y0 AC022137.1-201ENST00000483735 151 ntBASIC1.83□□□□□ -2.12
USHBP1Q8N6Y0 AC008834.1-201ENST00000511612 175 ntBASIC1.83□□□□□ -2.12
USHBP1Q8N6Y0 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.83□□□□□ -2.12
USHBP1Q8N6Y0 MIR4668-201ENST00000582284 70 ntBASIC1.83□□□□□ -2.12
USHBP1Q8N6Y0 MIR6516-201ENST00000630554 81 ntBASIC1.83□□□□□ -2.12
USHBP1Q8N6Y0 HSBP1P2-201ENST00000299671 229 ntBASIC1.82□□□□□ -2.12
USHBP1Q8N6Y0 Y_RNA.168-201ENST00000363740 102 ntBASIC1.82□□□□□ -2.12
USHBP1Q8N6Y0 Y_RNA.219-201ENST00000364232 113 ntBASIC1.82□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-242P-201ENST00000384359 107 ntBASIC1.82□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-205P-201ENST00000390858 107 ntBASIC1.82□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-1165P-201ENST00000410119 107 ntBASIC1.82□□□□□ -2.12
USHBP1Q8N6Y0 RNU7-62P-201ENST00000458856 62 ntBASIC1.82□□□□□ -2.12
USHBP1Q8N6Y0 RPL30P7-201ENST00000479312 323 ntBASIC1.82□□□□□ -2.12
USHBP1Q8N6Y0 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 MIR30D-201ENST00000362283 70 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-219P-201ENST00000364728 107 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-1065P-201ENST00000384513 106 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 RNY1P4-201ENST00000384595 115 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 MIR1185-1-201ENST00000408598 86 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 Y_RNA.620-201ENST00000411009 88 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 AC245517.4-201ENST00000448601 281 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 Y_RNA.685-201ENST00000516532 108 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-267P-201ENST00000516714 103 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 AC138749.4-201ENST00000563970 127 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 MIR4500-201ENST00000579472 76 ntBASIC1.81□□□□□ -2.12
USHBP1Q8N6Y0 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
USHBP1Q8N6Y0 MIR103A2-201ENST00000362154 78 ntBASIC1.8□□□□□ -2.12
USHBP1Q8N6Y0 SNORA2B-201ENST00000384583 137 ntBASIC1.8□□□□□ -2.12
USHBP1Q8N6Y0 MIR181B2-201ENST00000385004 89 ntBASIC1.8□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-613P-201ENST00000410412 108 ntBASIC1.8□□□□□ -2.12
USHBP1Q8N6Y0 AC019176.1-201ENST00000518519 225 ntBASIC1.8□□□□□ -2.12
USHBP1Q8N6Y0 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.79□□□□□ -2.12
USHBP1Q8N6Y0 SNORD114-22-201ENST00000365423 72 ntBASIC1.79□□□□□ -2.12
USHBP1Q8N6Y0 MT-TF-201ENST00000387314 71 ntBASIC1.79□□□□□ -2.12
USHBP1Q8N6Y0 SNORD78.1-201ENST00000390866 65 ntBASIC1.79□□□□□ -2.12
USHBP1Q8N6Y0 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.79□□□□□ -2.12
USHBP1Q8N6Y0 MIR3664-201ENST00000579074 99 ntBASIC1.79□□□□□ -2.12
USHBP1Q8N6Y0 MIR3937-201ENST00000580135 106 ntBASIC1.79□□□□□ -2.12
USHBP1Q8N6Y0 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.79□□□□□ -2.12
USHBP1Q8N6Y0 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
USHBP1Q8N6Y0 MIR377-201ENST00000362145 69 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 234.3 ms