Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 U6.109-201ENST00000636749 87 ntBASIC-0.19□□□□□ -2.44
MSH6P52701 SNORA25.7-201ENST00000364375 127 ntBASIC-0.19□□□□□ -2.44
MSH6P52701 RNY4P28-201ENST00000365281 93 ntBASIC-0.19□□□□□ -2.44
MSH6P52701 Y_RNA.461-201ENST00000384263 103 ntBASIC-0.19□□□□□ -2.44
MSH6P52701 Y_RNA.797-201ENST00000515977 94 ntBASIC-0.19□□□□□ -2.44
MSH6P52701 AC044792.1-201ENST00000593294 196 ntBASIC-0.19□□□□□ -2.44
MSH6P52701 RNU2-4P-201ENST00000606190 192 ntBASIC-0.19□□□□□ -2.44
MSH6P52701 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.19□□□□□ -2.44
MSH6P52701 RNU6-161P-201ENST00000363051 106 ntBASIC-0.2□□□□□ -2.44
MSH6P52701 SNORD114-10-201ENST00000363409 72 ntBASIC-0.2□□□□□ -2.44
MSH6P52701 Y_RNA.308-201ENST00000365043 101 ntBASIC-0.2□□□□□ -2.44
MSH6P52701 RNU6-643P-201ENST00000384018 107 ntBASIC-0.2□□□□□ -2.44
MSH6P52701 Y_RNA.422-201ENST00000384054 114 ntBASIC-0.2□□□□□ -2.44
MSH6P52701 MTATP8P1-201ENST00000467115 207 ntBASIC-0.2□□□□□ -2.44
MSH6P52701 RNU7-137P-201ENST00000516788 62 ntBASIC-0.2□□□□□ -2.44
MSH6P52701 MIR5706-201ENST00000579841 80 ntBASIC-0.2□□□□□ -2.44
MSH6P52701 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-0.2□□□□□ -2.44
MSH6P52701 RNU6-797P-201ENST00000363101 109 ntBASIC-0.21□□□□□ -2.44
MSH6P52701 SNORD67.1-201ENST00000516618 108 ntBASIC-0.21□□□□□ -2.44
MSH6P52701 RNU7-161P-201ENST00000517289 62 ntBASIC-0.21□□□□□ -2.44
MSH6P52701 AC006504.6-201ENST00000590142 199 ntBASIC-0.21□□□□□ -2.44
MSH6P52701 AL359881.1-201ENST00000602916 267 ntBASIC-0.21□□□□□ -2.44
MSH6P52701 MIR1295B-201ENST00000636144 60 ntBASIC-0.21□□□□□ -2.44
MSH6P52701 Y_RNA.54-201ENST00000362766 105 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 RNU6-756P-201ENST00000383997 107 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 SNORA32-201ENST00000384072 121 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 RNU6-429P-201ENST00000384582 108 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 Y_RNA.531-201ENST00000384589 121 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 Y_RNA.574-201ENST00000384766 95 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 RNU6-269P-201ENST00000391077 97 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 AC108059.2-201ENST00000434626 151 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 MTND1P19-201ENST00000511780 315 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 RNA5SP236-201ENST00000516169 116 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 MIR548AD-201ENST00000584780 82 ntBASIC-0.22□□□□□ -2.45
MSH6P52701 RNY1P2-201ENST00000364820 117 ntBASIC-0.23□□□□□ -2.45
MSH6P52701 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.23□□□□□ -2.45
MSH6P52701 MIR224-201ENST00000384889 81 ntBASIC-0.23□□□□□ -2.45
MSH6P52701 MIR501-201ENST00000390204 84 ntBASIC-0.23□□□□□ -2.45
MSH6P52701 RNU6-493P-201ENST00000391321 108 ntBASIC-0.23□□□□□ -2.45
MSH6P52701 RNU7-165P-201ENST00000458864 60 ntBASIC-0.23□□□□□ -2.45
MSH6P52701 MIR548H5-201ENST00000580314 60 ntBASIC-0.23□□□□□ -2.45
MSH6P52701 AC098479.1-201ENST00000609225 154 ntBASIC-0.23□□□□□ -2.45
MSH6P52701 SNORA70.25-201ENST00000612741 95 ntBASIC-0.23□□□□□ -2.45
MSH6P52701 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.24□□□□□ -2.45
MSH6P52701 RNA5SP403-201ENST00000363598 108 ntBASIC-0.24□□□□□ -2.45
MSH6P52701 SNORD41.1-201ENST00000391000 69 ntBASIC-0.24□□□□□ -2.45
MSH6P52701 MIR1468-201ENST00000410600 86 ntBASIC-0.24□□□□□ -2.45
MSH6P52701 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.24□□□□□ -2.45
MSH6P52701 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.24□□□□□ -2.45
MSH6P52701 Y_RNA.720-201ENST00000517166 92 ntBASIC-0.24□□□□□ -2.45
MSH6P52701 MIR548AE2-201ENST00000583456 67 ntBASIC-0.24□□□□□ -2.45
MSH6P52701 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 Y_RNA.396-201ENST00000383949 103 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 RNU6-929P-201ENST00000384429 107 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 MIR548L-201ENST00000408303 86 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 MIR548F4-201ENST00000408515 105 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 SNX3P1X-201ENST00000414887 175 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 SNORD127-201ENST00000458892 86 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 AC074198.2-201ENST00000508153 258 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 MIR4308-201ENST00000580634 81 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 U7.6-201ENST00000610841 64 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 uc_338.28-201ENST00000612082 187 ntBASIC-0.25□□□□□ -2.45
MSH6P52701 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.25□□□□□ -2.45
MSH6P52701 Y_RNA.182-201ENST00000363880 111 ntBASIC-0.26□□□□□ -2.45
MSH6P52701 RNU6-275P-201ENST00000364910 107 ntBASIC-0.26□□□□□ -2.45
MSH6P52701 SNORD58.1-201ENST00000391313 66 ntBASIC-0.26□□□□□ -2.45
MSH6P52701 RNU7-159P-201ENST00000459284 62 ntBASIC-0.26□□□□□ -2.45
MSH6P52701 RNU2-35P-201ENST00000516446 142 ntBASIC-0.26□□□□□ -2.45
MSH6P52701 RNU6-1153P-201ENST00000516760 105 ntBASIC-0.26□□□□□ -2.45
MSH6P52701 AC011603.4-201ENST00000611325 277 ntBASIC-0.26□□□□□ -2.45
MSH6P52701 AC105081.1-201ENST00000617727 106 ntBASIC-0.26□□□□□ -2.45
MSH6P52701 RNU6-449P-201ENST00000383914 107 ntBASIC-0.27□□□□□ -2.45
MSH6P52701 RNU6-180P-201ENST00000516697 61 ntBASIC-0.27□□□□□ -2.45
MSH6P52701 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.27□□□□□ -2.45
MSH6P52701 MIR548AX-201ENST00000580117 73 ntBASIC-0.27□□□□□ -2.45
MSH6P52701 MIR3925-201ENST00000584674 77 ntBASIC-0.27□□□□□ -2.45
MSH6P52701 RNU7-10P-201ENST00000607194 63 ntBASIC-0.27□□□□□ -2.45
MSH6P52701 Y_RNA.75-201ENST00000362927 97 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 RNU6-690P-201ENST00000365242 106 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 Y_RNA.521-201ENST00000384560 114 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 MIR635-201ENST00000384830 98 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 MIR548H3-201ENST00000408771 118 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 MIR1270-201ENST00000459320 83 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 RNU7-104P-201ENST00000459398 79 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 RNY1P9-201ENST00000532431 109 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 MIR8064-201ENST00000612863 90 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 AC073869.9-201ENST00000641610 120 ntBASIC-0.28□□□□□ -2.45
MSH6P52701 RNU6-1160P-201ENST00000384546 104 ntBASIC-0.29□□□□□ -2.46
MSH6P52701 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.29□□□□□ -2.46
MSH6P52701 RNU2-38P-201ENST00000410856 79 ntBASIC-0.29□□□□□ -2.46
MSH6P52701 Y_RNA.626-201ENST00000411288 95 ntBASIC-0.29□□□□□ -2.46
MSH6P52701 MIR4677-201ENST00000584153 80 ntBASIC-0.29□□□□□ -2.46
MSH6P52701 U6.106-201ENST00000636360 105 ntBASIC-0.29□□□□□ -2.46
MSH6P52701 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.3□□□□□ -2.46
MSH6P52701 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.3□□□□□ -2.46
MSH6P52701 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.3□□□□□ -2.46
MSH6P52701 RNA5SP163-201ENST00000410304 99 ntBASIC-0.3□□□□□ -2.46
MSH6P52701 TRAJ51-201ENST00000504127 63 ntBASIC-0.3□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 261 ms