Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 RNU6-1321P-201ENST00000390905 107 ntBASIC1.19□□□□□ -2.22
FOXN3O00409 MIR1912-201ENST00000410389 80 ntBASIC1.19□□□□□ -2.22
FOXN3O00409 RNU6-733P-201ENST00000410759 104 ntBASIC1.19□□□□□ -2.22
FOXN3O00409 RNU7-2P-201ENST00000516096 62 ntBASIC1.19□□□□□ -2.22
FOXN3O00409 RNU7-137P-201ENST00000516788 62 ntBASIC1.19□□□□□ -2.22
FOXN3O00409 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.19□□□□□ -2.22
FOXN3O00409 AC012676.2-201ENST00000619258 186 ntBASIC1.19□□□□□ -2.22
FOXN3O00409 AL512310.12-203ENST00000640543 90 ntBASIC1.19□□□□□ -2.22
FOXN3O00409 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.18□□□□□ -2.22
FOXN3O00409 Y_RNA.495-201ENST00000384435 112 ntBASIC1.18□□□□□ -2.22
FOXN3O00409 MIR1285-1-201ENST00000408593 84 ntBASIC1.18□□□□□ -2.22
FOXN3O00409 SNORD83.1-201ENST00000411362 77 ntBASIC1.18□□□□□ -2.22
FOXN3O00409 RPS29P28-201ENST00000446439 141 ntBASIC1.18□□□□□ -2.22
FOXN3O00409 MIR6504-201ENST00000613520 61 ntBASIC1.18□□□□□ -2.22
FOXN3O00409 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.18□□□□□ -2.22
FOXN3O00409 RNU6-766P-201ENST00000362478 107 ntBASIC1.17□□□□□ -2.22
FOXN3O00409 SNORD114-24-201ENST00000365029 72 ntBASIC1.17□□□□□ -2.22
FOXN3O00409 MIR577-201ENST00000385196 96 ntBASIC1.17□□□□□ -2.22
FOXN3O00409 SNORD89-201ENST00000390981 114 ntBASIC1.17□□□□□ -2.22
FOXN3O00409 RNU6-168P-201ENST00000516189 101 ntBASIC1.17□□□□□ -2.22
FOXN3O00409 RNA5SP102-201ENST00000516865 106 ntBASIC1.17□□□□□ -2.22
FOXN3O00409 RNU6-537P-201ENST00000517277 103 ntBASIC1.17□□□□□ -2.22
FOXN3O00409 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.17□□□□□ -2.22
FOXN3O00409 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
FOXN3O00409 MIR30D-201ENST00000362283 70 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 Y_RNA.247-201ENST00000364500 92 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 SNORD115-35-201ENST00000365122 82 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 RNU6-32P-201ENST00000383948 107 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 RNU6-13P-201ENST00000384248 107 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 RNU6-12P-201ENST00000384604 107 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 RNU6-41P-201ENST00000384741 107 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 MIR34C-201ENST00000384831 77 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 MIR200A-201ENST00000384875 90 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 MIR563-201ENST00000385080 79 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 UBL5P1-201ENST00000507979 193 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 MIR376B-201ENST00000614515 100 ntBASIC1.16□□□□□ -2.22
FOXN3O00409 RNY3P2-201ENST00000362918 102 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 RNU6-865P-201ENST00000364772 107 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 MIR518E-201ENST00000385252 88 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 MIR100-201ENST00000385259 80 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 RNU6-795P-201ENST00000516323 103 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 MIR4771-2-201ENST00000577758 74 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 MIR4771-1-201ENST00000582617 74 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 SNORA4-201ENST00000584302 138 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 MIR548Z-201ENST00000584743 97 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 U6.109-201ENST00000636749 87 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 AC091304.10-201ENST00000641554 121 ntBASIC1.15□□□□□ -2.23
FOXN3O00409 RNU6-934P-201ENST00000365154 107 ntBASIC1.14□□□□□ -2.23
FOXN3O00409 RNU6-949P-201ENST00000384040 107 ntBASIC1.14□□□□□ -2.23
FOXN3O00409 RNU6-1201P-201ENST00000384227 107 ntBASIC1.14□□□□□ -2.23
FOXN3O00409 MIR489-201ENST00000384923 84 ntBASIC1.14□□□□□ -2.23
FOXN3O00409 U8.15-201ENST00000390947 134 ntBASIC1.14□□□□□ -2.23
FOXN3O00409 FABP5P4-201ENST00000437203 171 ntBASIC1.14□□□□□ -2.23
FOXN3O00409 RNU7-48P-201ENST00000458875 63 ntBASIC1.14□□□□□ -2.23
FOXN3O00409 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.14□□□□□ -2.23
FOXN3O00409 DEFB131E-201ENST00000532329 154 ntBASIC1.14□□□□□ -2.23
FOXN3O00409 SNORD114-21-201ENST00000606412 72 ntBASIC1.14□□□□□ -2.23
FOXN3O00409 MIR6078-201ENST00000611069 100 ntBASIC1.14□□□□□ -2.23
FOXN3O00409 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.13□□□□□ -2.23
FOXN3O00409 AC023934.1-201ENST00000574529 2389 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 RNU6-832P-201ENST00000363319 107 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 SNORD114-10-201ENST00000363409 72 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 RNU6-1099P-201ENST00000363533 107 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 MIR18B-201ENST00000454574 71 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 Y_RNA.659-201ENST00000515994 113 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 RNU6-904P-201ENST00000516206 101 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 Y_RNA.677-201ENST00000516401 85 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 AC133485.1-201ENST00000567176 124 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 MIR4694-201ENST00000578534 80 ntBASIC1.13□□□□□ -2.23
FOXN3O00409 MIR1-1-201ENST00000362147 71 ntBASIC1.12□□□□□ -2.23
FOXN3O00409 Y_RNA.191-201ENST00000363972 113 ntBASIC1.12□□□□□ -2.23
FOXN3O00409 RNU4-36P-201ENST00000364294 144 ntBASIC1.12□□□□□ -2.23
FOXN3O00409 SNORA72.6-201ENST00000384520 129 ntBASIC1.12□□□□□ -2.23
FOXN3O00409 SNORD93-201ENST00000408813 74 ntBASIC1.12□□□□□ -2.23
FOXN3O00409 MIR4452-201ENST00000583004 71 ntBASIC1.12□□□□□ -2.23
FOXN3O00409 MIR4295-201ENST00000585286 85 ntBASIC1.12□□□□□ -2.23
FOXN3O00409 MIR96-201ENST00000362288 78 ntBASIC1.11□□□□□ -2.23
FOXN3O00409 RNU6-1313P-201ENST00000362622 102 ntBASIC1.11□□□□□ -2.23
FOXN3O00409 RNU6-403P-201ENST00000363163 104 ntBASIC1.11□□□□□ -2.23
FOXN3O00409 RNA5SP133-201ENST00000363368 119 ntBASIC1.11□□□□□ -2.23
FOXN3O00409 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.11□□□□□ -2.23
FOXN3O00409 AC096949.1-201ENST00000412047 152 ntBASIC1.11□□□□□ -2.23
FOXN3O00409 AC138749.4-201ENST00000563970 127 ntBASIC1.11□□□□□ -2.23
FOXN3O00409 AC090897.1-201ENST00000580909 226 ntBASIC1.11□□□□□ -2.23
FOXN3O00409 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.11□□□□□ -2.23
FOXN3O00409 AC012531.4-201ENST00000616509 177 ntBASIC1.11□□□□□ -2.23
FOXN3O00409 Y_RNA.348-201ENST00000365403 103 ntBASIC1.1□□□□□ -2.23
FOXN3O00409 SNORD114-22-201ENST00000365423 72 ntBASIC1.1□□□□□ -2.23
FOXN3O00409 RNU6-1113P-201ENST00000384348 107 ntBASIC1.1□□□□□ -2.23
FOXN3O00409 RNU6-905P-201ENST00000384434 107 ntBASIC1.1□□□□□ -2.23
FOXN3O00409 SNORA25.16-201ENST00000516741 121 ntBASIC1.1□□□□□ -2.23
FOXN3O00409 MIR4661-201ENST00000582720 75 ntBASIC1.1□□□□□ -2.23
FOXN3O00409 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.1□□□□□ -2.23
FOXN3O00409 AL442128.1-201ENST00000615151 90 ntBASIC1.1□□□□□ -2.23
FOXN3O00409 AP001318.4-201ENST00000616637 121 ntBASIC1.1□□□□□ -2.23
FOXN3O00409 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.1□□□□□ -2.23
FOXN3O00409 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 172.7 ms