Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNA5SP264-201ENST00000363115 107 ntBASIC2.53□□□□□ -2
LIMD1Q9UGP4 MIR30A-201ENST00000385092 71 ntBASIC2.53□□□□□ -2
LIMD1Q9UGP4 SNRPGP19-201ENST00000603826 189 ntBASIC2.53□□□□□ -2
LIMD1Q9UGP4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.53□□□□□ -2
LIMD1Q9UGP4 AL353997.5-201ENST00000618886 171 ntBASIC2.53□□□□□ -2
LIMD1Q9UGP4 MIR6516-201ENST00000630554 81 ntBASIC2.53□□□□□ -2
LIMD1Q9UGP4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LIMD1Q9UGP4 Z82195.2-201ENST00000612348 18351 ntBASIC2.52□□□□□ -2.01
LIMD1Q9UGP4 RNU6-652P-201ENST00000365488 107 ntBASIC2.52□□□□□ -2.01
LIMD1Q9UGP4 DEFA7P-201ENST00000382676 285 ntBASIC2.52□□□□□ -2.01
LIMD1Q9UGP4 MIR1236-201ENST00000408340 102 ntBASIC2.52□□□□□ -2.01
LIMD1Q9UGP4 MIR18B-201ENST00000454574 71 ntBASIC2.52□□□□□ -2.01
LIMD1Q9UGP4 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.52□□□□□ -2.01
LIMD1Q9UGP4 AC020891.4-201ENST00000605745 93 ntBASIC2.52□□□□□ -2.01
LIMD1Q9UGP4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LIMD1Q9UGP4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
LIMD1Q9UGP4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
LIMD1Q9UGP4 AC079140.2-201ENST00000506193 142 ntBASIC2.51□□□□□ -2.01
LIMD1Q9UGP4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.51□□□□□ -2.01
LIMD1Q9UGP4 MIR6873-201ENST00000622788 63 ntBASIC2.51□□□□□ -2.01
LIMD1Q9UGP4 FO624990.1-201ENST00000636373 85 ntBASIC2.51□□□□□ -2.01
LIMD1Q9UGP4 SNORD115-27-201ENST00000364430 82 ntBASIC2.5□□□□□ -2.01
LIMD1Q9UGP4 MIR17-201ENST00000385012 84 ntBASIC2.5□□□□□ -2.01
LIMD1Q9UGP4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.5□□□□□ -2.01
LIMD1Q9UGP4 MIR1185-1-201ENST00000408598 86 ntBASIC2.5□□□□□ -2.01
LIMD1Q9UGP4 snoU13.25-201ENST00000458945 104 ntBASIC2.5□□□□□ -2.01
LIMD1Q9UGP4 AC026436.1-201ENST00000510537 270 ntBASIC2.5□□□□□ -2.01
LIMD1Q9UGP4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
LIMD1Q9UGP4 Y_RNA.316-201ENST00000365118 111 ntBASIC2.49□□□□□ -2.01
LIMD1Q9UGP4 RNU6-580P-201ENST00000365159 107 ntBASIC2.49□□□□□ -2.01
LIMD1Q9UGP4 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
LIMD1Q9UGP4 Y_RNA.648-201ENST00000459455 110 ntBASIC2.49□□□□□ -2.01
LIMD1Q9UGP4 AC103810.8-201ENST00000607347 118 ntBASIC2.49□□□□□ -2.01
LIMD1Q9UGP4 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.49□□□□□ -2.01
LIMD1Q9UGP4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
LIMD1Q9UGP4 MIR302D-201ENST00000362275 68 ntBASIC2.48□□□□□ -2.01
LIMD1Q9UGP4 RNU4-58P-201ENST00000363192 141 ntBASIC2.48□□□□□ -2.01
LIMD1Q9UGP4 RNA5SP456-201ENST00000364002 114 ntBASIC2.48□□□□□ -2.01
LIMD1Q9UGP4 RNU6-1296P-201ENST00000383879 107 ntBASIC2.48□□□□□ -2.01
LIMD1Q9UGP4 RNU6-524P-201ENST00000384270 107 ntBASIC2.48□□□□□ -2.01
LIMD1Q9UGP4 SNORA67.3-201ENST00000384366 140 ntBASIC2.48□□□□□ -2.01
LIMD1Q9UGP4 RNU4-83P-201ENST00000410863 133 ntBASIC2.48□□□□□ -2.01
LIMD1Q9UGP4 AC087499.7-201ENST00000441958 109 ntBASIC2.48□□□□□ -2.01
LIMD1Q9UGP4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.48□□□□□ -2.01
LIMD1Q9UGP4 MIR6073-201ENST00000352083 89 ntBASIC2.47□□□□□ -2.01
LIMD1Q9UGP4 SNORD1A-201ENST00000364968 72 ntBASIC2.47□□□□□ -2.01
LIMD1Q9UGP4 RNA5SP181-201ENST00000410246 98 ntBASIC2.47□□□□□ -2.01
LIMD1Q9UGP4 BX276092.1-201ENST00000427368 251 ntBASIC2.47□□□□□ -2.01
LIMD1Q9UGP4 AC245517.4-201ENST00000448601 281 ntBASIC2.47□□□□□ -2.01
LIMD1Q9UGP4 SNORD4B-201ENST00000459083 72 ntBASIC2.47□□□□□ -2.01
LIMD1Q9UGP4 RNA5SP458-201ENST00000516188 119 ntBASIC2.47□□□□□ -2.01
LIMD1Q9UGP4 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.47□□□□□ -2.01
LIMD1Q9UGP4 MIR4662A-201ENST00000637499 67 ntBASIC2.47□□□□□ -2.01
LIMD1Q9UGP4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
LIMD1Q9UGP4 SNORA72.6-201ENST00000384520 129 ntBASIC2.46□□□□□ -2.02
LIMD1Q9UGP4 RNA5SP247-201ENST00000411181 105 ntBASIC2.46□□□□□ -2.02
LIMD1Q9UGP4 HMGN2P23-201ENST00000456759 269 ntBASIC2.46□□□□□ -2.02
LIMD1Q9UGP4 AC010297.1-201ENST00000623948 149 ntBASIC2.46□□□□□ -2.02
LIMD1Q9UGP4 MIR1291-201ENST00000627649 87 ntBASIC2.46□□□□□ -2.02
LIMD1Q9UGP4 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.45□□□□□ -2.02
LIMD1Q9UGP4 RNU6-1194P-201ENST00000516208 104 ntBASIC2.45□□□□□ -2.02
LIMD1Q9UGP4 MIR3937-201ENST00000580135 106 ntBASIC2.45□□□□□ -2.02
LIMD1Q9UGP4 MIR5092-201ENST00000583139 88 ntBASIC2.45□□□□□ -2.02
LIMD1Q9UGP4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
LIMD1Q9UGP4 RNU6-1254P-201ENST00000391266 104 ntBASIC2.44□□□□□ -2.02
LIMD1Q9UGP4 SNORD93-201ENST00000408813 74 ntBASIC2.44□□□□□ -2.02
LIMD1Q9UGP4 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC2.44□□□□□ -2.02
LIMD1Q9UGP4 RNA5SP233-201ENST00000459153 113 ntBASIC2.44□□□□□ -2.02
LIMD1Q9UGP4 SNORA31.11-201ENST00000516528 139 ntBASIC2.44□□□□□ -2.02
LIMD1Q9UGP4 AC140658.3-201ENST00000567603 271 ntBASIC2.44□□□□□ -2.02
LIMD1Q9UGP4 MIR3198-2-201ENST00000577868 80 ntBASIC2.44□□□□□ -2.02
LIMD1Q9UGP4 MIR3664-201ENST00000579074 99 ntBASIC2.44□□□□□ -2.02
LIMD1Q9UGP4 AC016717.2-201ENST00000609089 5141 ntBASIC2.44□□□□□ -2.02
LIMD1Q9UGP4 RNU6-243P-201ENST00000391140 107 ntBASIC2.43□□□□□ -2.02
LIMD1Q9UGP4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.43□□□□□ -2.02
LIMD1Q9UGP4 RPL23AP42-201ENST00000471152 471 ntBASIC2.43□□□□□ -2.02
LIMD1Q9UGP4 MIR4491-201ENST00000581087 68 ntBASIC2.43□□□□□ -2.02
LIMD1Q9UGP4 AL627230.6-201ENST00000611129 280 ntBASIC2.43□□□□□ -2.02
LIMD1Q9UGP4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 Y_RNA.221-201ENST00000364248 96 ntBASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 SNORA64-201ENST00000384674 134 ntBASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 AC005908.1-201ENST00000468701 347 ntBASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 AC019176.1-201ENST00000518519 225 ntBASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
LIMD1Q9UGP4 Y_RNA.164-201ENST00000363709 102 ntBASIC2.41□□□□□ -2.02
LIMD1Q9UGP4 RNU6-654P-201ENST00000364373 107 ntBASIC2.41□□□□□ -2.02
LIMD1Q9UGP4 RNU1-36P-201ENST00000365130 165 ntBASIC2.41□□□□□ -2.02
LIMD1Q9UGP4 RNU7-10P-201ENST00000607194 63 ntBASIC2.41□□□□□ -2.02
LIMD1Q9UGP4 RNU4-32P-201ENST00000363404 141 ntBASIC2.4□□□□□ -2.03
LIMD1Q9UGP4 Y_RNA.338-201ENST00000365320 114 ntBASIC2.4□□□□□ -2.03
LIMD1Q9UGP4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
LIMD1Q9UGP4 uc_338.6-201ENST00000613544 171 ntBASIC2.4□□□□□ -2.03
LIMD1Q9UGP4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
LIMD1Q9UGP4 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.4□□□□□ -2.03
LIMD1Q9UGP4 Y_RNA.588-201ENST00000391254 102 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 222.7 ms