Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.448-201ENST00000384185 108 ntBASIC-3.05□□□□□ -2.9
CCDC88BA6NC98 Y_RNA.613-201ENST00000410726 97 ntBASIC-3.05□□□□□ -2.9
CCDC88BA6NC98 AP002795.1-201ENST00000534879 84 ntBASIC-3.05□□□□□ -2.9
CCDC88BA6NC98 RNU6-95P-201ENST00000384697 107 ntBASIC-3.06□□□□□ -2.9
CCDC88BA6NC98 SNORD115-47-201ENST00000391226 86 ntBASIC-3.06□□□□□ -2.9
CCDC88BA6NC98 Y_RNA.618-201ENST00000410949 107 ntBASIC-3.06□□□□□ -2.9
CCDC88BA6NC98 RNU6-1192P-201ENST00000612197 107 ntBASIC-3.06□□□□□ -2.9
CCDC88BA6NC98 RNU6-489P-201ENST00000618289 107 ntBASIC-3.06□□□□□ -2.9
CCDC88BA6NC98 AP001362.1-201ENST00000625165 124 ntBASIC-3.06□□□□□ -2.9
CCDC88BA6NC98 Y_RNA.66-201ENST00000362862 102 ntBASIC-3.07□□□□□ -2.9
CCDC88BA6NC98 Y_RNA.501-201ENST00000384467 103 ntBASIC-3.07□□□□□ -2.9
CCDC88BA6NC98 RNU6-126P-201ENST00000516685 103 ntBASIC-3.07□□□□□ -2.9
CCDC88BA6NC98 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC-3.07□□□□□ -2.9
CCDC88BA6NC98 Y_RNA.603-201ENST00000410571 108 ntBASIC-3.08□□□□□ -2.9
CCDC88BA6NC98 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC-3.08□□□□□ -2.9
CCDC88BA6NC98 RNU6-276P-201ENST00000516114 96 ntBASIC-3.08□□□□□ -2.9
CCDC88BA6NC98 Y_RNA.698-201ENST00000516798 118 ntBASIC-3.08□□□□□ -2.9
CCDC88BA6NC98 AC097639.2-201ENST00000603159 172 ntBASIC-3.08□□□□□ -2.9
CCDC88BA6NC98 AL021707.8-201ENST00000609428 183 ntBASIC-3.08□□□□□ -2.9
CCDC88BA6NC98 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC-3.08□□□□□ -2.9
CCDC88BA6NC98 AC006927.3-201ENST00000638789 384 ntBASIC-3.08□□□□□ -2.9
CCDC88BA6NC98 RNU6-874P-201ENST00000362390 105 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 RNU6-1290P-201ENST00000362957 109 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 RNU6-1120P-201ENST00000362988 108 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 RNU6-243P-201ENST00000391140 107 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 RNU7-63P-201ENST00000459054 62 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 MIR4748-201ENST00000578076 82 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 AC103591.3-201ENST00000608684 209 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 AP001506.1-201ENST00000615444 211 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 RNU6-1254P-201ENST00000391266 104 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 snoU109.3-201ENST00000459477 145 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 MIR548AE2-201ENST00000583456 67 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 AC099654.14-201ENST00000638599 341 ntBASIC-3.09□□□□□ -2.9
CCDC88BA6NC98 Y_RNA.127-201ENST00000363386 109 ntBASIC-3.1□□□□□ -2.91
CCDC88BA6NC98 RNU6-801P-201ENST00000364087 105 ntBASIC-3.1□□□□□ -2.91
CCDC88BA6NC98 RNU6-647P-201ENST00000364243 107 ntBASIC-3.1□□□□□ -2.91
CCDC88BA6NC98 Y_RNA.348-201ENST00000365403 103 ntBASIC-3.1□□□□□ -2.91
CCDC88BA6NC98 RNU6-144P-201ENST00000383951 107 ntBASIC-3.1□□□□□ -2.91
CCDC88BA6NC98 SNORD37.1-201ENST00000390968 65 ntBASIC-3.1□□□□□ -2.91
CCDC88BA6NC98 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-3.1□□□□□ -2.91
CCDC88BA6NC98 DEFB117-201ENST00000602356 141 ntBASIC-3.1□□□□□ -2.91
CCDC88BA6NC98 RNU6-664P-201ENST00000362381 107 ntBASIC-3.11□□□□□ -2.91
CCDC88BA6NC98 Y_RNA.157-201ENST00000363638 102 ntBASIC-3.11□□□□□ -2.91
CCDC88BA6NC98 SNORD27-201ENST00000363981 72 ntBASIC-3.11□□□□□ -2.91
CCDC88BA6NC98 Y_RNA.257-201ENST00000364596 102 ntBASIC-3.11□□□□□ -2.91
CCDC88BA6NC98 AC009779.6-201ENST00000603972 165 ntBASIC-3.11□□□□□ -2.91
CCDC88BA6NC98 Y_RNA.2-201ENST00000362330 96 ntBASIC-3.12□□□□□ -2.91
CCDC88BA6NC98 RNU6-157P-201ENST00000383957 107 ntBASIC-3.12□□□□□ -2.91
CCDC88BA6NC98 Y_RNA.481-201ENST00000384373 102 ntBASIC-3.12□□□□□ -2.91
CCDC88BA6NC98 Y_RNA.558-201ENST00000384685 113 ntBASIC-3.12□□□□□ -2.91
CCDC88BA6NC98 MIR206-201ENST00000384872 86 ntBASIC-3.12□□□□□ -2.91
CCDC88BA6NC98 MIR1255B2-201ENST00000408618 67 ntBASIC-3.12□□□□□ -2.91
CCDC88BA6NC98 RNU6-1238P-201ENST00000517215 102 ntBASIC-3.12□□□□□ -2.91
CCDC88BA6NC98 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC-3.12□□□□□ -2.91
CCDC88BA6NC98 Y_RNA.120-201ENST00000363304 110 ntBASIC-3.13□□□□□ -2.91
CCDC88BA6NC98 RNU6-254P-201ENST00000363377 107 ntBASIC-3.13□□□□□ -2.91
CCDC88BA6NC98 SNORD101-201ENST00000384027 73 ntBASIC-3.13□□□□□ -2.91
CCDC88BA6NC98 RNU6-308P-201ENST00000390957 107 ntBASIC-3.13□□□□□ -2.91
CCDC88BA6NC98 RNU6-559P-201ENST00000516151 98 ntBASIC-3.13□□□□□ -2.91
CCDC88BA6NC98 RNU6-957P-201ENST00000363652 99 ntBASIC-3.14□□□□□ -2.91
CCDC88BA6NC98 RNU6-38P-201ENST00000384085 107 ntBASIC-3.14□□□□□ -2.91
CCDC88BA6NC98 Y_RNA.482-201ENST00000384377 111 ntBASIC-3.14□□□□□ -2.91
CCDC88BA6NC98 SNORD19-201ENST00000391191 68 ntBASIC-3.14□□□□□ -2.91
CCDC88BA6NC98 MIR4696-201ENST00000581431 70 ntBASIC-3.14□□□□□ -2.91
CCDC88BA6NC98 MIR5197-201ENST00000583721 112 ntBASIC-3.14□□□□□ -2.91
CCDC88BA6NC98 Y_RNA.331-201ENST00000365267 102 ntBASIC-3.15□□□□□ -2.91
CCDC88BA6NC98 RNU6-596P-201ENST00000365395 98 ntBASIC-3.15□□□□□ -2.91
CCDC88BA6NC98 RNA5SP144-201ENST00000410846 116 ntBASIC-3.15□□□□□ -2.91
CCDC88BA6NC98 RNU6-1052P-201ENST00000411398 104 ntBASIC-3.15□□□□□ -2.91
CCDC88BA6NC98 RPS3AP52-201ENST00000435639 297 ntBASIC-3.15□□□□□ -2.91
CCDC88BA6NC98 RNA5SP401-201ENST00000515920 127 ntBASIC-3.15□□□□□ -2.91
CCDC88BA6NC98 RNU6-719P-201ENST00000516671 104 ntBASIC-3.15□□□□□ -2.91
CCDC88BA6NC98 MIR3129-201ENST00000581095 76 ntBASIC-3.15□□□□□ -2.91
CCDC88BA6NC98 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-3.15□□□□□ -2.91
CCDC88BA6NC98 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-3.15□□□□□ -2.91
CCDC88BA6NC98 RNU6-1205P-201ENST00000363625 106 ntBASIC-3.16□□□□□ -2.91
CCDC88BA6NC98 Y_RNA.186-201ENST00000363899 92 ntBASIC-3.16□□□□□ -2.91
CCDC88BA6NC98 RNU4-17P-201ENST00000365598 141 ntBASIC-3.16□□□□□ -2.91
CCDC88BA6NC98 AC087741.2-201ENST00000619415 172 ntBASIC-3.16□□□□□ -2.91
CCDC88BA6NC98 SNORD36A-201ENST00000362874 73 ntBASIC-3.16□□□□□ -2.92
CCDC88BA6NC98 RNU6-306P-201ENST00000384617 107 ntBASIC-3.16□□□□□ -2.92
CCDC88BA6NC98 AC083904.1-201ENST00000487828 231 ntBASIC-3.16□□□□□ -2.92
CCDC88BA6NC98 Y_RNA.677-201ENST00000516401 85 ntBASIC-3.16□□□□□ -2.92
CCDC88BA6NC98 MIR3145-201ENST00000580727 82 ntBASIC-3.17□□□□□ -2.92
CCDC88BA6NC98 MIR4999-201ENST00000585029 91 ntBASIC-3.17□□□□□ -2.92
CCDC88BA6NC98 RNU6-899P-201ENST00000363947 107 ntBASIC-3.18□□□□□ -2.92
CCDC88BA6NC98 PMCHL1-202ENST00000423102 261 ntBASIC-3.18□□□□□ -2.92
CCDC88BA6NC98 MTCO2P24-201ENST00000515611 426 ntBASIC-3.18□□□□□ -2.92
CCDC88BA6NC98 MIR5701-3-201ENST00000578890 82 ntBASIC-3.18□□□□□ -2.92
CCDC88BA6NC98 MIR5701-1-201ENST00000585138 82 ntBASIC-3.18□□□□□ -2.92
CCDC88BA6NC98 MIR5701-2-201ENST00000615634 82 ntBASIC-3.18□□□□□ -2.92
CCDC88BA6NC98 Y_RNA.248-201ENST00000364501 109 ntBASIC-3.19□□□□□ -2.92
CCDC88BA6NC98 Y_RNA.449-201ENST00000384187 102 ntBASIC-3.19□□□□□ -2.92
CCDC88BA6NC98 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC-3.19□□□□□ -2.92
CCDC88BA6NC98 AC083798.1-201ENST00000472671 131 ntBASIC-3.19□□□□□ -2.92
CCDC88BA6NC98 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC-3.19□□□□□ -2.92
CCDC88BA6NC98 FAS-AS1.1-201ENST00000615327 126 ntBASIC-3.19□□□□□ -2.92
CCDC88BA6NC98 MIR548Q-201ENST00000408404 100 ntBASIC-3.2□□□□□ -2.92
CCDC88BA6NC98 AC107399.1-201ENST00000451226 265 ntBASIC-3.2□□□□□ -2.92
Retrieved 100 of 98,524 protein–RNA pairs in 202.8 ms