Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR514B-201ENST00000516774 80 ntBASIC2.37□□□□□ -2.03
CCDC39Q9UFE4 Y_RNA.354-201ENST00000365448 111 ntBASIC2.36□□□□□ -2.03
CCDC39Q9UFE4 RNU6-1067P-201ENST00000384752 107 ntBASIC2.36□□□□□ -2.03
CCDC39Q9UFE4 RNU6-602P-201ENST00000411155 105 ntBASIC2.36□□□□□ -2.03
CCDC39Q9UFE4 AL450471.1-201ENST00000447509 127 ntBASIC2.36□□□□□ -2.03
CCDC39Q9UFE4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC39Q9UFE4 Z97988.1-201ENST00000637697 135 ntBASIC2.36□□□□□ -2.03
CCDC39Q9UFE4 RNU6-1094P-201ENST00000362416 104 ntBASIC2.35□□□□□ -2.03
CCDC39Q9UFE4 RNA5SP133-201ENST00000363368 119 ntBASIC2.35□□□□□ -2.03
CCDC39Q9UFE4 AL356379.1-201ENST00000414105 126 ntBASIC2.35□□□□□ -2.03
CCDC39Q9UFE4 HMGN2P3-201ENST00000433603 273 ntBASIC2.35□□□□□ -2.03
CCDC39Q9UFE4 HMGN2P5-201ENST00000436882 273 ntBASIC2.35□□□□□ -2.03
CCDC39Q9UFE4 UBE2DNL-203ENST00000474922 222 ntBASIC2.35□□□□□ -2.03
CCDC39Q9UFE4 AP001362.1-201ENST00000625165 124 ntBASIC2.35□□□□□ -2.03
CCDC39Q9UFE4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
CCDC39Q9UFE4 AP000648.3-201ENST00000623539 4507 ntBASIC2.34□□□□□ -2.03
CCDC39Q9UFE4 RNU4-32P-201ENST00000363404 141 ntBASIC2.34□□□□□ -2.03
CCDC39Q9UFE4 RNU6-624P-201ENST00000363411 107 ntBASIC2.34□□□□□ -2.03
CCDC39Q9UFE4 RNA5SP425-201ENST00000410336 112 ntBASIC2.34□□□□□ -2.03
CCDC39Q9UFE4 RNA5SP450-201ENST00000411206 102 ntBASIC2.34□□□□□ -2.03
CCDC39Q9UFE4 RNA5SP508-201ENST00000411327 119 ntBASIC2.34□□□□□ -2.03
CCDC39Q9UFE4 RPL23AP6-201ENST00000446637 472 ntBASIC2.34□□□□□ -2.03
CCDC39Q9UFE4 MIR4435-1-201ENST00000582552 80 ntBASIC2.34□□□□□ -2.03
CCDC39Q9UFE4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC2.34□□□□□ -2.03
CCDC39Q9UFE4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC39Q9UFE4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.04
CCDC39Q9UFE4 MIR1283-2-201ENST00000408621 87 ntBASIC2.33□□□□□ -2.04
CCDC39Q9UFE4 SNORD4B-201ENST00000459083 72 ntBASIC2.33□□□□□ -2.04
CCDC39Q9UFE4 SNORA59A-201ENST00000459326 152 ntBASIC2.33□□□□□ -2.04
CCDC39Q9UFE4 RNU6-917P-201ENST00000516294 104 ntBASIC2.33□□□□□ -2.04
CCDC39Q9UFE4 MIR1273D-201ENST00000577266 86 ntBASIC2.33□□□□□ -2.04
CCDC39Q9UFE4 MIR4287-201ENST00000579398 78 ntBASIC2.33□□□□□ -2.04
CCDC39Q9UFE4 AC021506.2-201ENST00000612354 169 ntBASIC2.33□□□□□ -2.04
CCDC39Q9UFE4 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.33□□□□□ -2.04
CCDC39Q9UFE4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
CCDC39Q9UFE4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
CCDC39Q9UFE4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
CCDC39Q9UFE4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
CCDC39Q9UFE4 Y_RNA.500-201ENST00000384466 111 ntBASIC2.32□□□□□ -2.04
CCDC39Q9UFE4 MIR597-201ENST00000384968 97 ntBASIC2.32□□□□□ -2.04
CCDC39Q9UFE4 MIR17-201ENST00000385012 84 ntBASIC2.32□□□□□ -2.04
CCDC39Q9UFE4 MIR660-201ENST00000385235 97 ntBASIC2.32□□□□□ -2.04
CCDC39Q9UFE4 U1.36-201ENST00000620684 176 ntBASIC2.32□□□□□ -2.04
CCDC39Q9UFE4 AL513423.1-201ENST00000621695 132 ntBASIC2.32□□□□□ -2.04
CCDC39Q9UFE4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.32□□□□□ -2.04
CCDC39Q9UFE4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 HSBP1P2-201ENST00000299671 229 ntBASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 RNA5SP276-201ENST00000362580 94 ntBASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 RNY1P13-201ENST00000365030 105 ntBASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 RNU6-1237P-201ENST00000384777 107 ntBASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 RNA5SP489-201ENST00000410986 109 ntBASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 SCARNA18B-201ENST00000458806 135 ntBASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 MIR219B-201ENST00000637023 88 ntBASIC2.31□□□□□ -2.04
CCDC39Q9UFE4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC39Q9UFE4 SNORA74.3-201ENST00000517108 154 ntBASIC2.3□□□□□ -2.04
CCDC39Q9UFE4 RNA5SP437-201ENST00000517249 129 ntBASIC2.3□□□□□ -2.04
CCDC39Q9UFE4 CYP3A52P-201ENST00000563326 91 ntBASIC2.3□□□□□ -2.04
CCDC39Q9UFE4 MIR3134-201ENST00000579433 74 ntBASIC2.3□□□□□ -2.04
CCDC39Q9UFE4 MIRLET7A1-201ENST00000362295 80 ntBASIC2.29□□□□□ -2.04
CCDC39Q9UFE4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
CCDC39Q9UFE4 AC099513.1-201ENST00000490423 301 ntBASIC2.29□□□□□ -2.04
CCDC39Q9UFE4 RNU6-539P-201ENST00000516665 103 ntBASIC2.29□□□□□ -2.04
CCDC39Q9UFE4 RNU6-557P-201ENST00000516842 110 ntBASIC2.29□□□□□ -2.04
CCDC39Q9UFE4 AC012493.3-201ENST00000604494 112 ntBASIC2.29□□□□□ -2.04
CCDC39Q9UFE4 MIR8066-201ENST00000617280 78 ntBASIC2.29□□□□□ -2.04
CCDC39Q9UFE4 SNORA64-201ENST00000384674 134 ntBASIC2.28□□□□□ -2.04
CCDC39Q9UFE4 AL023284.1-201ENST00000403956 276 ntBASIC2.28□□□□□ -2.04
CCDC39Q9UFE4 SNORA3.2-201ENST00000408221 125 ntBASIC2.28□□□□□ -2.04
CCDC39Q9UFE4 RN7SKP223-201ENST00000410582 62 ntBASIC2.28□□□□□ -2.04
CCDC39Q9UFE4 RNU7-85P-201ENST00000458851 63 ntBASIC2.28□□□□□ -2.04
CCDC39Q9UFE4 snoU13.11-201ENST00000459219 104 ntBASIC2.28□□□□□ -2.04
CCDC39Q9UFE4 RNVU1-2-201ENST00000516326 135 ntBASIC2.28□□□□□ -2.04
CCDC39Q9UFE4 AC133485.1-201ENST00000567176 124 ntBASIC2.28□□□□□ -2.04
CCDC39Q9UFE4 AC008133.2-201ENST00000624540 351 ntBASIC2.28□□□□□ -2.04
CCDC39Q9UFE4 SNORA63.2-201ENST00000362603 126 ntBASIC2.27□□□□□ -2.05
CCDC39Q9UFE4 MIR520A-201ENST00000384862 85 ntBASIC2.27□□□□□ -2.05
CCDC39Q9UFE4 RNU2-7P-201ENST00000410794 178 ntBASIC2.27□□□□□ -2.05
CCDC39Q9UFE4 RNU4-83P-201ENST00000410863 133 ntBASIC2.27□□□□□ -2.05
CCDC39Q9UFE4 RPS29P11-201ENST00000496507 171 ntBASIC2.27□□□□□ -2.05
CCDC39Q9UFE4 RNU7-43P-201ENST00000516554 64 ntBASIC2.27□□□□□ -2.05
CCDC39Q9UFE4 MIR4709-201ENST00000577272 72 ntBASIC2.27□□□□□ -2.05
CCDC39Q9UFE4 MIR548AO-201ENST00000579992 96 ntBASIC2.27□□□□□ -2.05
CCDC39Q9UFE4 MIR4764-201ENST00000580680 88 ntBASIC2.27□□□□□ -2.05
CCDC39Q9UFE4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 RNU6-686P-201ENST00000364839 107 ntBASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 SNORA67.3-201ENST00000384366 140 ntBASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 Y_RNA.508-201ENST00000384502 114 ntBASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 SNORA40.18-201ENST00000391200 128 ntBASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 AC019129.1-201ENST00000403786 261 ntBASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 SNORA11.2-201ENST00000408318 127 ntBASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 HMGN2P19-201ENST00000425149 265 ntBASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 AC141846.1-201ENST00000568348 142 ntBASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 AL512598.1-201ENST00000610158 273 ntBASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 Y_RNA.783-201ENST00000613546 102 ntBASIC2.26□□□□□ -2.05
CCDC39Q9UFE4 RNY1P2-201ENST00000364820 117 ntBASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 RNU6-411P-201ENST00000384451 107 ntBASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 RNA5SP212-201ENST00000391223 107 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 212 ms