Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-158P-201ENST00000517104 100 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 AC040926.1-201ENST00000530195 238 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 AL606534.2-204ENST00000635008 178 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.304-201ENST00000365011 112 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-728P-201ENST00000365375 104 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.496-201ENST00000384444 101 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 SNORD116-29-201ENST00000384516 83 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 SPINT5P-201ENST00000448174 155 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 WT1-AS_8.1-201ENST00000615200 275 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.32-201ENST00000362589 110 ntBASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 SNORD83B-201ENST00000386745 93 ntBASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 SNORA53-201ENST00000391141 249 ntBASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 NDUFAF4P4-201ENST00000454883 502 ntBASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 SNORA13-201ENST00000458790 133 ntBASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 RNU7-152P-201ENST00000458982 64 ntBASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-175P-201ENST00000516896 107 ntBASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 RNU7-188P-201ENST00000517063 64 ntBASIC-0.87□□□□□ -2.55
CCDC88AQ3V6T2 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 AC093423.1-201ENST00000440817 142 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.637-201ENST00000459424 114 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 MIR376A1-201ENST00000616574 68 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 U6.109-201ENST00000636749 87 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 RNA5SP403-201ENST00000363598 108 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.440-201ENST00000384120 114 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-24P-201ENST00000384440 107 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 SNORA25.13-201ENST00000516395 103 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-1258P-201ENST00000516911 111 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 MIR4280-201ENST00000582178 76 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.804-201ENST00000615262 101 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 AC002553.4-201ENST00000616896 331 ntBASIC-0.88□□□□□ -2.55
CCDC88AQ3V6T2 UBE2WP1-201ENST00000362030 340 ntBASIC-0.89□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.166-201ENST00000363730 102 ntBASIC-0.89□□□□□ -2.55
CCDC88AQ3V6T2 SNORD24-201ENST00000383884 75 ntBASIC-0.89□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.541-201ENST00000384640 113 ntBASIC-0.89□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.573-201ENST00000384763 105 ntBASIC-0.89□□□□□ -2.55
CCDC88AQ3V6T2 MT-TY-201ENST00000387409 66 ntBASIC-0.89□□□□□ -2.55
CCDC88AQ3V6T2 MIR4500-201ENST00000579472 76 ntBASIC-0.89□□□□□ -2.55
CCDC88AQ3V6T2 MIR4441-201ENST00000582623 100 ntBASIC-0.89□□□□□ -2.55
CCDC88AQ3V6T2 MIR6841-201ENST00000637129 72 ntBASIC-0.89□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 SNORD115-2-201ENST00000362842 82 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 SNORD115-20-201ENST00000365099 82 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-1292P-201ENST00000383856 107 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.432-201ENST00000384087 111 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 SNORA79-201ENST00000408376 140 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.618-201ENST00000410949 107 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-358P-201ENST00000516564 75 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 RNU7-70P-201ENST00000516941 66 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 RNA5SP66-201ENST00000517178 101 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 AC021613.1-201ENST00000623880 111 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 RNY1P2-201ENST00000364820 117 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 MIR626-201ENST00000385032 94 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 MIR526A2-201ENST00000390198 65 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.635-201ENST00000459041 101 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 SNORD67.1-201ENST00000516618 108 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 AC098479.1-201ENST00000609225 154 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 MIR4272-201ENST00000635924 64 ntBASIC-0.9□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.91□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.718-201ENST00000517110 102 ntBASIC-0.91□□□□□ -2.56
CCDC88AQ3V6T2 MIR3920-201ENST00000581751 86 ntBASIC-0.91□□□□□ -2.56
CCDC88AQ3V6T2 MIR5197-201ENST00000583721 112 ntBASIC-0.91□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.28-201ENST00000362554 111 ntBASIC-0.92□□□□□ -2.56
CCDC88AQ3V6T2 RNU1-141P-201ENST00000364623 158 ntBASIC-0.92□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.418-201ENST00000384029 102 ntBASIC-0.92□□□□□ -2.56
CCDC88AQ3V6T2 RNU7-113P-201ENST00000459273 62 ntBASIC-0.92□□□□□ -2.56
CCDC88AQ3V6T2 RNU7-104P-201ENST00000459398 79 ntBASIC-0.92□□□□□ -2.56
CCDC88AQ3V6T2 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.92□□□□□ -2.56
CCDC88AQ3V6T2 SNORA63.7-201ENST00000365579 123 ntBASIC-0.92□□□□□ -2.56
CCDC88AQ3V6T2 MIR1207-201ENST00000408249 87 ntBASIC-0.92□□□□□ -2.56
CCDC88AQ3V6T2 MIR548I2-201ENST00000408348 149 ntBASIC-0.92□□□□□ -2.56
CCDC88AQ3V6T2 RNU7-45P-201ENST00000459460 63 ntBASIC-0.92□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.23-201ENST00000362496 106 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.91-201ENST00000363042 107 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 RNY3P11-201ENST00000364153 102 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.380-201ENST00000365663 111 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 SNORA3B-201ENST00000391305 131 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 AL731563.1-201ENST00000442202 214 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 SNORA27.4-201ENST00000516650 95 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 MTND5P40-201ENST00000559945 246 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 MIR3115-201ENST00000577915 68 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 AL008718.3-201ENST00000610217 321 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-0.93□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.94□□□□□ -2.56
CCDC88AQ3V6T2 RNU6-453P-201ENST00000516819 85 ntBASIC-0.94□□□□□ -2.56
CCDC88AQ3V6T2 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-0.94□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 RNY1P6-201ENST00000384193 109 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.470-201ENST00000384307 117 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 MIR624-201ENST00000385217 97 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 MIR1277-201ENST00000408536 78 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 RNU6-130P-201ENST00000411112 103 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.105-201ENST00000363182 111 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.187-201ENST00000363918 113 ntBASIC-0.95□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 218.4 ms