Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RNA5SP404-201ENST00000517118 132 ntBASIC0.94□□□□□ -2.26
SIX2Q9NPC8 AC036111.3-201ENST00000526389 112 ntBASIC0.94□□□□□ -2.26
SIX2Q9NPC8 AC023827.1-201ENST00000569247 97 ntBASIC0.94□□□□□ -2.26
SIX2Q9NPC8 MIR3133-201ENST00000583157 78 ntBASIC0.94□□□□□ -2.26
SIX2Q9NPC8 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.94□□□□□ -2.26
SIX2Q9NPC8 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
SIX2Q9NPC8 MIR373-201ENST00000362273 69 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 RNU6-774P-201ENST00000363238 107 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 SNORD113.3-201ENST00000364630 78 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 RNU6-580P-201ENST00000365159 107 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 Y_RNA.343-201ENST00000365354 112 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 Y_RNA.354-201ENST00000365448 111 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 RNU6-746P-201ENST00000384112 109 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 SNORA2B-201ENST00000384583 137 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 Y_RNA.568-201ENST00000384742 113 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 MIR618-201ENST00000385287 98 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 RNU6-240P-201ENST00000516098 97 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 Y_RNA.692-201ENST00000516627 105 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 MIR3121-201ENST00000579680 77 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 AC106800.4-201ENST00000614905 153 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 AC010332.2-201ENST00000613083 1904 ntBASIC0.93□□□□□ -2.26
SIX2Q9NPC8 RNY1P10-201ENST00000363268 113 ntBASIC0.92□□□□□ -2.26
SIX2Q9NPC8 RNU1-124P-201ENST00000363861 145 ntBASIC0.92□□□□□ -2.26
SIX2Q9NPC8 RNU6-939P-201ENST00000384634 107 ntBASIC0.92□□□□□ -2.26
SIX2Q9NPC8 RNA5SP144-201ENST00000410846 116 ntBASIC0.92□□□□□ -2.26
SIX2Q9NPC8 RPS23P4-201ENST00000487908 423 ntBASIC0.92□□□□□ -2.26
SIX2Q9NPC8 RNU7-40P-201ENST00000516397 64 ntBASIC0.92□□□□□ -2.26
SIX2Q9NPC8 MIR4698-201ENST00000577795 80 ntBASIC0.92□□□□□ -2.26
SIX2Q9NPC8 Y_RNA.757-201ENST00000578934 114 ntBASIC0.92□□□□□ -2.26
SIX2Q9NPC8 U7.2-201ENST00000607576 63 ntBASIC0.92□□□□□ -2.26
SIX2Q9NPC8 MIR337-201ENST00000362281 93 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 MIR96-201ENST00000362288 78 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 Y_RNA.4-201ENST00000362333 112 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 SNORD12C-201ENST00000386307 89 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 SNORD111-201ENST00000408139 94 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 RNU6-893P-201ENST00000458841 100 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 RNU7-62P-201ENST00000458856 62 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 snoU13.2-201ENST00000459201 104 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 TRMT112P2-201ENST00000512910 132 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 RNU5E-3P-201ENST00000515913 68 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 Y_RNA.676-201ENST00000516393 96 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 RNU6-1258P-201ENST00000516911 111 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 AC133485.4-201ENST00000561835 220 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 AC138907.4-201ENST00000570107 226 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 MIR4781-201ENST00000585250 76 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 AC108081.1-201ENST00000604358 221 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 MIR6740-201ENST00000618268 113 ntBASIC0.91□□□□□ -2.26
SIX2Q9NPC8 Y_RNA.280-201ENST00000364765 112 ntBASIC0.9□□□□□ -2.27
SIX2Q9NPC8 Y_RNA.366-201ENST00000365540 102 ntBASIC0.9□□□□□ -2.27
SIX2Q9NPC8 MIR588-201ENST00000384900 83 ntBASIC0.9□□□□□ -2.27
SIX2Q9NPC8 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.9□□□□□ -2.27
SIX2Q9NPC8 RNU6-257P-201ENST00000410238 98 ntBASIC0.9□□□□□ -2.27
SIX2Q9NPC8 MTND4LP9-201ENST00000427694 174 ntBASIC0.9□□□□□ -2.27
SIX2Q9NPC8 OR2A41P-201ENST00000473586 105 ntBASIC0.9□□□□□ -2.27
SIX2Q9NPC8 MIR4305-201ENST00000583252 102 ntBASIC0.9□□□□□ -2.27
SIX2Q9NPC8 AC021443.1-201ENST00000604478 211 ntBASIC0.9□□□□□ -2.27
SIX2Q9NPC8 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.9□□□□□ -2.27
SIX2Q9NPC8 Y_RNA.171-201ENST00000363760 102 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 SNORD50.2-201ENST00000365465 70 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 RNU6-187P-201ENST00000384139 106 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 MIR563-201ENST00000385080 79 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 SNORA40-201ENST00000388090 126 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 AL022718.1-201ENST00000412004 84 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 RNU6-351P-201ENST00000516097 100 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 RNU2-35P-201ENST00000516446 142 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.89□□□□□ -2.27
SIX2Q9NPC8 RNU6-94P-201ENST00000607728 107 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 uc_338.6-201ENST00000613544 171 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 AC012676.2-201ENST00000619258 186 ntBASIC0.89□□□□□ -2.27
SIX2Q9NPC8 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
SIX2Q9NPC8 Y_RNA.114-201ENST00000363265 113 ntBASIC0.88□□□□□ -2.27
SIX2Q9NPC8 SNORD114-2-201ENST00000363953 78 ntBASIC0.88□□□□□ -2.27
SIX2Q9NPC8 Y_RNA.294-201ENST00000364916 102 ntBASIC0.88□□□□□ -2.27
SIX2Q9NPC8 MIR200A-201ENST00000384875 90 ntBASIC0.88□□□□□ -2.27
SIX2Q9NPC8 MIR548M-201ENST00000408260 86 ntBASIC0.88□□□□□ -2.27
SIX2Q9NPC8 snoU13.21-201ENST00000459368 105 ntBASIC0.88□□□□□ -2.27
SIX2Q9NPC8 SNORD124-201ENST00000459577 104 ntBASIC0.88□□□□□ -2.27
SIX2Q9NPC8 AC113410.1-201ENST00000505029 247 ntBASIC0.88□□□□□ -2.27
SIX2Q9NPC8 AL137067.1-201ENST00000615933 120 ntBASIC0.88□□□□□ -2.27
SIX2Q9NPC8 TUG1_4.1-201ENST00000619464 181 ntBASIC0.88□□□□□ -2.27
SIX2Q9NPC8 MIR613-201ENST00000385248 95 ntBASIC0.87□□□□□ -2.27
SIX2Q9NPC8 Y_RNA.586-201ENST00000391146 98 ntBASIC0.87□□□□□ -2.27
SIX2Q9NPC8 RNU6-1165P-201ENST00000410119 107 ntBASIC0.87□□□□□ -2.27
SIX2Q9NPC8 SUMO1P3-201ENST00000439961 304 ntBASIC0.87□□□□□ -2.27
SIX2Q9NPC8 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.87□□□□□ -2.27
SIX2Q9NPC8 RNU7-164P-201ENST00000459221 62 ntBASIC0.87□□□□□ -2.27
SIX2Q9NPC8 RNU7-113P-201ENST00000459273 62 ntBASIC0.87□□□□□ -2.27
SIX2Q9NPC8 RNU7-123P-201ENST00000515911 60 ntBASIC0.87□□□□□ -2.27
SIX2Q9NPC8 MIR6857-201ENST00000613267 93 ntBASIC0.87□□□□□ -2.27
SIX2Q9NPC8 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
SIX2Q9NPC8 SNORD115-2-201ENST00000362842 82 ntBASIC0.86□□□□□ -2.27
SIX2Q9NPC8 Y_RNA.164-201ENST00000363709 102 ntBASIC0.86□□□□□ -2.27
SIX2Q9NPC8 RNU6-647P-201ENST00000364243 107 ntBASIC0.86□□□□□ -2.27
SIX2Q9NPC8 RNU6-1187P-201ENST00000364771 110 ntBASIC0.86□□□□□ -2.27
SIX2Q9NPC8 Y_RNA.298-201ENST00000364960 107 ntBASIC0.86□□□□□ -2.27
SIX2Q9NPC8 SNORD115-20-201ENST00000365099 82 ntBASIC0.86□□□□□ -2.27
SIX2Q9NPC8 Y_RNA.470-201ENST00000384307 117 ntBASIC0.86□□□□□ -2.27
SIX2Q9NPC8 RNU6-994P-201ENST00000410507 111 ntBASIC0.86□□□□□ -2.27
SIX2Q9NPC8 AL512326.2-201ENST00000426359 151 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 171.1 ms