Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RNY1P6-201ENST00000384193 109 ntBASIC0.66□□□□□ -2.3
CHMP1AQ9HD42 RNU6-239P-201ENST00000390990 99 ntBASIC0.66□□□□□ -2.3
CHMP1AQ9HD42 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.66□□□□□ -2.3
CHMP1AQ9HD42 RNA5SP222-201ENST00000411039 105 ntBASIC0.66□□□□□ -2.3
CHMP1AQ9HD42 RNU7-121P-201ENST00000516604 62 ntBASIC0.66□□□□□ -2.3
CHMP1AQ9HD42 RNU6-861P-201ENST00000516745 106 ntBASIC0.66□□□□□ -2.3
CHMP1AQ9HD42 snoU13.31-201ENST00000607291 104 ntBASIC0.66□□□□□ -2.3
CHMP1AQ9HD42 RNY1P11-201ENST00000363759 113 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 RNU6-818P-201ENST00000364837 108 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.357-201ENST00000365487 109 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 RNY1P8-201ENST00000383970 114 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.497-201ENST00000384447 98 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 SNORA75.5-201ENST00000391291 81 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 RNU6-588P-201ENST00000410281 105 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 RNA5SP237-201ENST00000410414 113 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 RNU7-102P-201ENST00000458948 62 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 RNU7-156P-201ENST00000517214 74 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 AC141846.1-201ENST00000568348 142 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.757-201ENST00000578934 114 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 SNORA4-201ENST00000584302 138 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 SNORD92-201ENST00000585078 85 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 MIR3658-201ENST00000636291 56 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 MIR6844-201ENST00000637122 62 ntBASIC0.65□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.171-201ENST00000363760 102 ntBASIC0.64□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.257-201ENST00000364596 102 ntBASIC0.64□□□□□ -2.31
CHMP1AQ9HD42 RNU6-342P-201ENST00000384521 104 ntBASIC0.64□□□□□ -2.31
CHMP1AQ9HD42 RNA5SP144-201ENST00000410846 116 ntBASIC0.64□□□□□ -2.31
CHMP1AQ9HD42 RNU2-60P-201ENST00000517290 128 ntBASIC0.64□□□□□ -2.31
CHMP1AQ9HD42 MIR3646-201ENST00000578301 84 ntBASIC0.64□□□□□ -2.31
CHMP1AQ9HD42 AC104984.5-201ENST00000586878 94 ntBASIC0.64□□□□□ -2.31
CHMP1AQ9HD42 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.29-201ENST00000362570 113 ntBASIC0.63□□□□□ -2.31
CHMP1AQ9HD42 RNU6-364P-201ENST00000384387 107 ntBASIC0.63□□□□□ -2.31
CHMP1AQ9HD42 SNORA18-201ENST00000384416 132 ntBASIC0.63□□□□□ -2.31
CHMP1AQ9HD42 MTND5P15-201ENST00000434246 349 ntBASIC0.63□□□□□ -2.31
CHMP1AQ9HD42 RNU6-113P-201ENST00000516653 101 ntBASIC0.63□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.700-201ENST00000516806 100 ntBASIC0.63□□□□□ -2.31
CHMP1AQ9HD42 MIR3612-201ENST00000579753 87 ntBASIC0.63□□□□□ -2.31
CHMP1AQ9HD42 AC090897.1-201ENST00000580909 226 ntBASIC0.63□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.441-201ENST00000384123 112 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 U8.15-201ENST00000390947 134 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 SNORD93-201ENST00000408813 74 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 RNU6-447P-201ENST00000410293 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 RNU6-1118P-201ENST00000410382 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 RNU6-1076P-201ENST00000410397 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 RNU6-355P-201ENST00000410427 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 RNU6-791P-201ENST00000410467 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 RNU6-705P-201ENST00000410601 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 RNU6-1100P-201ENST00000410691 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 RNU6-860P-201ENST00000410860 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 RNU6-1217P-201ENST00000411276 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 RNU6-785P-201ENST00000411324 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 AC096949.1-201ENST00000412047 152 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 SNORA81.3-201ENST00000517283 198 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 U6.90-201ENST00000614007 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 AC004792.1-201ENST00000614523 137 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 U6.70-201ENST00000620287 104 ntBASIC0.62□□□□□ -2.31
CHMP1AQ9HD42 MIR18A-201ENST00000362310 71 ntBASIC0.61□□□□□ -2.31
CHMP1AQ9HD42 RNU6-1318P-201ENST00000365389 103 ntBASIC0.61□□□□□ -2.31
CHMP1AQ9HD42 SNORA36.2-201ENST00000384004 127 ntBASIC0.61□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.785-201ENST00000384290 109 ntBASIC0.61□□□□□ -2.31
CHMP1AQ9HD42 RNU6-893P-201ENST00000458841 100 ntBASIC0.61□□□□□ -2.31
CHMP1AQ9HD42 MIR3973-201ENST00000579824 107 ntBASIC0.61□□□□□ -2.31
CHMP1AQ9HD42 DNAJC19P2-201ENST00000593340 302 ntBASIC0.61□□□□□ -2.31
CHMP1AQ9HD42 AL359821.1-201ENST00000605519 182 ntBASIC0.61□□□□□ -2.31
CHMP1AQ9HD42 MIR8066-201ENST00000617280 78 ntBASIC0.61□□□□□ -2.31
CHMP1AQ9HD42 uc_338.17-201ENST00000619633 179 ntBASIC0.61□□□□□ -2.31
CHMP1AQ9HD42 RNU6-392P-201ENST00000364926 101 ntBASIC0.6□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.470-201ENST00000384307 117 ntBASIC0.6□□□□□ -2.31
CHMP1AQ9HD42 SNORD100-201ENST00000408573 76 ntBASIC0.6□□□□□ -2.31
CHMP1AQ9HD42 AC074198.2-201ENST00000508153 258 ntBASIC0.6□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.662-201ENST00000516028 97 ntBASIC0.6□□□□□ -2.31
CHMP1AQ9HD42 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.6□□□□□ -2.31
CHMP1AQ9HD42 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.6□□□□□ -2.31
CHMP1AQ9HD42 RNY1P13-201ENST00000365030 105 ntBASIC0.59□□□□□ -2.31
CHMP1AQ9HD42 RNU6-949P-201ENST00000384040 107 ntBASIC0.59□□□□□ -2.31
CHMP1AQ9HD42 Y_RNA.588-201ENST00000391254 102 ntBASIC0.59□□□□□ -2.31
CHMP1AQ9HD42 RNU4-83P-201ENST00000410863 133 ntBASIC0.59□□□□□ -2.31
CHMP1AQ9HD42 AC108729.3-201ENST00000513484 108 ntBASIC0.59□□□□□ -2.31
CHMP1AQ9HD42 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 Y_RNA.42-201ENST00000362660 108 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 RNU6-508P-201ENST00000363231 103 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 Y_RNA.251-201ENST00000364551 99 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 RNU6-690P-201ENST00000365242 106 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 SNORD37.2-201ENST00000391075 66 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 RNU6-1086P-201ENST00000410930 100 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 RNU6-1135P-201ENST00000411083 103 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 AC002350.1-201ENST00000490759 375 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 TRMT112P2-201ENST00000512910 132 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 AL590095.2-201ENST00000604136 117 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 MIR6835-201ENST00000621552 64 ntBASIC0.58□□□□□ -2.32
CHMP1AQ9HD42 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.57□□□□□ -2.32
CHMP1AQ9HD42 Y_RNA.120-201ENST00000363304 110 ntBASIC0.57□□□□□ -2.32
CHMP1AQ9HD42 Y_RNA.272-201ENST00000364696 102 ntBASIC0.57□□□□□ -2.32
CHMP1AQ9HD42 RNU6-945P-201ENST00000383947 107 ntBASIC0.57□□□□□ -2.32
CHMP1AQ9HD42 MIR140-201ENST00000385282 100 ntBASIC0.57□□□□□ -2.32
CHMP1AQ9HD42 RNU6-733P-201ENST00000410759 104 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 230.8 ms