Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 RNY4P3-201ENST00000365254 95 ntBASIC3.76□□□□□ -1.81
TRIM35Q9UPQ4 SNORA9.2-201ENST00000365361 133 ntBASIC3.76□□□□□ -1.81
TRIM35Q9UPQ4 MIR660-201ENST00000385235 97 ntBASIC3.76□□□□□ -1.81
TRIM35Q9UPQ4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
TRIM35Q9UPQ4 Y_RNA.606-201ENST00000410579 103 ntBASIC3.76□□□□□ -1.81
TRIM35Q9UPQ4 MIR5047-201ENST00000579212 100 ntBASIC3.76□□□□□ -1.81
TRIM35Q9UPQ4 AL137790.1-201ENST00000634283 177 ntBASIC3.76□□□□□ -1.81
TRIM35Q9UPQ4 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
TRIM35Q9UPQ4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
TRIM35Q9UPQ4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 RNA5SP295-201ENST00000362655 121 ntBASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 RNU6-851P-201ENST00000384565 107 ntBASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 SCARNA16.3-201ENST00000516595 184 ntBASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 SCARNA13-201ENST00000516672 275 ntBASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 MIR5094-201ENST00000578766 85 ntBASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 MIR4764-201ENST00000580680 88 ntBASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
TRIM35Q9UPQ4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.74□□□□□ -1.81
TRIM35Q9UPQ4 SNORD113.1-201ENST00000363280 73 ntBASIC3.74□□□□□ -1.81
TRIM35Q9UPQ4 RNU7-170P-201ENST00000459303 61 ntBASIC3.74□□□□□ -1.81
TRIM35Q9UPQ4 AC006386.2-201ENST00000624491 75 ntBASIC3.74□□□□□ -1.81
TRIM35Q9UPQ4 AC012005.1-201ENST00000624575 75 ntBASIC3.74□□□□□ -1.81
TRIM35Q9UPQ4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
TRIM35Q9UPQ4 RNU6-220P-201ENST00000390919 107 ntBASIC3.73□□□□□ -1.81
TRIM35Q9UPQ4 SNORA40.6-201ENST00000391153 128 ntBASIC3.73□□□□□ -1.81
TRIM35Q9UPQ4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC3.73□□□□□ -1.81
TRIM35Q9UPQ4 MIR2113-201ENST00000459007 91 ntBASIC3.73□□□□□ -1.81
TRIM35Q9UPQ4 AL096861.1-201ENST00000610899 123 ntBASIC3.73□□□□□ -1.81
TRIM35Q9UPQ4 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
TRIM35Q9UPQ4 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
TRIM35Q9UPQ4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.72□□□□□ -1.81
TRIM35Q9UPQ4 ARF4P2-201ENST00000430209 526 ntBASIC3.72□□□□□ -1.81
TRIM35Q9UPQ4 AC022018.1-201ENST00000430685 241 ntBASIC3.72□□□□□ -1.81
TRIM35Q9UPQ4 AP004217.1-201ENST00000480579 346 ntBASIC3.72□□□□□ -1.81
TRIM35Q9UPQ4 Y_RNA.722-201ENST00000517279 114 ntBASIC3.72□□□□□ -1.81
TRIM35Q9UPQ4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
TRIM35Q9UPQ4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
TRIM35Q9UPQ4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
TRIM35Q9UPQ4 SNORD6-201ENST00000365444 73 ntBASIC3.71□□□□□ -1.82
TRIM35Q9UPQ4 RNU7-106P-201ENST00000459514 67 ntBASIC3.71□□□□□ -1.82
TRIM35Q9UPQ4 AC021506.2-201ENST00000612354 169 ntBASIC3.71□□□□□ -1.82
TRIM35Q9UPQ4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
TRIM35Q9UPQ4 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
TRIM35Q9UPQ4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
TRIM35Q9UPQ4 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
TRIM35Q9UPQ4 RNU6-525P-201ENST00000363685 104 ntBASIC3.7□□□□□ -1.82
TRIM35Q9UPQ4 RNU1-112P-201ENST00000364401 164 ntBASIC3.7□□□□□ -1.82
TRIM35Q9UPQ4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.7□□□□□ -1.82
TRIM35Q9UPQ4 ZNF209P-201ENST00000593450 2304 ntBASIC3.7□□□□□ -1.82
TRIM35Q9UPQ4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
TRIM35Q9UPQ4 MAPK10-322ENST00000641485 4530 ntBASIC3.69□□□□□ -1.82
TRIM35Q9UPQ4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TRIM35Q9UPQ4 RNU1-58P-201ENST00000362413 163 ntBASIC3.69□□□□□ -1.82
TRIM35Q9UPQ4 MIR4474-201ENST00000579189 78 ntBASIC3.69□□□□□ -1.82
TRIM35Q9UPQ4 AC012531.5-201ENST00000611375 151 ntBASIC3.69□□□□□ -1.82
TRIM35Q9UPQ4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
TRIM35Q9UPQ4 MIR520C-201ENST00000385005 87 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 COTL1P1-201ENST00000422309 375 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 AC011753.1-201ENST00000451001 220 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 AL691482.2-201ENST00000457453 84 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 snoU13.2-201ENST00000459201 104 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 RPS29P12-201ENST00000460178 152 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 AC003982.1-202ENST00000469928 248 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 AC107016.2-201ENST00000547968 190 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 MIR3935-201ENST00000583472 104 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 U4.3-201ENST00000621047 82 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 MIR4251-201ENST00000635819 61 ntBASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
TRIM35Q9UPQ4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM35Q9UPQ4 MIR512-1-201ENST00000384913 84 ntBASIC3.67□□□□□ -1.82
TRIM35Q9UPQ4 SNORD59.2-201ENST00000516873 68 ntBASIC3.67□□□□□ -1.82
TRIM35Q9UPQ4 SCARNA4.1-201ENST00000628597 123 ntBASIC3.67□□□□□ -1.82
TRIM35Q9UPQ4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM35Q9UPQ4 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM35Q9UPQ4 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
TRIM35Q9UPQ4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
TRIM35Q9UPQ4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 Y_RNA.239-201ENST00000364444 113 ntBASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 RNU6-604P-201ENST00000390917 100 ntBASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 RNU6-808P-201ENST00000391233 108 ntBASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 RPS27P16-201ENST00000425758 201 ntBASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 MIR3186-201ENST00000577404 85 ntBASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 SNORA4-201ENST00000584302 138 ntBASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 U6.81-201ENST00000612550 106 ntBASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 U6.98-201ENST00000637157 84 ntBASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
TRIM35Q9UPQ4 AC093908.1-201ENST00000623125 8092 ntBASIC3.65□□□□□ -1.82
TRIM35Q9UPQ4 RNU6-1187P-201ENST00000364771 110 ntBASIC3.65□□□□□ -1.83
TRIM35Q9UPQ4 SNORD63B-201ENST00000411005 70 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms