Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 U7.7-201ENST00000459276 60 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 RPS29P1-201ENST00000465274 159 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 MIR3973-201ENST00000579824 107 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 MIR5197-201ENST00000583721 112 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 Z97988.1-201ENST00000637697 135 ntBASIC0.72□□□□□ -2.29
NKX6-3A6NJ46 Y_RNA.121-201ENST00000363309 113 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 Y_RNA.412-201ENST00000384001 104 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 RNU6-643P-201ENST00000384018 107 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 Y_RNA.542-201ENST00000384641 111 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 MIR588-201ENST00000384900 83 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 RNU6-602P-201ENST00000411155 105 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 AC022559.1-201ENST00000520905 205 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 FAM71BP1-201ENST00000604431 523 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 MIR6740-201ENST00000618268 113 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 MIR6788-201ENST00000618842 66 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 AC091932.4-201ENST00000623386 200 ntBASIC0.71□□□□□ -2.3
NKX6-3A6NJ46 MIR377-201ENST00000362145 69 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 MIR411-201ENST00000362239 96 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 RNU6-978P-201ENST00000364371 103 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 Y_RNA.521-201ENST00000384560 114 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 RNU6-918P-201ENST00000391219 106 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 MIR1827-201ENST00000408549 66 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 RNU6-1110P-201ENST00000516462 101 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 RNU7-70P-201ENST00000516941 66 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 AC004817.2-201ENST00000561794 651 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 AL353765.1-201ENST00000605514 183 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 AL136317.1-201ENST00000612653 226 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 MIR6866-201ENST00000638146 69 ntBASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.7□□□□□ -2.3
NKX6-3A6NJ46 HSBP1P2-201ENST00000299671 229 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 RNU6-275P-201ENST00000364910 107 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 RNU6-580P-201ENST00000365159 107 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 Y_RNA.489-201ENST00000384410 101 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 RNU6-1237P-201ENST00000384777 107 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 MIR520F-201ENST00000384824 87 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 MIR548J-201ENST00000408833 112 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 RPS26P5-201ENST00000418544 335 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 RNU7-80P-201ENST00000459562 61 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 RNU6-977P-201ENST00000516411 103 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 RNU6-1271P-201ENST00000517049 105 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 AC130289.1-201ENST00000577321 73 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 MIR4698-201ENST00000577795 80 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 AC011195.1-201ENST00000578177 177 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 AC025627.3-201ENST00000582078 182 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 MIR151B-201ENST00000584249 96 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 AL365205.2-201ENST00000594586 68 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 RMST_2.1-201ENST00000617263 136 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 MIR6717-201ENST00000622747 73 ntBASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
NKX6-3A6NJ46 RNU6-1020P-201ENST00000363684 107 ntBASIC0.68□□□□□ -2.3
NKX6-3A6NJ46 RNU4-16P-201ENST00000364737 141 ntBASIC0.68□□□□□ -2.3
NKX6-3A6NJ46 RNU6-597P-201ENST00000365620 102 ntBASIC0.68□□□□□ -2.3
NKX6-3A6NJ46 RNU6-1292P-201ENST00000383856 107 ntBASIC0.68□□□□□ -2.3
NKX6-3A6NJ46 SNORD105-201ENST00000386910 85 ntBASIC0.68□□□□□ -2.3
NKX6-3A6NJ46 AL606490.4-201ENST00000423117 127 ntBASIC0.68□□□□□ -2.3
NKX6-3A6NJ46 AL078603.1-201ENST00000603824 313 ntBASIC0.68□□□□□ -2.3
NKX6-3A6NJ46 RNU6-369P-201ENST00000362515 102 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 Y_RNA.188-201ENST00000363952 111 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 RNY1-201ENST00000364228 113 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 Y_RNA.274-201ENST00000364714 101 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 MIR520H-201ENST00000385126 88 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 RNU6-1165P-201ENST00000410119 107 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 RNA5SP127-201ENST00000411051 133 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 AC113410.1-201ENST00000505029 247 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 RNA5SP220-201ENST00000516298 104 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 RNU6-1149P-201ENST00000516810 97 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 AC020891.4-201ENST00000605745 93 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 AC104465.1-201ENST00000611365 139 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 AC078938.1-201ENST00000620993 318 ntBASIC0.67□□□□□ -2.3
NKX6-3A6NJ46 SNORA25.7-201ENST00000364375 127 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 RNU1-133P-201ENST00000364867 167 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 Y_RNA.454-201ENST00000384224 113 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 SNORA26.6-201ENST00000391256 115 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 RNA5SP222-201ENST00000411039 105 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 snoU13.18-201ENST00000459483 104 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 RNU6-351P-201ENST00000516097 100 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 RNU6-1219P-201ENST00000516143 112 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 RNU6-388P-201ENST00000517012 105 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 RNU6-389P-201ENST00000517048 105 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 RNU6-1223P-201ENST00000517124 104 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 CYP3A137P-201ENST00000562436 69 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 AC009779.6-201ENST00000603972 165 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.66□□□□□ -2.3
NKX6-3A6NJ46 Y_RNA.75-201ENST00000362927 97 ntBASIC0.65□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.297-201ENST00000364950 91 ntBASIC0.65□□□□□ -2.31
NKX6-3A6NJ46 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.65□□□□□ -2.31
NKX6-3A6NJ46 AC004941.2-201ENST00000427009 228 ntBASIC0.65□□□□□ -2.31
NKX6-3A6NJ46 snoU13.2-201ENST00000459201 104 ntBASIC0.65□□□□□ -2.31
NKX6-3A6NJ46 MRPS18CP4-201ENST00000535821 231 ntBASIC0.65□□□□□ -2.31
NKX6-3A6NJ46 MIR4676-201ENST00000583078 72 ntBASIC0.65□□□□□ -2.31
NKX6-3A6NJ46 AC022709.1-201ENST00000615967 87 ntBASIC0.65□□□□□ -2.31
NKX6-3A6NJ46 MTND5P32-201ENST00000560711 1802 ntBASIC0.65□□□□□ -2.31
NKX6-3A6NJ46 RNU6-379P-201ENST00000363813 104 ntBASIC0.64□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.354-201ENST00000365448 111 ntBASIC0.64□□□□□ -2.31
NKX6-3A6NJ46 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.401-201ENST00000383965 117 ntBASIC0.64□□□□□ -2.31
NKX6-3A6NJ46 SNORA36.2-201ENST00000384004 127 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 172.5 ms