Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
PCDHGA3Q9Y5H0 RNU6-746P-201ENST00000384112 109 ntBASIC1.59□□□□□ -2.15
PCDHGA3Q9Y5H0 MIR570-201ENST00000384917 97 ntBASIC1.59□□□□□ -2.15
PCDHGA3Q9Y5H0 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.59□□□□□ -2.15
PCDHGA3Q9Y5H0 AC245047.7-201ENST00000440265 293 ntBASIC1.59□□□□□ -2.15
PCDHGA3Q9Y5H0 RNU6-893P-201ENST00000458841 100 ntBASIC1.59□□□□□ -2.15
PCDHGA3Q9Y5H0 RNU2-11P-201ENST00000459191 187 ntBASIC1.59□□□□□ -2.15
PCDHGA3Q9Y5H0 RNU6-970P-201ENST00000516312 107 ntBASIC1.59□□□□□ -2.15
PCDHGA3Q9Y5H0 MTND5P41-201ENST00000517498 206 ntBASIC1.59□□□□□ -2.15
PCDHGA3Q9Y5H0 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.59□□□□□ -2.15
PCDHGA3Q9Y5H0 AC011603.4-201ENST00000611325 277 ntBASIC1.59□□□□□ -2.15
PCDHGA3Q9Y5H0 Y_RNA.251-201ENST00000364551 99 ntBASIC1.58□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU6-1336P-201ENST00000383886 109 ntBASIC1.58□□□□□ -2.16
PCDHGA3Q9Y5H0 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.58□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU6-113P-201ENST00000516653 101 ntBASIC1.58□□□□□ -2.16
PCDHGA3Q9Y5H0 AC091932.4-201ENST00000623386 200 ntBASIC1.58□□□□□ -2.16
PCDHGA3Q9Y5H0 AP001340.1-201ENST00000624405 217 ntBASIC1.58□□□□□ -2.16
PCDHGA3Q9Y5H0 MIR376A2-201ENST00000636782 80 ntBASIC1.58□□□□□ -2.16
PCDHGA3Q9Y5H0 MIR342-201ENST00000362212 99 ntBASIC1.57□□□□□ -2.16
PCDHGA3Q9Y5H0 RNA5SP264-201ENST00000363115 107 ntBASIC1.57□□□□□ -2.16
PCDHGA3Q9Y5H0 AL603914.1-201ENST00000401964 204 ntBASIC1.57□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU7-95P-201ENST00000459222 64 ntBASIC1.57□□□□□ -2.16
PCDHGA3Q9Y5H0 Y_RNA.703-201ENST00000516846 111 ntBASIC1.57□□□□□ -2.16
PCDHGA3Q9Y5H0 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
PCDHGA3Q9Y5H0 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
PCDHGA3Q9Y5H0 AL596211.1-201ENST00000569873 2277 ntBASIC1.56□□□□□ -2.16
PCDHGA3Q9Y5H0 Y_RNA.354-201ENST00000365448 111 ntBASIC1.56□□□□□ -2.16
PCDHGA3Q9Y5H0 SNORA20-201ENST00000384662 132 ntBASIC1.56□□□□□ -2.16
PCDHGA3Q9Y5H0 AC009474.2-201ENST00000451383 136 ntBASIC1.56□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU7-197P-201ENST00000458836 62 ntBASIC1.56□□□□□ -2.16
PCDHGA3Q9Y5H0 TRMT112P2-201ENST00000512910 132 ntBASIC1.56□□□□□ -2.16
PCDHGA3Q9Y5H0 PRELID3BP2-201ENST00000605362 201 ntBASIC1.56□□□□□ -2.16
PCDHGA3Q9Y5H0 AL161722.3-201ENST00000605789 2983 ntBASIC1.56□□□□□ -2.16
PCDHGA3Q9Y5H0 MIR103A2-201ENST00000362154 78 ntBASIC1.55□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU6-396P-201ENST00000365369 105 ntBASIC1.55□□□□□ -2.16
PCDHGA3Q9Y5H0 Y_RNA.506-201ENST00000384494 102 ntBASIC1.55□□□□□ -2.16
PCDHGA3Q9Y5H0 MIR548M-201ENST00000408260 86 ntBASIC1.55□□□□□ -2.16
PCDHGA3Q9Y5H0 MIR1287-201ENST00000408492 90 ntBASIC1.55□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU6-955P-201ENST00000410497 104 ntBASIC1.55□□□□□ -2.16
PCDHGA3Q9Y5H0 SNORA31.2-201ENST00000516019 134 ntBASIC1.55□□□□□ -2.16
PCDHGA3Q9Y5H0 SNORA25.12-201ENST00000516202 82 ntBASIC1.55□□□□□ -2.16
PCDHGA3Q9Y5H0 AP001328.1-201ENST00000528550 176 ntBASIC1.55□□□□□ -2.16
PCDHGA3Q9Y5H0 SNORD53B-201ENST00000577887 78 ntBASIC1.55□□□□□ -2.16
PCDHGA3Q9Y5H0 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 SNORA1.1-201ENST00000364671 133 ntBASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 RNA5SP236-201ENST00000516169 116 ntBASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 Y_RNA.692-201ENST00000516627 105 ntBASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 MIR2115-201ENST00000516657 100 ntBASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 AP003716.2-201ENST00000528260 108 ntBASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 Y_RNA.757-201ENST00000578934 114 ntBASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 AL020996.3-201ENST00000606617 222 ntBASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 MIR8055-201ENST00000610739 97 ntBASIC1.54□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU6-60P-201ENST00000364792 103 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 RNY1P6-201ENST00000384193 109 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 SNORA80D-201ENST00000384488 135 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 MIR569-201ENST00000385228 96 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU6-1319P-201ENST00000390855 104 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU6-747P-201ENST00000390928 104 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU6-241P-201ENST00000391148 104 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 RNU6-177P-201ENST00000411257 104 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 AC048334.1-201ENST00000477975 159 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 Y_RNA.690-201ENST00000516603 95 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 SNORA70.22-201ENST00000517160 124 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 MIR548AO-201ENST00000579992 96 ntBASIC1.53□□□□□ -2.16
PCDHGA3Q9Y5H0 SNORD50.2-201ENST00000365465 70 ntBASIC1.52□□□□□ -2.17
PCDHGA3Q9Y5H0 SNORD38B-201ENST00000384690 67 ntBASIC1.52□□□□□ -2.17
PCDHGA3Q9Y5H0 MIR517C-201ENST00000385103 95 ntBASIC1.52□□□□□ -2.17
PCDHGA3Q9Y5H0 SNORD12-201ENST00000391002 90 ntBASIC1.52□□□□□ -2.17
PCDHGA3Q9Y5H0 AL591704.2-201ENST00000421658 181 ntBASIC1.52□□□□□ -2.17
PCDHGA3Q9Y5H0 RPS29P23-201ENST00000458635 123 ntBASIC1.52□□□□□ -2.17
PCDHGA3Q9Y5H0 TUG1_4.1-201ENST00000619464 181 ntBASIC1.52□□□□□ -2.17
PCDHGA3Q9Y5H0 SNORD38B-202ENST00000625943 69 ntBASIC1.52□□□□□ -2.17
PCDHGA3Q9Y5H0 Z97988.1-201ENST00000637697 135 ntBASIC1.52□□□□□ -2.17
PCDHGA3Q9Y5H0 Y_RNA.430-201ENST00000384081 110 ntBASIC1.51□□□□□ -2.17
PCDHGA3Q9Y5H0 MIR613-201ENST00000385248 95 ntBASIC1.51□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU6-913P-201ENST00000390913 95 ntBASIC1.51□□□□□ -2.17
PCDHGA3Q9Y5H0 SNORA67.6-201ENST00000391093 99 ntBASIC1.51□□□□□ -2.17
PCDHGA3Q9Y5H0 RPS3AP1-201ENST00000413190 320 ntBASIC1.51□□□□□ -2.17
PCDHGA3Q9Y5H0 AL392103.1-201ENST00000447000 198 ntBASIC1.51□□□□□ -2.17
PCDHGA3Q9Y5H0 AL645939.4-201ENST00000604495 135 ntBASIC1.51□□□□□ -2.17
PCDHGA3Q9Y5H0 MIR8070-201ENST00000616510 88 ntBASIC1.51□□□□□ -2.17
PCDHGA3Q9Y5H0 U8.1-201ENST00000362843 134 ntBASIC1.5□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU1-42P-201ENST00000364033 160 ntBASIC1.5□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU6-915P-201ENST00000364943 103 ntBASIC1.5□□□□□ -2.17
PCDHGA3Q9Y5H0 Y_RNA.420-201ENST00000384043 110 ntBASIC1.5□□□□□ -2.17
PCDHGA3Q9Y5H0 SNORD26-201ENST00000384147 75 ntBASIC1.5□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU6-125P-201ENST00000384505 107 ntBASIC1.5□□□□□ -2.17
PCDHGA3Q9Y5H0 MT-TN-201ENST00000387400 73 ntBASIC1.5□□□□□ -2.17
PCDHGA3Q9Y5H0 AP000753.3-201ENST00000604083 169 ntBASIC1.5□□□□□ -2.17
PCDHGA3Q9Y5H0 BX248123.2-201ENST00000606318 124 ntBASIC1.5□□□□□ -2.17
PCDHGA3Q9Y5H0 SEPT14P17-201ENST00000617978 177 ntBASIC1.5□□□□□ -2.17
PCDHGA3Q9Y5H0 AC010332.2-201ENST00000613083 1904 ntBASIC1.49□□□□□ -2.17
PCDHGA3Q9Y5H0 SNORA25.3-201ENST00000363205 127 ntBASIC1.49□□□□□ -2.17
PCDHGA3Q9Y5H0 RNU6-392P-201ENST00000364926 101 ntBASIC1.49□□□□□ -2.17
PCDHGA3Q9Y5H0 Y_RNA.568-201ENST00000384742 113 ntBASIC1.49□□□□□ -2.17
PCDHGA3Q9Y5H0 MIR499A-201ENST00000384903 122 ntBASIC1.49□□□□□ -2.17
PCDHGA3Q9Y5H0 SNORA40-201ENST00000388090 126 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 250.6 ms