Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6-633P-201ENST00000362612 103 ntBASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 Y_RNA.99-201ENST00000363138 105 ntBASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 RNU6-163P-201ENST00000384396 106 ntBASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 RNU1-148P-201ENST00000384472 162 ntBASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 MIR524-201ENST00000385242 87 ntBASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 AC079804.2-201ENST00000490376 200 ntBASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 RNU7-181P-201ENST00000517234 74 ntBASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 AC103810.7-201ENST00000607821 91 ntBASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC39Q9UFE4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 Y_RNA.247-201ENST00000364500 92 ntBASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 MIR1267-201ENST00000408723 78 ntBASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 AC090844.1-201ENST00000422019 156 ntBASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 AC011753.1-201ENST00000451001 220 ntBASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 UBL5P3-201ENST00000475112 231 ntBASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 RNU6-1006P-201ENST00000516998 103 ntBASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 SNORD14A-201ENST00000606526 91 ntBASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 AC046143.2-201ENST00000609789 160 ntBASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 AC245884.12-201ENST00000615364 59 ntBASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 MIR6841-201ENST00000637129 72 ntBASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC39Q9UFE4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 MIRLET7C-201ENST00000362160 84 ntBASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 SNORA22.1-201ENST00000362701 134 ntBASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 RNA5SP109-201ENST00000391010 116 ntBASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 AC015922.2-201ENST00000435593 184 ntBASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 STAG3L5P-204ENST00000443759 179 ntBASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 MIR5007-201ENST00000583098 95 ntBASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 RNU6-86P-201ENST00000606534 107 ntBASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
CCDC39Q9UFE4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CCDC39Q9UFE4 RNU6-1163P-201ENST00000364516 107 ntBASIC2.6□□□□□ -1.99
CCDC39Q9UFE4 RNU6-424P-201ENST00000384367 105 ntBASIC2.6□□□□□ -1.99
CCDC39Q9UFE4 RNU6-160P-201ENST00000384591 107 ntBASIC2.6□□□□□ -1.99
CCDC39Q9UFE4 Y_RNA.609-201ENST00000410669 89 ntBASIC2.6□□□□□ -1.99
CCDC39Q9UFE4 RNA5SP270-201ENST00000411361 118 ntBASIC2.6□□□□□ -1.99
CCDC39Q9UFE4 UBL5P1-201ENST00000507979 193 ntBASIC2.6□□□□□ -1.99
CCDC39Q9UFE4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC39Q9UFE4 MIR3152-201ENST00000579801 74 ntBASIC2.6□□□□□ -1.99
CCDC39Q9UFE4 AC027279.3-201ENST00000625055 122 ntBASIC2.6□□□□□ -1.99
CCDC39Q9UFE4 SNORA26.6-201ENST00000391256 115 ntBASIC2.59□□□□□ -1.99
CCDC39Q9UFE4 RN7SKP192-201ENST00000411291 327 ntBASIC2.59□□□□□ -1.99
CCDC39Q9UFE4 RNU7-34P-201ENST00000459394 64 ntBASIC2.59□□□□□ -1.99
CCDC39Q9UFE4 AC026271.5-201ENST00000577873 130 ntBASIC2.59□□□□□ -1.99
CCDC39Q9UFE4 MIR6766-201ENST00000622641 72 ntBASIC2.59□□□□□ -1.99
CCDC39Q9UFE4 ZNF658B-202ENST00000615961 3375 ntBASIC2.59□□□□□ -2
CCDC39Q9UFE4 Y_RNA.140-201ENST00000363474 103 ntBASIC2.58□□□□□ -2
CCDC39Q9UFE4 SNORA32-201ENST00000384072 121 ntBASIC2.58□□□□□ -2
CCDC39Q9UFE4 RNU4-52P-201ENST00000384209 138 ntBASIC2.58□□□□□ -2
CCDC39Q9UFE4 RNU6-717P-201ENST00000459076 104 ntBASIC2.58□□□□□ -2
CCDC39Q9UFE4 MIR4712-201ENST00000583750 82 ntBASIC2.58□□□□□ -2
CCDC39Q9UFE4 MIR8054-201ENST00000620877 86 ntBASIC2.58□□□□□ -2
CCDC39Q9UFE4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.58□□□□□ -2
CCDC39Q9UFE4 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC39Q9UFE4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.58□□□□□ -2
CCDC39Q9UFE4 SNORA3A-201ENST00000364113 130 ntBASIC2.57□□□□□ -2
CCDC39Q9UFE4 SNORD115-27-201ENST00000364430 82 ntBASIC2.57□□□□□ -2
CCDC39Q9UFE4 Y_RNA.510-201ENST00000384511 114 ntBASIC2.57□□□□□ -2
CCDC39Q9UFE4 MIR1262-201ENST00000408276 93 ntBASIC2.57□□□□□ -2
CCDC39Q9UFE4 RNU6-958P-201ENST00000516995 106 ntBASIC2.57□□□□□ -2
CCDC39Q9UFE4 SEPT14P17-201ENST00000617978 177 ntBASIC2.57□□□□□ -2
CCDC39Q9UFE4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.57□□□□□ -2
CCDC39Q9UFE4 RNA5SP138-201ENST00000365098 114 ntBASIC2.56□□□□□ -2
CCDC39Q9UFE4 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.56□□□□□ -2
CCDC39Q9UFE4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.55□□□□□ -2
CCDC39Q9UFE4 SNORD38.1-201ENST00000363863 68 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 RNA5SP493-201ENST00000364115 91 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 RNU6-1229P-201ENST00000364295 107 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 RNU6-524P-201ENST00000384270 107 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 Y_RNA.565-201ENST00000384719 101 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 RNA5SP338-201ENST00000410495 85 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 RNU6-1190P-201ENST00000410811 104 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 AL445685.2-201ENST00000422551 342 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 RNU7-2P-201ENST00000516096 62 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 SNORA28-201ENST00000606769 126 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 MIR6840-201ENST00000611937 71 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 MIR6717-201ENST00000622747 73 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 SCARNA15.3-201ENST00000626315 122 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 SCARNA4.1-201ENST00000628597 123 ntBASIC2.55□□□□□ -2
CCDC39Q9UFE4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC39Q9UFE4 AC245060.5-201ENST00000610778 3293 ntBASIC2.54□□□□□ -2
CCDC39Q9UFE4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC39Q9UFE4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.54□□□□□ -2
CCDC39Q9UFE4 SNORA1.2-201ENST00000365189 134 ntBASIC2.54□□□□□ -2
CCDC39Q9UFE4 Y_RNA.370-201ENST00000365589 108 ntBASIC2.54□□□□□ -2
CCDC39Q9UFE4 SNORA70.7-201ENST00000384159 133 ntBASIC2.54□□□□□ -2
CCDC39Q9UFE4 RNU6-1307P-201ENST00000391012 103 ntBASIC2.54□□□□□ -2
CCDC39Q9UFE4 HMGN2P38-201ENST00000423806 265 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 175.6 ms