Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 MIR378D2-201ENST00000580636 98 ntBASIC1.15□□□□□ -2.23
USP44Q9H0E7 SNORD115-40-201ENST00000606510 82 ntBASIC1.15□□□□□ -2.23
USP44Q9H0E7 AC243994.1-201ENST00000618627 109 ntBASIC1.15□□□□□ -2.23
USP44Q9H0E7 MTND1P7-201ENST00000632801 297 ntBASIC1.15□□□□□ -2.23
USP44Q9H0E7 RNU6-978P-201ENST00000364371 103 ntBASIC1.14□□□□□ -2.23
USP44Q9H0E7 Y_RNA.233-201ENST00000364407 101 ntBASIC1.14□□□□□ -2.23
USP44Q9H0E7 SNORD114-24-201ENST00000365029 72 ntBASIC1.14□□□□□ -2.23
USP44Q9H0E7 RNU6-643P-201ENST00000384018 107 ntBASIC1.14□□□□□ -2.23
USP44Q9H0E7 MIR520E-201ENST00000384867 87 ntBASIC1.14□□□□□ -2.23
USP44Q9H0E7 SNORA75.2-201ENST00000391138 150 ntBASIC1.14□□□□□ -2.23
USP44Q9H0E7 SNORA75.3-201ENST00000391231 150 ntBASIC1.14□□□□□ -2.23
USP44Q9H0E7 OR2A41P-201ENST00000473586 105 ntBASIC1.14□□□□□ -2.23
USP44Q9H0E7 RNU6-1219P-201ENST00000516143 112 ntBASIC1.14□□□□□ -2.23
USP44Q9H0E7 MIR376A2-201ENST00000636782 80 ntBASIC1.14□□□□□ -2.23
USP44Q9H0E7 SNORA24-201ENST00000384096 131 ntBASIC1.13□□□□□ -2.23
USP44Q9H0E7 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
USP44Q9H0E7 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.13□□□□□ -2.23
USP44Q9H0E7 AL392103.1-201ENST00000447000 198 ntBASIC1.13□□□□□ -2.23
USP44Q9H0E7 AL138752.1-201ENST00000452964 351 ntBASIC1.13□□□□□ -2.23
USP44Q9H0E7 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.13□□□□□ -2.23
USP44Q9H0E7 MIR548AO-201ENST00000579992 96 ntBASIC1.13□□□□□ -2.23
USP44Q9H0E7 MIR3129-201ENST00000581095 76 ntBASIC1.13□□□□□ -2.23
USP44Q9H0E7 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
USP44Q9H0E7 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.12□□□□□ -2.23
USP44Q9H0E7 Y_RNA.410-201ENST00000383992 113 ntBASIC1.12□□□□□ -2.23
USP44Q9H0E7 SNORA27-201ENST00000384323 126 ntBASIC1.12□□□□□ -2.23
USP44Q9H0E7 Y_RNA.542-201ENST00000384641 111 ntBASIC1.12□□□□□ -2.23
USP44Q9H0E7 Y_RNA.793-201ENST00000411222 111 ntBASIC1.12□□□□□ -2.23
USP44Q9H0E7 SNORD116-25-201ENST00000516517 92 ntBASIC1.12□□□□□ -2.23
USP44Q9H0E7 MIR2115-201ENST00000516657 100 ntBASIC1.12□□□□□ -2.23
USP44Q9H0E7 MIR4661-201ENST00000582720 75 ntBASIC1.12□□□□□ -2.23
USP44Q9H0E7 AL365205.2-201ENST00000594586 68 ntBASIC1.12□□□□□ -2.23
USP44Q9H0E7 RNU6-1189P-201ENST00000383958 107 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 Y_RNA.440-201ENST00000384120 114 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 AC006461.1-201ENST00000412637 326 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 FABP5P4-201ENST00000437203 171 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 RNU7-67P-201ENST00000459003 62 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 snoU13.16-201ENST00000459350 104 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 snoU13.18-201ENST00000459483 104 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 RNU6-958P-201ENST00000516995 106 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 AP002392.1-201ENST00000537692 208 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 MIR4698-201ENST00000577795 80 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 MIR4431-201ENST00000579990 94 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 AC072026.1-201ENST00000605023 201 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 MIR6857-201ENST00000613267 93 ntBASIC1.11□□□□□ -2.23
USP44Q9H0E7 AC008163.1-202ENST00000636004 2889 ntBASIC1.1□□□□□ -2.23
USP44Q9H0E7 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
USP44Q9H0E7 RNU6-312P-201ENST00000364629 107 ntBASIC1.1□□□□□ -2.23
USP44Q9H0E7 RNU6-1292P-201ENST00000383856 107 ntBASIC1.1□□□□□ -2.23
USP44Q9H0E7 RPS29P24-201ENST00000486345 171 ntBASIC1.1□□□□□ -2.23
USP44Q9H0E7 FAM71BP1-201ENST00000604431 523 ntBASIC1.1□□□□□ -2.23
USP44Q9H0E7 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
USP44Q9H0E7 RNU6-396P-201ENST00000365369 105 ntBASIC1.09□□□□□ -2.23
USP44Q9H0E7 SEPT7P4-201ENST00000437076 306 ntBASIC1.09□□□□□ -2.23
USP44Q9H0E7 UBL5P1-201ENST00000507979 193 ntBASIC1.09□□□□□ -2.23
USP44Q9H0E7 SNORA81.3-201ENST00000517283 198 ntBASIC1.09□□□□□ -2.23
USP44Q9H0E7 MIR6516-201ENST00000630554 81 ntBASIC1.09□□□□□ -2.23
USP44Q9H0E7 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.09□□□□□ -2.24
USP44Q9H0E7 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
USP44Q9H0E7 Y_RNA.29-201ENST00000362570 113 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 Y_RNA.785-201ENST00000384290 109 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 MT-TN-201ENST00000387400 73 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 RNU6-913P-201ENST00000390913 95 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 SNORD111-201ENST00000408139 94 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.08□□□□□ -2.24
USP44Q9H0E7 RNU7-120P-201ENST00000459334 63 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 RNU6-861P-201ENST00000516745 106 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 Y_RNA.700-201ENST00000516806 100 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.08□□□□□ -2.24
USP44Q9H0E7 MIR5197-201ENST00000583721 112 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 SNORA4-201ENST00000584302 138 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 AC090425.1-201ENST00000610007 140 ntBASIC1.08□□□□□ -2.24
USP44Q9H0E7 RNU6-682P-201ENST00000363843 106 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 RNU6-654P-201ENST00000364373 107 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 Y_RNA.330-201ENST00000365230 109 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 RNU6-613P-201ENST00000410412 108 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 AC090844.1-201ENST00000422019 156 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 AL035398.1-201ENST00000430869 322 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 MTND5P15-201ENST00000434246 349 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 RNU7-73P-201ENST00000458743 63 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 RNU6-998P-201ENST00000515894 101 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 RNU7-53P-201ENST00000516705 60 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 AC004792.1-201ENST00000614523 137 ntBASIC1.07□□□□□ -2.24
USP44Q9H0E7 Y_RNA.240-201ENST00000364469 95 ntBASIC1.06□□□□□ -2.24
USP44Q9H0E7 RNU6-1318P-201ENST00000365389 103 ntBASIC1.06□□□□□ -2.24
USP44Q9H0E7 RNU6-1336P-201ENST00000383886 109 ntBASIC1.06□□□□□ -2.24
USP44Q9H0E7 RNU5E-9P-201ENST00000411164 104 ntBASIC1.06□□□□□ -2.24
USP44Q9H0E7 RNU7-96P-201ENST00000459535 64 ntBASIC1.06□□□□□ -2.24
USP44Q9H0E7 RPS29P1-201ENST00000465274 159 ntBASIC1.06□□□□□ -2.24
USP44Q9H0E7 AL078603.1-201ENST00000603824 313 ntBASIC1.06□□□□□ -2.24
USP44Q9H0E7 AC211469.2-201ENST00000605461 205 ntBASIC1.06□□□□□ -2.24
USP44Q9H0E7 MIR8055-201ENST00000610739 97 ntBASIC1.06□□□□□ -2.24
USP44Q9H0E7 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.06□□□□□ -2.24
USP44Q9H0E7 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
USP44Q9H0E7 MIR377-201ENST00000362145 69 ntBASIC1.05□□□□□ -2.24
USP44Q9H0E7 MIR342-201ENST00000362212 99 ntBASIC1.05□□□□□ -2.24
USP44Q9H0E7 SNORD113.3-201ENST00000364630 78 ntBASIC1.05□□□□□ -2.24
USP44Q9H0E7 Y_RNA.351-201ENST00000365436 96 ntBASIC1.05□□□□□ -2.24
USP44Q9H0E7 RNU6-597P-201ENST00000365620 102 ntBASIC1.05□□□□□ -2.24
USP44Q9H0E7 Y_RNA.521-201ENST00000384560 114 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 218.6 ms