Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 Y_RNA.343-201ENST00000365354 112 ntBASIC1.66□□□□□ -2.14
SMARCA1P28370 Y_RNA.420-201ENST00000384043 110 ntBASIC1.66□□□□□ -2.14
SMARCA1P28370 RNU6-321P-201ENST00000410912 106 ntBASIC1.66□□□□□ -2.14
SMARCA1P28370 snoU13.25-201ENST00000458945 104 ntBASIC1.66□□□□□ -2.14
SMARCA1P28370 snoU13.18-201ENST00000459483 104 ntBASIC1.66□□□□□ -2.14
SMARCA1P28370 SNORA31.4-201ENST00000516049 129 ntBASIC1.66□□□□□ -2.14
SMARCA1P28370 AP001485.1-201ENST00000604799 199 ntBASIC1.66□□□□□ -2.14
SMARCA1P28370 AC243994.1-201ENST00000618627 109 ntBASIC1.66□□□□□ -2.14
SMARCA1P28370 AC008133.2-201ENST00000624540 351 ntBASIC1.66□□□□□ -2.14
SMARCA1P28370 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SMARCA1P28370 ZNF209P-201ENST00000593450 2304 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 Y_RNA.120-201ENST00000363304 110 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 Y_RNA.224-201ENST00000364308 111 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 SNORA24-201ENST00000384096 131 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 Y_RNA.537-201ENST00000384626 109 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 MIR613-201ENST00000385248 95 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 RPS29P29-201ENST00000456396 171 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 RNU7-95P-201ENST00000459222 64 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 RPS29P24-201ENST00000486345 171 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 RNU6-947P-201ENST00000516264 106 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 SNORD111.1-201ENST00000516421 86 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 RNU6-165P-201ENST00000517170 99 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 AL512310.8-201ENST00000550183 120 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 MIR8070-201ENST00000616510 88 ntBASIC1.65□□□□□ -2.15
SMARCA1P28370 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SMARCA1P28370 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.65□□□□□ -2.15
SMARCA1P28370 AC010332.2-201ENST00000613083 1904 ntBASIC1.64□□□□□ -2.15
SMARCA1P28370 MIR342-201ENST00000362212 99 ntBASIC1.64□□□□□ -2.15
SMARCA1P28370 RNU6-309P-201ENST00000364573 106 ntBASIC1.64□□□□□ -2.15
SMARCA1P28370 RNU6-257P-201ENST00000410238 98 ntBASIC1.64□□□□□ -2.15
SMARCA1P28370 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.64□□□□□ -2.15
SMARCA1P28370 RPS29P23-201ENST00000458635 123 ntBASIC1.64□□□□□ -2.15
SMARCA1P28370 RNU7-96P-201ENST00000459535 64 ntBASIC1.64□□□□□ -2.15
SMARCA1P28370 RNU6-998P-201ENST00000515894 101 ntBASIC1.64□□□□□ -2.15
SMARCA1P28370 RNU6-958P-201ENST00000516995 106 ntBASIC1.64□□□□□ -2.15
SMARCA1P28370 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SMARCA1P28370 AP001340.1-201ENST00000624405 217 ntBASIC1.64□□□□□ -2.15
SMARCA1P28370 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
SMARCA1P28370 Y_RNA.116-201ENST00000363292 103 ntBASIC1.63□□□□□ -2.15
SMARCA1P28370 RNU6-915P-201ENST00000364943 103 ntBASIC1.63□□□□□ -2.15
SMARCA1P28370 SNORD50.2-201ENST00000365465 70 ntBASIC1.63□□□□□ -2.15
SMARCA1P28370 MTND4LP9-201ENST00000427694 174 ntBASIC1.63□□□□□ -2.15
SMARCA1P28370 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.63□□□□□ -2.15
SMARCA1P28370 RNU7-67P-201ENST00000459003 62 ntBASIC1.63□□□□□ -2.15
SMARCA1P28370 RPL30P7-201ENST00000479312 323 ntBASIC1.63□□□□□ -2.15
SMARCA1P28370 AL357312.1-201ENST00000603879 298 ntBASIC1.63□□□□□ -2.15
SMARCA1P28370 AL359821.1-201ENST00000605519 182 ntBASIC1.63□□□□□ -2.15
SMARCA1P28370 AC091932.4-201ENST00000623386 200 ntBASIC1.63□□□□□ -2.15
SMARCA1P28370 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.63□□□□□ -2.15
SMARCA1P28370 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.62□□□□□ -2.15
SMARCA1P28370 RNU6-704P-201ENST00000364162 103 ntBASIC1.62□□□□□ -2.15
SMARCA1P28370 SNORA51.10-201ENST00000384418 136 ntBASIC1.62□□□□□ -2.15
SMARCA1P28370 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
SMARCA1P28370 AL603914.1-201ENST00000401964 204 ntBASIC1.62□□□□□ -2.15
SMARCA1P28370 AL392103.1-201ENST00000447000 198 ntBASIC1.62□□□□□ -2.15
SMARCA1P28370 Y_RNA.651-201ENST00000459380 103 ntBASIC1.62□□□□□ -2.15
SMARCA1P28370 RNU7-80P-201ENST00000459562 61 ntBASIC1.62□□□□□ -2.15
SMARCA1P28370 Y_RNA.690-201ENST00000516603 95 ntBASIC1.62□□□□□ -2.15
SMARCA1P28370 AP001328.1-201ENST00000528550 176 ntBASIC1.62□□□□□ -2.15
SMARCA1P28370 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.62□□□□□ -2.15
SMARCA1P28370 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.62□□□□□ -2.15
SMARCA1P28370 AL596211.1-201ENST00000569873 2277 ntBASIC1.61□□□□□ -2.15
SMARCA1P28370 RNU6-1067P-201ENST00000384752 107 ntBASIC1.61□□□□□ -2.15
SMARCA1P28370 RNU6-913P-201ENST00000390913 95 ntBASIC1.61□□□□□ -2.15
SMARCA1P28370 Y_RNA.586-201ENST00000391146 98 ntBASIC1.61□□□□□ -2.15
SMARCA1P28370 AL035398.1-201ENST00000430869 322 ntBASIC1.61□□□□□ -2.15
SMARCA1P28370 AC009474.2-201ENST00000451383 136 ntBASIC1.61□□□□□ -2.15
SMARCA1P28370 RNU2-11P-201ENST00000459191 187 ntBASIC1.61□□□□□ -2.15
SMARCA1P28370 MIR4251-201ENST00000635819 61 ntBASIC1.61□□□□□ -2.15
SMARCA1P28370 SNORD18B-201ENST00000365659 72 ntBASIC1.6□□□□□ -2.15
SMARCA1P28370 MIR489-201ENST00000384923 84 ntBASIC1.6□□□□□ -2.15
SMARCA1P28370 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.6□□□□□ -2.15
SMARCA1P28370 MIR4421-201ENST00000578133 69 ntBASIC1.6□□□□□ -2.15
SMARCA1P28370 MIR3121-201ENST00000579680 77 ntBASIC1.6□□□□□ -2.15
SMARCA1P28370 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.6□□□□□ -2.15
SMARCA1P28370 HSPE1P19-201ENST00000603327 295 ntBASIC1.6□□□□□ -2.15
SMARCA1P28370 RNU1-133P-201ENST00000364867 167 ntBASIC1.59□□□□□ -2.15
SMARCA1P28370 SNORA70.7-201ENST00000384159 133 ntBASIC1.59□□□□□ -2.15
SMARCA1P28370 SNORA40-201ENST00000388090 126 ntBASIC1.59□□□□□ -2.15
SMARCA1P28370 RNU7-73P-201ENST00000458743 63 ntBASIC1.59□□□□□ -2.15
SMARCA1P28370 RNU7-45P-201ENST00000459460 63 ntBASIC1.59□□□□□ -2.15
SMARCA1P28370 RNU7-70P-201ENST00000516941 66 ntBASIC1.59□□□□□ -2.15
SMARCA1P28370 CYP3A52P-201ENST00000563326 91 ntBASIC1.59□□□□□ -2.15
SMARCA1P28370 MIR548AO-201ENST00000579992 96 ntBASIC1.59□□□□□ -2.15
SMARCA1P28370 AL022345.2-201ENST00000606307 135 ntBASIC1.59□□□□□ -2.15
SMARCA1P28370 Y_RNA.294-201ENST00000364916 102 ntBASIC1.58□□□□□ -2.16
SMARCA1P28370 Y_RNA.454-201ENST00000384224 113 ntBASIC1.58□□□□□ -2.16
SMARCA1P28370 RNU6-1190P-201ENST00000410811 104 ntBASIC1.58□□□□□ -2.16
SMARCA1P28370 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.58□□□□□ -2.16
SMARCA1P28370 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.58□□□□□ -2.16
SMARCA1P28370 MTATP6P21-201ENST00000440681 189 ntBASIC1.58□□□□□ -2.16
SMARCA1P28370 RPL39P39-201ENST00000455840 151 ntBASIC1.58□□□□□ -2.16
SMARCA1P28370 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.58□□□□□ -2.16
SMARCA1P28370 RNU7-53P-201ENST00000516705 60 ntBASIC1.58□□□□□ -2.16
SMARCA1P28370 AP003716.2-201ENST00000528260 108 ntBASIC1.58□□□□□ -2.16
SMARCA1P28370 AC091895.1-201ENST00000624494 256 ntBASIC1.58□□□□□ -2.16
SMARCA1P28370 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SMARCA1P28370 RNU6-349P-201ENST00000362402 107 ntBASIC1.57□□□□□ -2.16
SMARCA1P28370 SNORA25.3-201ENST00000363205 127 ntBASIC1.57□□□□□ -2.16
SMARCA1P28370 snoU13.16-201ENST00000459350 104 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 165 ms