Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 Y_RNA.410-201ENST00000383992 113 ntBASIC0.52□□□□□ -2.33
SDC3O75056 Y_RNA.422-201ENST00000384054 114 ntBASIC0.52□□□□□ -2.33
SDC3O75056 SNORD38B-201ENST00000384690 67 ntBASIC0.52□□□□□ -2.33
SDC3O75056 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.52□□□□□ -2.33
SDC3O75056 snoU13.21-201ENST00000459368 105 ntBASIC0.52□□□□□ -2.33
SDC3O75056 SNORD36C-201ENST00000516733 66 ntBASIC0.52□□□□□ -2.33
SDC3O75056 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.52□□□□□ -2.33
SDC3O75056 AC018659.1-201ENST00000551083 169 ntBASIC0.52□□□□□ -2.33
SDC3O75056 SNORD38B-202ENST00000625943 69 ntBASIC0.52□□□□□ -2.33
SDC3O75056 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.51□□□□□ -2.33
SDC3O75056 Y_RNA.30-201ENST00000362572 97 ntBASIC0.51□□□□□ -2.33
SDC3O75056 Y_RNA.634-201ENST00000364811 113 ntBASIC0.51□□□□□ -2.33
SDC3O75056 SNORA36.2-201ENST00000384004 127 ntBASIC0.51□□□□□ -2.33
SDC3O75056 Y_RNA.518-201ENST00000384552 113 ntBASIC0.51□□□□□ -2.33
SDC3O75056 MIR573-201ENST00000384964 99 ntBASIC0.51□□□□□ -2.33
SDC3O75056 MIR616-201ENST00000385293 97 ntBASIC0.51□□□□□ -2.33
SDC3O75056 AC015818.7-201ENST00000428754 109 ntBASIC0.51□□□□□ -2.33
SDC3O75056 AF228730.3-201ENST00000436691 102 ntBASIC0.51□□□□□ -2.33
SDC3O75056 AC087499.7-201ENST00000441958 109 ntBASIC0.51□□□□□ -2.33
SDC3O75056 RNU7-62P-201ENST00000458856 62 ntBASIC0.51□□□□□ -2.33
SDC3O75056 RNU7-96P-201ENST00000459535 64 ntBASIC0.51□□□□□ -2.33
SDC3O75056 RNU6-1270P-201ENST00000517128 108 ntBASIC0.51□□□□□ -2.33
SDC3O75056 MIR4282-201ENST00000583613 67 ntBASIC0.51□□□□□ -2.33
SDC3O75056 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
SDC3O75056 RNU6-945P-201ENST00000383947 107 ntBASIC0.5□□□□□ -2.33
SDC3O75056 Y_RNA.432-201ENST00000384087 111 ntBASIC0.5□□□□□ -2.33
SDC3O75056 RNU6-713P-201ENST00000384761 107 ntBASIC0.5□□□□□ -2.33
SDC3O75056 RNU6-1228P-201ENST00000391014 107 ntBASIC0.5□□□□□ -2.33
SDC3O75056 RNU6-177P-201ENST00000411257 104 ntBASIC0.5□□□□□ -2.33
SDC3O75056 SNORD83.1-201ENST00000411362 77 ntBASIC0.5□□□□□ -2.33
SDC3O75056 MIR18B-201ENST00000454574 71 ntBASIC0.5□□□□□ -2.33
SDC3O75056 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.5□□□□□ -2.33
SDC3O75056 RNU6-998P-201ENST00000515894 101 ntBASIC0.5□□□□□ -2.33
SDC3O75056 AL589743.1-201ENST00000551932 2712 ntBASIC0.49□□□□□ -2.33
SDC3O75056 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
SDC3O75056 Y_RNA.91-201ENST00000363042 107 ntBASIC0.49□□□□□ -2.33
SDC3O75056 Y_RNA.304-201ENST00000365011 112 ntBASIC0.49□□□□□ -2.33
SDC3O75056 Y_RNA.440-201ENST00000384120 114 ntBASIC0.49□□□□□ -2.33
SDC3O75056 RNU2-70P-201ENST00000410718 179 ntBASIC0.49□□□□□ -2.33
SDC3O75056 AL358176.2-201ENST00000425769 204 ntBASIC0.49□□□□□ -2.33
SDC3O75056 SNRPGP8-201ENST00000454064 226 ntBASIC0.49□□□□□ -2.33
SDC3O75056 RNU6-977P-201ENST00000516411 103 ntBASIC0.49□□□□□ -2.33
SDC3O75056 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.49□□□□□ -2.33
SDC3O75056 MIR4771-2-201ENST00000577758 74 ntBASIC0.49□□□□□ -2.33
SDC3O75056 MIR4804-201ENST00000581683 73 ntBASIC0.49□□□□□ -2.33
SDC3O75056 MIR4771-1-201ENST00000582617 74 ntBASIC0.49□□□□□ -2.33
SDC3O75056 MIR6740-201ENST00000618268 113 ntBASIC0.49□□□□□ -2.33
SDC3O75056 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.49□□□□□ -2.33
SDC3O75056 U6.104-201ENST00000637979 90 ntBASIC0.49□□□□□ -2.33
SDC3O75056 Y_RNA.115-201ENST00000363272 98 ntBASIC0.48□□□□□ -2.33
SDC3O75056 snoU2_19.4-201ENST00000364329 80 ntBASIC0.48□□□□□ -2.33
SDC3O75056 Y_RNA.258-201ENST00000364613 105 ntBASIC0.48□□□□□ -2.33
SDC3O75056 SNORA1.1-201ENST00000364671 133 ntBASIC0.48□□□□□ -2.33
SDC3O75056 RNU4-45P-201ENST00000365469 141 ntBASIC0.48□□□□□ -2.33
SDC3O75056 RNU6-1189P-201ENST00000383958 107 ntBASIC0.48□□□□□ -2.33
SDC3O75056 MIR520F-201ENST00000384824 87 ntBASIC0.48□□□□□ -2.33
SDC3O75056 SNORD77.3-201ENST00000391113 65 ntBASIC0.48□□□□□ -2.33
SDC3O75056 AC114737.2-201ENST00000421583 173 ntBASIC0.48□□□□□ -2.33
SDC3O75056 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.48□□□□□ -2.33
SDC3O75056 RNA5SP330-201ENST00000517096 96 ntBASIC0.48□□□□□ -2.33
SDC3O75056 MIR4676-201ENST00000583078 72 ntBASIC0.48□□□□□ -2.33
SDC3O75056 AC020891.4-201ENST00000605745 93 ntBASIC0.48□□□□□ -2.33
SDC3O75056 MIR8062-201ENST00000621515 85 ntBASIC0.48□□□□□ -2.33
SDC3O75056 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
SDC3O75056 RNY1P8-201ENST00000383970 114 ntBASIC0.47□□□□□ -2.33
SDC3O75056 MIR520H-201ENST00000385126 88 ntBASIC0.47□□□□□ -2.33
SDC3O75056 MT-TT-201ENST00000387460 66 ntBASIC0.47□□□□□ -2.33
SDC3O75056 AL606845.1-201ENST00000404881 255 ntBASIC0.47□□□□□ -2.33
SDC3O75056 MIR548I3-201ENST00000408378 149 ntBASIC0.47□□□□□ -2.33
SDC3O75056 RNU6-651P-201ENST00000411040 105 ntBASIC0.47□□□□□ -2.33
SDC3O75056 RNU6-602P-201ENST00000411155 105 ntBASIC0.47□□□□□ -2.33
SDC3O75056 AL157398.1-201ENST00000452981 186 ntBASIC0.47□□□□□ -2.33
SDC3O75056 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.47□□□□□ -2.33
SDC3O75056 RNU7-56P-201ENST00000458744 62 ntBASIC0.47□□□□□ -2.33
SDC3O75056 snoU13.2-201ENST00000459201 104 ntBASIC0.47□□□□□ -2.33
SDC3O75056 RNU6-1153P-201ENST00000516760 105 ntBASIC0.47□□□□□ -2.33
SDC3O75056 MIR924-201ENST00000638017 53 ntBASIC0.47□□□□□ -2.33
SDC3O75056 RNU6-1237P-201ENST00000384777 107 ntBASIC0.46□□□□□ -2.34
SDC3O75056 MIR588-201ENST00000384900 83 ntBASIC0.46□□□□□ -2.34
SDC3O75056 MIR563-201ENST00000385080 79 ntBASIC0.46□□□□□ -2.34
SDC3O75056 Y_RNA.590-201ENST00000410140 107 ntBASIC0.46□□□□□ -2.34
SDC3O75056 HMGN1P33-201ENST00000432945 451 ntBASIC0.46□□□□□ -2.34
SDC3O75056 RNU2-11P-201ENST00000459191 187 ntBASIC0.46□□□□□ -2.34
SDC3O75056 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.46□□□□□ -2.34
SDC3O75056 RN7SKP12-201ENST00000516275 143 ntBASIC0.46□□□□□ -2.34
SDC3O75056 RNU6-635P-201ENST00000516651 102 ntBASIC0.46□□□□□ -2.34
SDC3O75056 Y_RNA.720-201ENST00000517166 92 ntBASIC0.46□□□□□ -2.34
SDC3O75056 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.46□□□□□ -2.34
SDC3O75056 AC243829.6-201ENST00000612652 106 ntBASIC0.46□□□□□ -2.34
SDC3O75056 uc_338.6-201ENST00000613544 171 ntBASIC0.46□□□□□ -2.34
SDC3O75056 Y_RNA.374-201ENST00000365606 101 ntBASIC0.45□□□□□ -2.34
SDC3O75056 RNU6-716P-201ENST00000365621 103 ntBASIC0.45□□□□□ -2.34
SDC3O75056 Y_RNA.512-201ENST00000384518 102 ntBASIC0.45□□□□□ -2.34
SDC3O75056 Y_RNA.542-201ENST00000384641 111 ntBASIC0.45□□□□□ -2.34
SDC3O75056 MT-TW-201ENST00000387382 68 ntBASIC0.45□□□□□ -2.34
SDC3O75056 RNU6-381P-201ENST00000391259 108 ntBASIC0.45□□□□□ -2.34
SDC3O75056 MIR1302-6-201ENST00000408466 90 ntBASIC0.45□□□□□ -2.34
SDC3O75056 RNU6-1165P-201ENST00000410119 107 ntBASIC0.45□□□□□ -2.34
SDC3O75056 Y_RNA.622-201ENST00000411091 108 ntBASIC0.45□□□□□ -2.34
SDC3O75056 RNU6-453P-201ENST00000516819 85 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 224.7 ms