Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL078603.1-201ENST00000603824 313 ntBASIC3.19□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RMST_2.1-201ENST00000617263 136 ntBASIC3.19□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR561-201ENST00000385216 97 ntBASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNA5SP181-201ENST00000410246 98 ntBASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNA5SP261-201ENST00000410536 106 ntBASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RPS12P2-201ENST00000439728 269 ntBASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR7515-201ENST00000637837 67 ntBASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 SNORA22.1-201ENST00000362701 134 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.94-201ENST00000363068 106 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.99-201ENST00000363138 105 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 SNORA70.7-201ENST00000384159 133 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-163P-201ENST00000384396 106 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU1-101P-201ENST00000391171 127 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR1267-201ENST00000408723 78 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC007536.1-201ENST00000533382 349 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR376B-201ENST00000614515 100 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR6873-201ENST00000622788 63 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNA5SP139-201ENST00000364340 117 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.470-201ENST00000384307 117 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR889-201ENST00000401280 79 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC090844.1-201ENST00000422019 156 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC069257.2-201ENST00000441819 155 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-1258P-201ENST00000516911 111 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-667P-201ENST00000517186 102 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AL355297.2-201ENST00000604792 129 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC103810.7-201ENST00000607821 91 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC027279.3-201ENST00000625055 122 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.36-201ENST00000362602 112 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNA5SP456-201ENST00000364002 114 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 Y_RNA.494-201ENST00000384432 111 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6-160P-201ENST00000384591 107 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 Y_RNA.609-201ENST00000410669 89 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORA28-201ENST00000606769 126 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL442644.1-201ENST00000454390 3105 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 Y_RNA.30-201ENST00000362572 97 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORA1.2-201ENST00000365189 134 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU7-45P-201ENST00000459460 63 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNA5SP220-201ENST00000516298 104 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU7-53P-201ENST00000516705 60 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 U4.3-201ENST00000621047 82 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIR6841-201ENST00000637129 72 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORD38.1-201ENST00000363863 68 ntBASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC015922.2-201ENST00000435593 184 ntBASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIR1270-201ENST00000459320 83 ntBASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SEM1P1-201ENST00000506694 209 ntBASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6-86P-201ENST00000606534 107 ntBASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6-862P-201ENST00000362804 105 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORD114-6-201ENST00000364393 72 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORA17.3-201ENST00000391159 129 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL359511.1-201ENST00000402970 211 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 STAG3L5P-204ENST00000443759 179 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU7-181P-201ENST00000517234 74 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 DNAJC19P9-201ENST00000555084 351 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIR5092-201ENST00000583139 88 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIR4712-201ENST00000583750 82 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL445685.2-201ENST00000422551 342 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL161932.1-201ENST00000437408 146 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU7-34P-201ENST00000459394 64 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC234781.5-201ENST00000508429 271 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC023141.11-201ENST00000508864 202 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC103810.6-201ENST00000606708 136 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORD3E-202ENST00000627253 216 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC007336.1-201ENST00000576365 3828 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6-457P-201ENST00000363999 107 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 Y_RNA.205-201ENST00000364128 113 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6-1163P-201ENST00000364516 107 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 Y_RNA.565-201ENST00000384719 101 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6ATAC41P-201ENST00000408600 126 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC145423.2-201ENST00000610631 239 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORA32-201ENST00000384072 121 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORA11.4-201ENST00000408823 129 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL606517.2-201ENST00000442855 241 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC104389.3-201ENST00000445629 235 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU7-2P-201ENST00000516096 62 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIR6504-201ENST00000613520 61 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIRLET7C-201ENST00000362160 84 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 247.2 ms