Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU6-654P-201ENST00000364373 107 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 RNU6-392P-201ENST00000364926 101 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 SNORA1.2-201ENST00000365189 134 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 Y_RNA.330-201ENST00000365230 109 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 RNU4-70P-201ENST00000384579 139 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 RNU6-847P-201ENST00000411115 108 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 AL591704.2-201ENST00000421658 181 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 AL392103.1-201ENST00000447000 198 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 RNU7-21P-201ENST00000459430 62 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 RNU7-40P-201ENST00000516397 64 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 RNU6-126P-201ENST00000516685 103 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 RNU6-958P-201ENST00000516995 106 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 MIR3129-201ENST00000581095 76 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 AC141273.2-201ENST00000618989 130 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 AC134878.1-201ENST00000619901 243 ntBASIC0.98□□□□□ -2.25
NKX3-1Q99801 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.98□□□□□ -2.25
NKX3-1Q99801 SNORD115-34-201ENST00000362441 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-12-201ENST00000362583 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-29-201ENST00000362834 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-9-201ENST00000362912 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-21-201ENST00000362963 81 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-14-201ENST00000363090 81 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-13-201ENST00000363358 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-41-201ENST00000363608 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-11-201ENST00000363616 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-5-201ENST00000363633 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-39-201ENST00000363694 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-4-201ENST00000363810 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-16-201ENST00000363887 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-6-201ENST00000363942 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-42-201ENST00000364273 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-15-201ENST00000364809 81 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-1-201ENST00000364961 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-26-201ENST00000365067 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-10-201ENST00000365073 81 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-43-201ENST00000365503 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-36-201ENST00000365629 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 Y_RNA.476-201ENST00000384347 108 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORA80D-201ENST00000384488 135 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORA26-201ENST00000391286 122 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 MIR1287-201ENST00000408492 90 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 AC090844.1-201ENST00000422019 156 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 RPS29P28-201ENST00000446439 141 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 AC087499.4-201ENST00000448505 178 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 AL138752.1-201ENST00000452964 351 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.97□□□□□ -2.25
NKX3-1Q99801 SNORD115-40-201ENST00000606510 82 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 MIR6516-201ENST00000630554 81 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 AL391516.1-201ENST00000554380 2449 ntBASIC0.97□□□□□ -2.25
NKX3-1Q99801 RNU1-124P-201ENST00000363861 145 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 RNA5SP48-201ENST00000363969 126 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 Y_RNA.297-201ENST00000364950 91 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 RNU6-53P-201ENST00000365367 106 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 RNU6-1336P-201ENST00000383886 109 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 SNORA27-201ENST00000384323 126 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 RNU6-913P-201ENST00000390913 95 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 SNORA40.5-201ENST00000391061 128 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 RNA5SP95-201ENST00000410319 137 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 RNU7-67P-201ENST00000459003 62 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 RNU6-1219P-201ENST00000516143 112 ntBASIC0.96□□□□□ -2.26
NKX3-1Q99801 RNU6-1020P-201ENST00000363684 107 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 SNORD114-27-201ENST00000363766 70 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 Y_RNA.224-201ENST00000364308 111 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 Y_RNA.226-201ENST00000364337 114 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 RNU6-978P-201ENST00000364371 103 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 RNU6-275P-201ENST00000364910 107 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 SNORA24-201ENST00000384096 131 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 Y_RNA.440-201ENST00000384120 114 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 RNU6-1067P-201ENST00000384752 107 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 MIR499A-201ENST00000384903 122 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 SNORA79-201ENST00000408376 140 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 AC063976.4-201ENST00000421971 163 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.95□□□□□ -2.26
NKX3-1Q99801 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.95□□□□□ -2.26
NKX3-1Q99801 SNORD124-201ENST00000459577 104 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 AC107297.1-201ENST00000459991 176 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 OR2A41P-201ENST00000473586 105 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 AC023827.1-201ENST00000569247 97 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 MIR378D2-201ENST00000580636 98 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 AP000942.4-201ENST00000604811 241 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 SEPT14P17-201ENST00000617978 177 ntBASIC0.95□□□□□ -2.26
NKX3-1Q99801 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
NKX3-1Q99801 MIR342-201ENST00000362212 99 ntBASIC0.94□□□□□ -2.26
NKX3-1Q99801 RNU6-1189P-201ENST00000383958 107 ntBASIC0.94□□□□□ -2.26
NKX3-1Q99801 RNU6-643P-201ENST00000384018 107 ntBASIC0.94□□□□□ -2.26
NKX3-1Q99801 Y_RNA.552-201ENST00000384665 112 ntBASIC0.94□□□□□ -2.26
NKX3-1Q99801 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.94□□□□□ -2.26
NKX3-1Q99801 Y_RNA.644-201ENST00000459006 113 ntBASIC0.94□□□□□ -2.26
NKX3-1Q99801 AC087343.1-201ENST00000477341 475 ntBASIC0.94□□□□□ -2.26
NKX3-1Q99801 RNU6-138P-201ENST00000515952 107 ntBASIC0.94□□□□□ -2.26
NKX3-1Q99801 Y_RNA.674-201ENST00000516362 113 ntBASIC0.94□□□□□ -2.26
NKX3-1Q99801 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.94□□□□□ -2.26
NKX3-1Q99801 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.94□□□□□ -2.26
NKX3-1Q99801 MIR4295-201ENST00000585286 85 ntBASIC0.94□□□□□ -2.26
NKX3-1Q99801 Z83818.1-201ENST00000603584 150 ntBASIC0.94□□□□□ -2.26
NKX3-1Q99801 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
NKX3-1Q99801 Y_RNA.75-201ENST00000362927 97 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 Y_RNA.233-201ENST00000364407 101 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 SNORA22-201ENST00000383907 134 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 Y_RNA.515-201ENST00000384535 112 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 163.8 ms