Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 Y_RNA.793-201ENST00000411222 111 ntBASIC1.24□□□□□ -2.21
SHMT1P34896 AC048334.1-201ENST00000477975 159 ntBASIC1.24□□□□□ -2.21
SHMT1P34896 RNU7-41P-201ENST00000515917 61 ntBASIC1.24□□□□□ -2.21
SHMT1P34896 SNORA31.2-201ENST00000516019 134 ntBASIC1.24□□□□□ -2.21
SHMT1P34896 MRPS18CP4-201ENST00000535821 231 ntBASIC1.24□□□□□ -2.21
SHMT1P34896 AC072026.1-201ENST00000605023 201 ntBASIC1.24□□□□□ -2.21
SHMT1P34896 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-34-201ENST00000362441 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-12-201ENST00000362583 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-29-201ENST00000362834 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-9-201ENST00000362912 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-21-201ENST00000362963 81 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-14-201ENST00000363090 81 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-13-201ENST00000363358 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-41-201ENST00000363608 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-11-201ENST00000363616 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-5-201ENST00000363633 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-39-201ENST00000363694 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-4-201ENST00000363810 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-16-201ENST00000363887 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-6-201ENST00000363942 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-42-201ENST00000364273 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 Y_RNA.241-201ENST00000364470 117 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-15-201ENST00000364809 81 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORA25.8-201ENST00000364831 128 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-1-201ENST00000364961 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-26-201ENST00000365067 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-10-201ENST00000365073 81 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-43-201ENST00000365503 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-36-201ENST00000365629 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 Y_RNA.410-201ENST00000383992 113 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORA40.5-201ENST00000391061 128 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 RNU6-138P-201ENST00000515952 107 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD116-25-201ENST00000516517 92 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 AP003484.1-201ENST00000530974 250 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 MIR378D2-201ENST00000580636 98 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 SNORD115-40-201ENST00000606510 82 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 MIR4251-201ENST00000635819 61 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 U6.106-201ENST00000636360 105 ntBASIC1.23□□□□□ -2.21
SHMT1P34896 MIR373-201ENST00000362273 69 ntBASIC1.22□□□□□ -2.21
SHMT1P34896 Y_RNA.23-201ENST00000362496 106 ntBASIC1.22□□□□□ -2.21
SHMT1P34896 Y_RNA.233-201ENST00000364407 101 ntBASIC1.22□□□□□ -2.21
SHMT1P34896 Y_RNA.412-201ENST00000384001 104 ntBASIC1.22□□□□□ -2.21
SHMT1P34896 RNU6-643P-201ENST00000384018 107 ntBASIC1.22□□□□□ -2.21
SHMT1P34896 SNORA51.10-201ENST00000384418 136 ntBASIC1.22□□□□□ -2.21
SHMT1P34896 Y_RNA.542-201ENST00000384641 111 ntBASIC1.22□□□□□ -2.21
SHMT1P34896 RNU2-13P-201ENST00000515909 113 ntBASIC1.22□□□□□ -2.21
SHMT1P34896 PRELID3BP2-201ENST00000605362 201 ntBASIC1.22□□□□□ -2.21
SHMT1P34896 MIR4791-201ENST00000607666 84 ntBASIC1.22□□□□□ -2.21
SHMT1P34896 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.21□□□□□ -2.22
SHMT1P34896 RNA5SP327-201ENST00000362494 101 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 Y_RNA.29-201ENST00000362570 113 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 RNU6-312P-201ENST00000364629 107 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 SNORA70.7-201ENST00000384159 133 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 RNU6-938P-201ENST00000411285 103 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 AF228730.3-201ENST00000436691 102 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 RPS23P4-201ENST00000487908 423 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 RPS26P48-201ENST00000491713 339 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 SNORA70.22-201ENST00000517160 124 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 AP002392.1-201ENST00000537692 208 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 AC243994.1-201ENST00000618627 109 ntBASIC1.21□□□□□ -2.22
SHMT1P34896 RNA5SP264-201ENST00000363115 107 ntBASIC1.2□□□□□ -2.22
SHMT1P34896 RNU4-38P-201ENST00000364472 129 ntBASIC1.2□□□□□ -2.22
SHMT1P34896 RNU6-1189P-201ENST00000383958 107 ntBASIC1.2□□□□□ -2.22
SHMT1P34896 Y_RNA.785-201ENST00000384290 109 ntBASIC1.2□□□□□ -2.22
SHMT1P34896 MIR570-201ENST00000384917 97 ntBASIC1.2□□□□□ -2.22
SHMT1P34896 MIR618-201ENST00000385287 98 ntBASIC1.2□□□□□ -2.22
SHMT1P34896 RNU6-910P-201ENST00000390844 107 ntBASIC1.2□□□□□ -2.22
SHMT1P34896 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.2□□□□□ -2.22
SHMT1P34896 snoU13.25-201ENST00000458945 104 ntBASIC1.2□□□□□ -2.22
SHMT1P34896 RPS29P1-201ENST00000465274 159 ntBASIC1.2□□□□□ -2.22
SHMT1P34896 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.2□□□□□ -2.22
SHMT1P34896 MIR4431-201ENST00000579990 94 ntBASIC1.2□□□□□ -2.22
SHMT1P34896 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.2□□□□□ -2.22
SHMT1P34896 RNU6-1292P-201ENST00000383856 107 ntBASIC1.19□□□□□ -2.22
SHMT1P34896 SNORA1-201ENST00000384107 130 ntBASIC1.19□□□□□ -2.22
SHMT1P34896 SNORA27-201ENST00000384323 126 ntBASIC1.19□□□□□ -2.22
SHMT1P34896 SNORA25-201ENST00000384384 134 ntBASIC1.19□□□□□ -2.22
SHMT1P34896 SNORA80D-201ENST00000384488 135 ntBASIC1.19□□□□□ -2.22
SHMT1P34896 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.19□□□□□ -2.22
SHMT1P34896 RNU6-113P-201ENST00000516653 101 ntBASIC1.19□□□□□ -2.22
SHMT1P34896 SNORD36C-201ENST00000516733 66 ntBASIC1.19□□□□□ -2.22
SHMT1P34896 AP003716.2-201ENST00000528260 108 ntBASIC1.19□□□□□ -2.22
SHMT1P34896 AL365205.2-201ENST00000594586 68 ntBASIC1.19□□□□□ -2.22
SHMT1P34896 AL022345.2-201ENST00000606307 135 ntBASIC1.19□□□□□ -2.22
SHMT1P34896 MIR103A2-201ENST00000362154 78 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 SNORA24-201ENST00000384096 131 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 SNORD77.3-201ENST00000391113 65 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 MIR1285-1-201ENST00000408593 84 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 AC006461.1-201ENST00000412637 326 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 RNU7-67P-201ENST00000459003 62 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 RNU7-120P-201ENST00000459334 63 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 RN7SKP179-201ENST00000516126 217 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 RNU6-1219P-201ENST00000516143 112 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 SNORA18.4-201ENST00000516440 124 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 RNU11-2P-201ENST00000516898 142 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 SNORA81.3-201ENST00000517283 198 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 AC022559.1-201ENST00000520905 205 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 AC019288.1-201ENST00000557918 224 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 RMST_2.1-201ENST00000617263 136 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 277.1 ms