Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.2□□□□□ -2.22
HOXD4P09016 AC087685.1-201ENST00000587507 141 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 AL121890.5-201ENST00000620848 304 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 AC106754.2-201ENST00000623006 233 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 AC027279.3-201ENST00000625055 122 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.19□□□□□ -2.22
HOXD4P09016 RNU6-833P-201ENST00000363486 107 ntBASIC1.19□□□□□ -2.22
HOXD4P09016 RNU6-200P-201ENST00000364743 107 ntBASIC1.19□□□□□ -2.22
HOXD4P09016 RNA5SP259-201ENST00000365541 109 ntBASIC1.19□□□□□ -2.22
HOXD4P09016 RNU6-47P-201ENST00000383866 107 ntBASIC1.19□□□□□ -2.22
HOXD4P09016 RNU6-847P-201ENST00000411115 108 ntBASIC1.19□□□□□ -2.22
HOXD4P09016 SNORD77.4-201ENST00000516158 81 ntBASIC1.19□□□□□ -2.22
HOXD4P09016 Z83818.1-201ENST00000603584 150 ntBASIC1.19□□□□□ -2.22
HOXD4P09016 RNU2-4P-201ENST00000606190 192 ntBASIC1.19□□□□□ -2.22
HOXD4P09016 AL391903.3-201ENST00000612158 163 ntBASIC1.19□□□□□ -2.22
HOXD4P09016 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
HOXD4P09016 SNORD14E-201ENST00000364009 85 ntBASIC1.18□□□□□ -2.22
HOXD4P09016 Y_RNA.571-201ENST00000384753 98 ntBASIC1.18□□□□□ -2.22
HOXD4P09016 RNU6-918P-201ENST00000391219 106 ntBASIC1.18□□□□□ -2.22
HOXD4P09016 AL606845.1-201ENST00000404881 255 ntBASIC1.18□□□□□ -2.22
HOXD4P09016 AC023449.1-201ENST00000454464 154 ntBASIC1.18□□□□□ -2.22
HOXD4P09016 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.18□□□□□ -2.22
HOXD4P09016 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.18□□□□□ -2.22
HOXD4P09016 MIR3660-201ENST00000584845 100 ntBASIC1.18□□□□□ -2.22
HOXD4P09016 AP001485.1-201ENST00000604799 199 ntBASIC1.18□□□□□ -2.22
HOXD4P09016 RMST_2.1-201ENST00000617263 136 ntBASIC1.18□□□□□ -2.22
HOXD4P09016 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
HOXD4P09016 Y_RNA.7-201ENST00000362352 102 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 RNU6-199P-201ENST00000362954 107 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 RNU6-1020P-201ENST00000363684 107 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 RNU6-103P-201ENST00000363686 107 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 RNU6-1138P-201ENST00000365359 106 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 SNORD26-201ENST00000384147 75 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 MIR526A1-201ENST00000384897 85 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 MIR758-201ENST00000390227 88 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 MIR802-201ENST00000390235 94 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 Y_RNA.622-201ENST00000411091 108 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 RPS27P16-201ENST00000425758 201 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 SNRPGP14-201ENST00000435400 219 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 HMGN2P32-201ENST00000444648 269 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 Y_RNA.644-201ENST00000459006 113 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 AC092991.1-201ENST00000477176 376 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 RNU6-917P-201ENST00000516294 104 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 Y_RNA.674-201ENST00000516362 113 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
HOXD4P09016 MIR6734-201ENST00000621166 68 ntBASIC1.17□□□□□ -2.22
HOXD4P09016 RNU6-268P-201ENST00000364174 107 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 Y_RNA.336-201ENST00000365307 109 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 RNU6-442P-201ENST00000383968 104 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 RNU6-484P-201ENST00000384016 107 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 RNY3P5-201ENST00000384127 102 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 RNU6-1065P-201ENST00000384513 106 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 RNU6-939P-201ENST00000384634 107 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 RNU6-1228P-201ENST00000391014 107 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 SNORA40.6-201ENST00000391153 128 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.16□□□□□ -2.22
HOXD4P09016 RNU6-561P-201ENST00000516222 102 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 AC019176.1-201ENST00000518519 225 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 AC022559.1-201ENST00000520905 205 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 AC068338.1-201ENST00000565567 176 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 MIR4744-201ENST00000581563 82 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 AL365434.2-201ENST00000607979 234 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 Pinc.1-201ENST00000616452 154 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.16□□□□□ -2.22
HOXD4P09016 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
HOXD4P09016 Y_RNA.121-201ENST00000363309 113 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 Y_RNA.182-201ENST00000363880 111 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 Y_RNA.435-201ENST00000384095 112 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 Y_RNA.486-201ENST00000384398 107 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 MIR452-201ENST00000385020 85 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 MIR516B2-201ENST00000385190 85 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 SNRPGP8-201ENST00000454064 226 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 RPL30P7-201ENST00000479312 323 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 RNU6-794P-201ENST00000517261 64 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 AC090142.3-201ENST00000519012 385 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 AC109810.1-201ENST00000534066 224 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 MIR3937-201ENST00000580135 106 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 AC108706.1-201ENST00000611053 297 ntBASIC1.15□□□□□ -2.23
HOXD4P09016 MIR96-201ENST00000362288 78 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 SNORD45.3-201ENST00000363836 72 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 Y_RNA.412-201ENST00000384001 104 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 RNU4-70P-201ENST00000384579 139 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 RNU6-578P-201ENST00000390980 103 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 Y_RNA.793-201ENST00000411222 111 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 MTND5P15-201ENST00000434246 349 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 AC108059.2-201ENST00000434626 151 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 AL138752.1-201ENST00000452964 351 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 AC004223.1-201ENST00000479840 271 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 Y_RNA.797-201ENST00000515977 94 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 RN7SKP179-201ENST00000516126 217 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 MIR4662B-201ENST00000579498 81 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 AC006441.5-201ENST00000612680 209 ntBASIC1.14□□□□□ -2.23
HOXD4P09016 Y_RNA.29-201ENST00000362570 113 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 Y_RNA.91-201ENST00000363042 107 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 Y_RNA.233-201ENST00000364407 101 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 RNU1-93P-201ENST00000364704 169 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 RNU6-275P-201ENST00000364910 107 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 RNU6-728P-201ENST00000365375 104 ntBASIC1.13□□□□□ -2.23
HOXD4P09016 Y_RNA.432-201ENST00000384087 111 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 209 ms