Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.6□□□□□ -2.31
TM9SF3Q9HD45 RNA5SP499-201ENST00000363982 119 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 RNU6-268P-201ENST00000364174 107 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 Y_RNA.418-201ENST00000384029 102 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 Y_RNA.602-201ENST00000410535 92 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 AC098934.3-201ENST00000430450 190 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 AC092628.1-201ENST00000436250 252 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 POLR2KP2-201ENST00000438155 177 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 RNU6-437P-201ENST00000459408 95 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 RNU4-54P-201ENST00000516428 129 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 AC015726.2-201ENST00000620112 122 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 AC243829.3-201ENST00000622177 108 ntBASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.59□□□□□ -2.31
TM9SF3Q9HD45 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.59□□□□□ -2.32
TM9SF3Q9HD45 Y_RNA.105-201ENST00000363182 111 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 RNA5SP48-201ENST00000363969 126 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 SNORA72.4-201ENST00000384174 132 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 SNORD63-201ENST00000384262 68 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 MIR802-201ENST00000390235 94 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 Y_RNA.645-201ENST00000391229 102 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 SNORD99-201ENST00000408612 74 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 U7.7-201ENST00000459276 60 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 RNU6-496P-201ENST00000516145 99 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 AC008507.4-201ENST00000585464 127 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 AL589743.1-201ENST00000551932 2712 ntBASIC0.58□□□□□ -2.32
TM9SF3Q9HD45 SNORD113-8-201ENST00000363497 74 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 RNU6-442P-201ENST00000383968 104 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 SNORD38C-201ENST00000384381 69 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 MIR15B-201ENST00000385045 98 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 RNU6-383P-201ENST00000410864 94 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 MTND4P19-201ENST00000446659 478 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 AL392103.1-201ENST00000447000 198 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 U8.19-201ENST00000459095 133 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 SNORD11-201ENST00000459124 84 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 snoU13.21-201ENST00000459368 105 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 AC098869.1-201ENST00000481627 292 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 MRPS35P2-201ENST00000508242 191 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 Y_RNA.714-201ENST00000517065 90 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 AC018659.1-201ENST00000551083 169 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 MIR548AO-201ENST00000579992 96 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 MIR4300-201ENST00000581016 96 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 RAC1P9-201ENST00000604990 392 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 AL138825.1-201ENST00000618587 192 ntBASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
TM9SF3Q9HD45 Y_RNA.394-201ENST00000383942 103 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 SNORA2B-201ENST00000384583 137 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 RNU6-763P-201ENST00000390865 106 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 U8.17-201ENST00000391292 132 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 RNU6-994P-201ENST00000410507 111 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 AC024067.1-201ENST00000426199 223 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 AC015818.7-201ENST00000428754 109 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 AC087499.7-201ENST00000441958 109 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 HSPE1P25-201ENST00000455484 251 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 RNU6-191P-201ENST00000516295 94 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 RNU6-764P-201ENST00000516396 105 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 RNU6-229P-201ENST00000516614 102 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 AC124312.5-201ENST00000604451 268 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 AL136317.1-201ENST00000612653 226 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 Pinc.1-201ENST00000616452 154 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 MIR376A1-201ENST00000616574 68 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.56□□□□□ -2.32
TM9SF3Q9HD45 RNU4-50P-201ENST00000364361 141 ntBASIC0.55□□□□□ -2.32
TM9SF3Q9HD45 MIR1302-11-201ENST00000408051 138 ntBASIC0.55□□□□□ -2.32
TM9SF3Q9HD45 MIR1302-9-201ENST00000408365 138 ntBASIC0.55□□□□□ -2.32
TM9SF3Q9HD45 MIR1302-10-201ENST00000408734 138 ntBASIC0.55□□□□□ -2.32
TM9SF3Q9HD45 AC067940.1-201ENST00000458411 300 ntBASIC0.55□□□□□ -2.32
TM9SF3Q9HD45 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
TM9SF3Q9HD45 MIR1302-2-201ENST00000607096 138 ntBASIC0.55□□□□□ -2.32
TM9SF3Q9HD45 SNORD113-5-201ENST00000607261 78 ntBASIC0.55□□□□□ -2.32
TM9SF3Q9HD45 RNY1P8-201ENST00000383970 114 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 Y_RNA.424-201ENST00000384063 103 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 RNU6-121P-201ENST00000410525 99 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 PMCHL1-202ENST00000423102 261 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 SEPT14P8-201ENST00000508026 178 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 AP003484.1-201ENST00000530974 250 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 AC104695.3-201ENST00000604052 296 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 MIR4791-201ENST00000607666 84 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 MTND1P7-201ENST00000632801 297 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 MTND4P29-201ENST00000503122 1372 ntBASIC0.54□□□□□ -2.32
TM9SF3Q9HD45 Y_RNA.222-201ENST00000364264 102 ntBASIC0.53□□□□□ -2.32
TM9SF3Q9HD45 Y_RNA.445-201ENST00000384168 102 ntBASIC0.53□□□□□ -2.32
TM9SF3Q9HD45 Y_RNA.494-201ENST00000384432 111 ntBASIC0.53□□□□□ -2.32
TM9SF3Q9HD45 RNU6-205P-201ENST00000390858 107 ntBASIC0.53□□□□□ -2.32
TM9SF3Q9HD45 MTCO1P5-201ENST00000433573 344 ntBASIC0.53□□□□□ -2.32
TM9SF3Q9HD45 RNU4-57P-201ENST00000515980 135 ntBASIC0.53□□□□□ -2.32
TM9SF3Q9HD45 RNU7-25P-201ENST00000516544 62 ntBASIC0.53□□□□□ -2.32
TM9SF3Q9HD45 RNU6-897P-201ENST00000517135 105 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 242.9 ms